RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 SHANK3Q9BYB0 1731 aa24.81■■□□□ 1.56
COL9A3-214ENST00000490398 NCAPD2Q15021 1401 aa24.8■■□□□ 1.56
COL9A3-214ENST00000490398 PROM2Q8N271 834 aa24.8■■□□□ 1.56
COL9A3-214ENST00000490398 RAPGEF4Q8WZA2 1011 aa24.8■■□□□ 1.56
COL9A3-214ENST00000490398 RREB1Q92766 1687 aa24.8■■□□□ 1.56
COL9A3-214ENST00000490398 PARD3Q8TEW0 1356 aa24.8■■□□□ 1.56
COL9A3-214ENST00000490398 TATP17735 454 aaPredicted RBP24.79■■□□□ 1.56
COL9A3-214ENST00000490398 R3HDM1Q15032 1099 aaKnown RBP24.79■■□□□ 1.56
COL9A3-214ENST00000490398 CC2D1BQ5T0F9 858 aaKnown RBP24.79■■□□□ 1.56
COL9A3-214ENST00000490398 PLSCR1O15162 318 aa24.78■■□□□ 1.56
COL9A3-214ENST00000490398 CNGB1Q14028 1251 aaPredicted RBP24.78■■□□□ 1.56
COL9A3-214ENST00000490398 NHSQ6T4R5 1651 aa24.77■■□□□ 1.56
COL9A3-214ENST00000490398 NUP188Q5SRE5 1749 aa24.77■■□□□ 1.56
COL9A3-214ENST00000490398 CYP27B1O15528 508 aa24.73■■□□□ 1.55
COL9A3-214ENST00000490398 PRIM1P49642 420 aaKnown RBP24.72■■□□□ 1.55
COL9A3-214ENST00000490398 IGSF1Q8N6C5 1336 aa24.71■■□□□ 1.55
COL9A3-214ENST00000490398 TXNRD1Q16881 649 aa24.71■■□□□ 1.55
COL9A3-214ENST00000490398 ANO8Q9HCE9 1232 aaPredicted RBP24.71■■□□□ 1.55
COL9A3-214ENST00000490398 RGPD3A6NKT7 1758 aaPredicted RBP24.7■■□□□ 1.55
COL9A3-214ENST00000490398 RGPD4Q7Z3J3 1758 aa24.7■■□□□ 1.55
COL9A3-214ENST00000490398 MTHFSP49914 203 aa24.69■■□□□ 1.54
COL9A3-214ENST00000490398 AEBP1Q8IUX7 1158 aa24.69■■□□□ 1.54
COL9A3-214ENST00000490398 SYTL4Q96C24 671 aaPredicted RBP24.69■■□□□ 1.54
COL9A3-214ENST00000490398 DOT1LQ8TEK3 1739 aa24.69■■□□□ 1.54
COL9A3-214ENST00000490398 BTAF1O14981 1849 aa24.68■■□□□ 1.54
COL9A3-214ENST00000490398 IL13P35225 146 aa24.68■■□□□ 1.54
COL9A3-214ENST00000490398 NPC1L1Q9UHC9 1359 aa24.67■■□□□ 1.54
COL9A3-214ENST00000490398 PCDH11XQ9BZA7 1347 aa24.67■■□□□ 1.54
COL9A3-214ENST00000490398 PCDH11YQ9BZA8 1340 aa24.67■■□□□ 1.54
COL9A3-214ENST00000490398 PKD1L3Q7Z443 1732 aa24.66■■□□□ 1.54
COL9A3-214ENST00000490398 NBPF14Q5TI25 921 aa24.65■■□□□ 1.54
COL9A3-214ENST00000490398 LRRC4BQ9NT99 713 aa24.64■■□□□ 1.54
COL9A3-214ENST00000490398 KCNQ4P56696 695 aa24.62■■□□□ 1.53
COL9A3-214ENST00000490398 PDGFDQ9GZP0 370 aaPredicted RBP24.62■■□□□ 1.53
COL9A3-214ENST00000490398 SPG7Q9UQ90 795 aa24.62■■□□□ 1.53
COL9A3-214ENST00000490398 KAT6BQ8WYB5 2073 aa24.62■■□□□ 1.53
COL9A3-214ENST00000490398 TOGARAM1Q9Y4F4 1720 aa24.61■■□□□ 1.53
COL9A3-214ENST00000490398 SULT6B1Q6IMI4 303 aa24.61■■□□□ 1.53
COL9A3-214ENST00000490398 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.61■■□□□ 1.531e-6■□□□□ 9.6
COL9A3-214ENST00000490398 PHKG2P15735 406 aa24.6■■□□□ 1.53
COL9A3-214ENST00000490398 NKX1-1Q15270 411 aaPredicted RBP24.6■■□□□ 1.53
COL9A3-214ENST00000490398 COL3A1P02461 1466 aaPredicted RBP24.58■■□□□ 1.52
COL9A3-214ENST00000490398 MPRIPQ6WCQ1 1025 aa24.57■■□□□ 1.52
COL9A3-214ENST00000490398 PAPPAQ13219 1627 aa24.57■■□□□ 1.52
COL9A3-214ENST00000490398 KDRP35968 1356 aa24.56■■□□□ 1.52
COL9A3-214ENST00000490398 SLC15A2Q16348 729 aa24.56■■□□□ 1.52
COL9A3-214ENST00000490398 ZNF827Q17R98 1081 aa24.56■■□□□ 1.52
COL9A3-214ENST00000490398 IFNL2Q8IZJ0 200 aa24.56■■□□□ 1.52
COL9A3-214ENST00000490398 DIAPH1O60610 1272 aaKnown RBP24.54■■□□□ 1.52
COL9A3-214ENST00000490398 HMOX1P09601 288 aa24.54■■□□□ 1.52
COL9A3-214ENST00000490398 PIGBQ92521 554 aa24.54■■□□□ 1.52
COL9A3-214ENST00000490398 STK32BQ9NY57 414 aa24.54■■□□□ 1.52
COL9A3-214ENST00000490398 PLEKHO1Q53GL0 409 aaPredicted RBP24.53■■□□□ 1.52
COL9A3-214ENST00000490398 LRP5O75197 1615 aa24.53■■□□□ 1.52
COL9A3-214ENST00000490398 PPP2R1AP30153 589 aa24.52■■□□□ 1.52
COL9A3-214ENST00000490398 SLC27A3Q5K4L6 730 aa24.51■■□□□ 1.51
COL9A3-214ENST00000490398 ZNF530Q6P9A1 599 aaPredicted RBP24.51■■□□□ 1.51
COL9A3-214ENST00000490398 LY75O60449 1722 aa24.5■■□□□ 1.51
COL9A3-214ENST00000490398 AKT1S1Q96B36 256 aa24.5■■□□□ 1.51
COL9A3-214ENST00000490398 PLEKHG2Q9H7P9 1386 aa24.5■■□□□ 1.51
COL9A3-214ENST00000490398 CASZ1Q86V15 1759 aa24.49■■□□□ 1.51
COL9A3-214ENST00000490398 ITGB4P16144 1822 aa24.49■■□□□ 1.51
COL9A3-214ENST00000490398 CCNL1Q9UK58 526 aaPredicted RBP24.49■■□□□ 1.51
COL9A3-214ENST00000490398 KDM6AO15550 1401 aaPredicted RBP24.49■■□□□ 1.51
COL9A3-214ENST00000490398 AMOTQ4VCS5 1084 aa24.48■■□□□ 1.51
COL9A3-214ENST00000490398 PALLDQ8WX93 1383 aa24.48■■□□□ 1.51
COL9A3-214ENST00000490398 U2SURPO15042 1029 aaKnown RBP24.46■■□□□ 1.51
COL9A3-214ENST00000490398 ZBTB7AO95365 584 aa24.46■■□□□ 1.51
COL9A3-214ENST00000490398 TMOD3Q9NYL9 352 aa24.46■■□□□ 1.51
COL9A3-214ENST00000490398 ASAP1Q9ULH1 1129 aa24.46■■□□□ 1.51
COL9A3-214ENST00000490398 DDX10Q13206 875 aaKnown RBP24.45■■□□□ 1.5
COL9A3-214ENST00000490398 DCAF5Q96JK2 942 aa24.44■■□□□ 1.5
COL9A3-214ENST00000490398 ATG3Q9NT62 314 aa24.43■■□□□ 1.5
COL9A3-214ENST00000490398 MTHFSDQ2M296 383 aaKnown RBP24.42■■□□□ 1.5
COL9A3-214ENST00000490398 ATF5Q9Y2D1 282 aaPredicted RBP24.42■■□□□ 1.5
COL9A3-214ENST00000490398 PNPLA7Q6ZV29 1317 aa24.41■■□□□ 1.5
COL9A3-214ENST00000490398 ERVV-2B6SEH9 535 aa24.41■■□□□ 1.5
COL9A3-214ENST00000490398 HSP90AB1P08238 724 aaKnown RBP24.41■■□□□ 1.5
COL9A3-214ENST00000490398 C1orf141Q5JVX7 400 aa24.41■■□□□ 1.5
COL9A3-214ENST00000490398 SPON1Q9HCB6 807 aa24.41■■□□□ 1.5
COL9A3-214ENST00000490398 SMARCC1Q92922 1105 aaPredicted RBP24.4■■□□□ 1.5
COL9A3-214ENST00000490398 LGR6Q9HBX8 967 aa24.4■■□□□ 1.5
COL9A3-214ENST00000490398 PTGER2P43116 358 aa24.38■■□□□ 1.49
COL9A3-214ENST00000490398 AKAP4Q5JQC9 854 aa24.38■■□□□ 1.49
COL9A3-214ENST00000490398 CFAP53Q96M91 514 aa24.38■■□□□ 1.49
COL9A3-214ENST00000490398 SLC4A9Q96Q91 983 aa24.38■■□□□ 1.49
COL9A3-214ENST00000490398 LOC102724428A0A0B4J2F2 783 aa24.37■■□□□ 1.49
COL9A3-214ENST00000490398 SIK1P57059 783 aa24.37■■□□□ 1.49
COL9A3-214ENST00000490398 CABP4P57796 275 aa24.37■■□□□ 1.49
COL9A3-214ENST00000490398 ITPK1Q13572 414 aa24.37■■□□□ 1.49
COL9A3-214ENST00000490398 SMIM5Q71RC9 77 aa24.37■■□□□ 1.49
COL9A3-214ENST00000490398 AMIGO3Q86WK7 504 aa24.37■■□□□ 1.49
COL9A3-214ENST00000490398 TFCP2L1Q9NZI6 479 aa24.37■■□□□ 1.49
COL9A3-214ENST00000490398 TUBGCP6Q96RT7 1819 aa24.37■■□□□ 1.49
COL9A3-214ENST00000490398 NFATC2IPQ8NCF5 419 aa24.36■■□□□ 1.49
COL9A3-214ENST00000490398 LINC00116Q8NCU8 138 aa24.36■■□□□ 1.49
COL9A3-214ENST00000490398 C5P01031 1676 aa24.35■■□□□ 1.49
COL9A3-214ENST00000490398 PHACTR3Q96KR7 559 aa24.35■■□□□ 1.49
COL9A3-214ENST00000490398 RSPH6AQ9H0K4 717 aa24.35■■□□□ 1.49
COL9A3-214ENST00000490398 SGIP1Q9BQI5 828 aa24.34■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms