RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 FAM208AQ9UK61 1670 aaKnown RBP13.51□□□□□ -0.25
TMEM39A-210ENST00000490099 TXNRD1Q16881 649 aa13.51□□□□□ -0.25
TMEM39A-210ENST00000490099 LTV1Q96GA3 475 aaPredicted RBP13.51□□□□□ -0.25
TMEM39A-210ENST00000490099 NSD3Q9BZ95 1437 aa13.5□□□□□ -0.25
TMEM39A-210ENST00000490099 HSPA5P11021 654 aaKnown RBP13.5□□□□□ -0.25
TMEM39A-210ENST00000490099 HSP90AB2PQ58FF8 381 aa13.5□□□□□ -0.25
TMEM39A-210ENST00000490099 ANO8Q9HCE9 1232 aaPredicted RBP13.5□□□□□ -0.25
TMEM39A-210ENST00000490099 CGNL1Q0VF96 1302 aa13.49□□□□□ -0.25
TMEM39A-210ENST00000490099 SPINK5Q9NQ38 1064 aaPredicted RBP13.49□□□□□ -0.25
TMEM39A-210ENST00000490099 ATF5Q9Y2D1 282 aaPredicted RBP13.49□□□□□ -0.25
TMEM39A-210ENST00000490099 FLT4P35916 1363 aa13.48□□□□□ -0.25
TMEM39A-210ENST00000490099 NHSQ6T4R5 1651 aa13.48□□□□□ -0.25
TMEM39A-210ENST00000490099 ZCRB1Q8TBF4 217 aaKnown RBP13.48□□□□□ -0.25
TMEM39A-210ENST00000490099 WASHC2AQ641Q2 1341 aa13.47□□□□□ -0.25
TMEM39A-210ENST00000490099 CACNB1Q02641 598 aaPredicted RBP13.47□□□□□ -0.25
TMEM39A-210ENST00000490099 ACSBG1Q96GR2 724 aa13.47□□□□□ -0.25
TMEM39A-210ENST00000490099 MEGF6O75095 1541 aa13.47□□□□□ -0.25
TMEM39A-210ENST00000490099 NCAPD2Q15021 1401 aa13.47□□□□□ -0.25
TMEM39A-210ENST00000490099 DDX54Q8TDD1 881 aaKnown RBP13.46□□□□□ -0.25
TMEM39A-210ENST00000490099 POLKQ9UBT6 870 aa13.46□□□□□ -0.25
TMEM39A-210ENST00000490099 EMILIN1Q9Y6C2 1016 aa13.46□□□□□ -0.25
TMEM39A-210ENST00000490099 KIF20BQ96Q89 1820 aa13.46□□□□□ -0.26
TMEM39A-210ENST00000490099 SLC15A2Q16348 729 aa13.45□□□□□ -0.26
TMEM39A-210ENST00000490099 SPON1Q9HCB6 807 aa13.45□□□□□ -0.26
TMEM39A-210ENST00000490099 RGPD2P0DJD1 1756 aa13.45□□□□□ -0.26
TMEM39A-210ENST00000490099 PRIM1P49642 420 aaKnown RBP13.44□□□□□ -0.26
TMEM39A-210ENST00000490099 PDGFDQ9GZP0 370 aaPredicted RBP13.44□□□□□ -0.26
TMEM39A-210ENST00000490099 PANK3Q9H999 370 aa13.44□□□□□ -0.26
TMEM39A-210ENST00000490099 LRRC4BQ9NT99 713 aa13.44□□□□□ -0.26
TMEM39A-210ENST00000490099 NSD2O96028 1365 aa13.44□□□□□ -0.26
TMEM39A-210ENST00000490099 SMG6Q86US8 1419 aaKnown RBP13.43□□□□□ -0.26
TMEM39A-210ENST00000490099 USHBP1Q8N6Y0 703 aa13.43□□□□□ -0.26
TMEM39A-210ENST00000490099 RAPGEF4Q8WZA2 1011 aa13.43□□□□□ -0.26
TMEM39A-210ENST00000490099 SHANK3Q9BYB0 1731 aa13.42□□□□□ -0.26
TMEM39A-210ENST00000490099 ANKRD26Q9UPS8 1709 aa13.42□□□□□ -0.26
TMEM39A-210ENST00000490099 BTAF1O14981 1849 aa13.42□□□□□ -0.26
TMEM39A-210ENST00000490099 SLC27A3Q5K4L6 730 aa13.42□□□□□ -0.26
TMEM39A-210ENST00000490099 STK32BQ9NY57 414 aa13.42□□□□□ -0.26
TMEM39A-210ENST00000490099 CASZ1Q86V15 1759 aa13.42□□□□□ -0.26
TMEM39A-210ENST00000490099 CYP27B1O15528 508 aa13.41□□□□□ -0.26
TMEM39A-210ENST00000490099 TATP17735 454 aaPredicted RBP13.41□□□□□ -0.26
TMEM39A-210ENST00000490099 PTGER2P43116 358 aa13.41□□□□□ -0.26
TMEM39A-210ENST00000490099 NKX1-1Q15270 411 aaPredicted RBP13.41□□□□□ -0.26
TMEM39A-210ENST00000490099 AKT1S1Q96B36 256 aa13.41□□□□□ -0.26
TMEM39A-210ENST00000490099 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.41□□□□□ -0.262e-6■■□□□ 11.9
TMEM39A-210ENST00000490099 PAPPAQ13219 1627 aa13.41□□□□□ -0.26
TMEM39A-210ENST00000490099 KAT6BQ8WYB5 2073 aa13.41□□□□□ -0.26
TMEM39A-210ENST00000490099 EYA1Q99502 592 aa13.4□□□□□ -0.26
TMEM39A-210ENST00000490099 SGIP1Q9BQI5 828 aa13.4□□□□□ -0.26
TMEM39A-210ENST00000490099 CAPN15O75808 1086 aa13.39□□□□□ -0.27
TMEM39A-210ENST00000490099 MAP2P11137 1827 aaKnown RBP13.39□□□□□ -0.27
TMEM39A-210ENST00000490099 PCDH11XQ9BZA7 1347 aa13.39□□□□□ -0.27
TMEM39A-210ENST00000490099 PCDH11YQ9BZA8 1340 aa13.39□□□□□ -0.27
TMEM39A-210ENST00000490099 PLEKHG2Q9H7P9 1386 aa13.38□□□□□ -0.27
TMEM39A-210ENST00000490099 EIF4A2Q14240 407 aaKnown RBP13.38□□□□□ -0.27
TMEM39A-210ENST00000490099 ZNF827Q17R98 1081 aa13.38□□□□□ -0.27
TMEM39A-210ENST00000490099 POLR3GLQ9BT43 218 aa13.38□□□□□ -0.27
TMEM39A-210ENST00000490099 PPM1GO15355 546 aaPredicted RBP13.37□□□□□ -0.27
TMEM39A-210ENST00000490099 PER1O15534 1290 aaPredicted RBP13.37□□□□□ -0.27
TMEM39A-210ENST00000490099 AMER1Q5JTC6 1135 aaPredicted RBP13.37□□□□□ -0.27
TMEM39A-210ENST00000490099 MTFR1LQ9H019 292 aa13.37□□□□□ -0.27
TMEM39A-210ENST00000490099 KIF7Q2M1P5 1343 aa13.37□□□□□ -0.27
TMEM39A-210ENST00000490099 ZBTB7AO95365 584 aa13.36□□□□□ -0.27
TMEM39A-210ENST00000490099 SYTL4Q96C24 671 aaPredicted RBP13.36□□□□□ -0.27
TMEM39A-210ENST00000490099 IGSF1Q8N6C5 1336 aa13.36□□□□□ -0.27
TMEM39A-210ENST00000490099 SLC16A10Q8TF71 515 aa13.35□□□□□ -0.27
TMEM39A-210ENST00000490099 ZNF219Q9P2Y4 722 aaPredicted RBP13.35□□□□□ -0.27
TMEM39A-210ENST00000490099 SPG7Q9UQ90 795 aa13.35□□□□□ -0.27
TMEM39A-210ENST00000490099 LY75O60449 1722 aa13.35□□□□□ -0.27
TMEM39A-210ENST00000490099 PKD1L3Q7Z443 1732 aa13.34□□□□□ -0.27
TMEM39A-210ENST00000490099 DOT1LQ8TEK3 1739 aa13.34□□□□□ -0.27
TMEM39A-210ENST00000490099 TNNT2P45379 298 aaPredicted RBP13.34□□□□□ -0.27
TMEM39A-210ENST00000490099 KCNQ4P56696 695 aa13.34□□□□□ -0.27
TMEM39A-210ENST00000490099 KNSTRNQ9Y448 316 aa13.34□□□□□ -0.27
TMEM39A-210ENST00000490099 MORC1Q86VD1 984 aa13.33□□□□□ -0.28
TMEM39A-210ENST00000490099 PNPLA7Q6ZV29 1317 aa13.33□□□□□ -0.28
TMEM39A-210ENST00000490099 PHKG2P15735 406 aa13.32□□□□□ -0.28
TMEM39A-210ENST00000490099 HMGB2P26583 209 aaKnown RBP13.32□□□□□ -0.28
TMEM39A-210ENST00000490099 PIGBQ92521 554 aa13.32□□□□□ -0.28
TMEM39A-210ENST00000490099 PPP1R1BQ9UD71 204 aaPredicted RBP13.32□□□□□ -0.28
TMEM39A-210ENST00000490099 CCNL1Q9UK58 526 aaPredicted RBP13.32□□□□□ -0.28
TMEM39A-210ENST00000490099 MPRIPQ6WCQ1 1025 aa13.31□□□□□ -0.28
TMEM39A-210ENST00000490099 IFNL2Q8IZJ0 200 aa13.31□□□□□ -0.28
TMEM39A-210ENST00000490099 SMARCC1Q92922 1105 aaPredicted RBP13.31□□□□□ -0.28
TMEM39A-210ENST00000490099 MAP3K5Q99683 1374 aa13.31□□□□□ -0.28
TMEM39A-210ENST00000490099 QSER1Q2KHR3 1735 aa13.3□□□□□ -0.28
TMEM39A-210ENST00000490099 IL13P35225 146 aa13.3□□□□□ -0.28
TMEM39A-210ENST00000490099 KDRP35968 1356 aa13.3□□□□□ -0.28
TMEM39A-210ENST00000490099 NPC1L1Q9UHC9 1359 aa13.3□□□□□ -0.28
TMEM39A-210ENST00000490099 COL24A1Q17RW2 1714 aa13.3□□□□□ -0.28
TMEM39A-210ENST00000490099 SYT17Q9BSW7 474 aa13.29□□□□□ -0.28
TMEM39A-210ENST00000490099 TFCP2L1Q9NZI6 479 aa13.29□□□□□ -0.28
TMEM39A-210ENST00000490099 TOGARAM1Q9Y4F4 1720 aa13.29□□□□□ -0.28
TMEM39A-210ENST00000490099 PALLDQ8WX93 1383 aa13.29□□□□□ -0.28
TMEM39A-210ENST00000490099 ARXQ96QS3 562 aa13.28□□□□□ -0.28
TMEM39A-210ENST00000490099 FHDC1Q9C0D6 1143 aaPredicted RBP13.28□□□□□ -0.28
TMEM39A-210ENST00000490099 ITGB4P16144 1822 aa13.27□□□□□ -0.28
TMEM39A-210ENST00000490099 ERVV-2B6SEH9 535 aa13.27□□□□□ -0.29
TMEM39A-210ENST00000490099 AMOTQ4VCS5 1084 aa13.27□□□□□ -0.29
TMEM39A-210ENST00000490099 PLEKHO1Q53GL0 409 aaPredicted RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms