RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 PLEKHF1Q96S99 279 aa20.86■□□□□ 0.93
SYNE1-227ENST00000489156 RSPH6AQ9H0K4 717 aa20.86■□□□□ 0.93
SYNE1-227ENST00000489156 CCDC27Q2M243 656 aa20.86■□□□□ 0.93
SYNE1-227ENST00000489156 GJD4Q96KN9 370 aaPredicted RBP20.86■□□□□ 0.93
SYNE1-227ENST00000489156 PRKAR2BP31323 418 aa20.84■□□□□ 0.93
SYNE1-227ENST00000489156 CDCA7LQ96GN5 454 aa20.84■□□□□ 0.93
SYNE1-227ENST00000489156 GLI3P10071 1580 aa20.84■□□□□ 0.93
SYNE1-227ENST00000489156 RAPGEF4Q8WZA2 1011 aa20.84■□□□□ 0.93
SYNE1-227ENST00000489156 THRAP3Q9Y2W1 955 aaKnown RBP20.83■□□□□ 0.92
SYNE1-227ENST00000489156 WNK3Q9BYP7 1800 aa20.83■□□□□ 0.92
SYNE1-227ENST00000489156 IL2RBP14784 551 aa20.82■□□□□ 0.92
SYNE1-227ENST00000489156 FAM98CQ17RN3 349 aaKnown RBP20.82■□□□□ 0.92
SYNE1-227ENST00000489156 WWC1Q8IX03 1113 aa20.82■□□□□ 0.92
SYNE1-227ENST00000489156 MEGF6O75095 1541 aa20.82■□□□□ 0.92
SYNE1-227ENST00000489156 MAPK8IP3Q9UPT6 1336 aa20.81■□□□□ 0.92
SYNE1-227ENST00000489156 TATP17735 454 aaPredicted RBP20.81■□□□□ 0.92
SYNE1-227ENST00000489156 NEFMP07197 916 aa20.8■□□□□ 0.92
SYNE1-227ENST00000489156 SLFN5Q08AF3 891 aa20.8■□□□□ 0.92
SYNE1-227ENST00000489156 BARGINQ6ZT62 677 aa20.8■□□□□ 0.92
SYNE1-227ENST00000489156 TRMT2AQ8IZ69 625 aaKnown RBP20.8■□□□□ 0.92
SYNE1-227ENST00000489156 PHACTR3Q96KR7 559 aa20.8■□□□□ 0.92
SYNE1-227ENST00000489156 E9PSI1 815 aa20.79■□□□□ 0.92
SYNE1-227ENST00000489156 POTEAQ6S8J7 498 aa20.79■□□□□ 0.92
SYNE1-227ENST00000489156 WDR63Q8IWG1 891 aa20.79■□□□□ 0.92
SYNE1-227ENST00000489156 PARP4Q9UKK3 1724 aaKnown RBP20.79■□□□□ 0.92
SYNE1-227ENST00000489156 RNF123Q5XPI4 1314 aa20.79■□□□□ 0.92
SYNE1-227ENST00000489156 DUSP27Q5VZP5 1158 aa20.79■□□□□ 0.92
SYNE1-227ENST00000489156 DISP2A7MBM2 1401 aa20.78■□□□□ 0.92
SYNE1-227ENST00000489156 FKBP8Q14318 412 aa20.78■□□□□ 0.92
SYNE1-227ENST00000489156 TMPOP42166 694 aaKnown RBP20.77■□□□□ 0.92
SYNE1-227ENST00000489156 A0A0G2JS52 829 aa20.77■□□□□ 0.92
SYNE1-227ENST00000489156 RBM6P78332 1123 aaKnown RBP20.77■□□□□ 0.92
SYNE1-227ENST00000489156 MYT1Q01538 1121 aa20.77■□□□□ 0.92
SYNE1-227ENST00000489156 OVOS2A0A0G2JMS6 1433 aa20.77■□□□□ 0.91
SYNE1-227ENST00000489156 NEUROD2Q15784 382 aa20.76■□□□□ 0.91
SYNE1-227ENST00000489156 ERICH6BQ5W0A0 696 aa20.76■□□□□ 0.91
SYNE1-227ENST00000489156 CDCA7Q9BWT1 371 aaPredicted RBP20.76■□□□□ 0.91
SYNE1-227ENST00000489156 RCAN3Q9UKA8 241 aa20.75■□□□□ 0.91
SYNE1-227ENST00000489156 RRP7AQ9Y3A4 280 aaKnown RBP20.75■□□□□ 0.91
SYNE1-227ENST00000489156 RXRBP28702 533 aa20.75■□□□□ 0.91
SYNE1-227ENST00000489156 MTHFSDQ2M296 383 aaKnown RBP20.75■□□□□ 0.91
SYNE1-227ENST00000489156 PLEKHO1Q53GL0 409 aaPredicted RBP20.75■□□□□ 0.91
SYNE1-227ENST00000489156 PKD1L3Q7Z443 1732 aa20.74■□□□□ 0.91
SYNE1-227ENST00000489156 ONECUT3O60422 494 aaPredicted RBP20.74■□□□□ 0.91
SYNE1-227ENST00000489156 ZCRB1Q8TBF4 217 aaKnown RBP20.74■□□□□ 0.91
SYNE1-227ENST00000489156 EXOC5O00471 708 aa20.73■□□□□ 0.91
SYNE1-227ENST00000489156 AMOTQ4VCS5 1084 aa20.73■□□□□ 0.91
SYNE1-227ENST00000489156 DLG5Q8TDM6 1919 aa20.73■□□□□ 0.91
SYNE1-227ENST00000489156 THSD7AQ9UPZ6 1657 aa20.73■□□□□ 0.91
SYNE1-227ENST00000489156 SHANK3Q9BYB0 1731 aa20.73■□□□□ 0.91
SYNE1-227ENST00000489156 DDB1Q16531 1140 aa20.73■□□□□ 0.91
SYNE1-227ENST00000489156 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.73■□□□□ 0.91
SYNE1-227ENST00000489156 SPG7Q9UQ90 795 aa20.73■□□□□ 0.91
SYNE1-227ENST00000489156 LRRC37A3O60309 1634 aa20.72■□□□□ 0.91
SYNE1-227ENST00000489156 SEPT12Q8IYM1 358 aa20.71■□□□□ 0.91
SYNE1-227ENST00000489156 RIPK4P57078 832 aa20.71■□□□□ 0.91
SYNE1-227ENST00000489156 ZNF530Q6P9A1 599 aaPredicted RBP20.71■□□□□ 0.91
SYNE1-227ENST00000489156 DDX54Q8TDD1 881 aaKnown RBP20.71■□□□□ 0.91
SYNE1-227ENST00000489156 SPINK5Q9NQ38 1064 aaPredicted RBP20.71■□□□□ 0.91
SYNE1-227ENST00000489156 PLEKHG2Q9H7P9 1386 aa20.7■□□□□ 0.9
SYNE1-227ENST00000489156 KAT6BQ8WYB5 2073 aa20.7■□□□□ 0.9
SYNE1-227ENST00000489156 GAS2L2Q8NHY3 880 aa20.7■□□□□ 0.9
SYNE1-227ENST00000489156 TRIM35Q9UPQ4 493 aa20.7■□□□□ 0.9
SYNE1-227ENST00000489156 BRWD3Q6RI45 1802 aa20.7■□□□□ 0.9
SYNE1-227ENST00000489156 CYP27B1O15528 508 aa20.69■□□□□ 0.9
SYNE1-227ENST00000489156 NFE2L2Q16236 605 aa20.69■□□□□ 0.9
SYNE1-227ENST00000489156 TNS2Q63HR2 1409 aa20.69■□□□□ 0.9
SYNE1-227ENST00000489156 IL16Q14005 1332 aa20.68■□□□□ 0.9
SYNE1-227ENST00000489156 PCDH11XQ9BZA7 1347 aa20.68■□□□□ 0.9
SYNE1-227ENST00000489156 PCDH11YQ9BZA8 1340 aa20.68■□□□□ 0.9
SYNE1-227ENST00000489156 MYH16Q9H6N6 1097 aa20.67■□□□□ 0.9
SYNE1-227ENST00000489156 VIRMAQ69YN4 1812 aaKnown RBP20.67■□□□□ 0.9
SYNE1-227ENST00000489156 C1orf141Q5JVX7 400 aa20.67■□□□□ 0.9
SYNE1-227ENST00000489156 IFNL2Q8IZJ0 200 aa20.67■□□□□ 0.9
SYNE1-227ENST00000489156 PHKG2P15735 406 aa20.66■□□□□ 0.9
SYNE1-227ENST00000489156 LMOD3Q0VAK6 560 aa20.65■□□□□ 0.9
SYNE1-227ENST00000489156 AKAP4Q5JQC9 854 aa20.65■□□□□ 0.9
SYNE1-227ENST00000489156 GNAT3A8MTJ3 354 aa20.64■□□□□ 0.9
SYNE1-227ENST00000489156 MARCH10Q8NA82 808 aaPredicted RBP20.64■□□□□ 0.9
SYNE1-227ENST00000489156 RGS12O14924 1447 aa20.64■□□□□ 0.9
SYNE1-227ENST00000489156 RRP1P56182 461 aaKnown RBP20.64■□□□□ 0.89
SYNE1-227ENST00000489156 CALD1Q05682 793 aaKnown RBP20.64■□□□□ 0.89
SYNE1-227ENST00000489156 MAP3K5Q99683 1374 aa20.63■□□□□ 0.89
SYNE1-227ENST00000489156 MPRIPQ6WCQ1 1025 aa20.63■□□□□ 0.89
SYNE1-227ENST00000489156 FAM182BQ5T319 152 aa20.62■□□□□ 0.89
SYNE1-227ENST00000489156 DCTN1Q14203 1278 aa20.62■□□□□ 0.89
SYNE1-227ENST00000489156 RTF1Q92541 710 aaKnown RBP20.61■□□□□ 0.89
SYNE1-227ENST00000489156 LGR6Q9HBX8 967 aa20.61■□□□□ 0.89
SYNE1-227ENST00000489156 IRX6P78412 446 aaPredicted RBP20.6■□□□□ 0.89
SYNE1-227ENST00000489156 MCM10Q7L590 875 aa20.6■□□□□ 0.89
SYNE1-227ENST00000489156 KRT27Q7Z3Y8 459 aa20.6■□□□□ 0.89
SYNE1-227ENST00000489156 SCN11AQ9UI33 1791 aa20.6■□□□□ 0.89
SYNE1-227ENST00000489156 CT47B1P0C2W7 299 aaPredicted RBP20.6■□□□□ 0.89
SYNE1-227ENST00000489156 NKX1-1Q15270 411 aaPredicted RBP20.6■□□□□ 0.89
SYNE1-227ENST00000489156 IL17REQ8NFR9 667 aa20.6■□□□□ 0.89
SYNE1-227ENST00000489156 HSP90AB1P08238 724 aaKnown RBP20.59■□□□□ 0.89
SYNE1-227ENST00000489156 THUMPD2Q9BTF0 503 aaKnown RBP20.59■□□□□ 0.89
SYNE1-227ENST00000489156 RNMTO43148 476 aaKnown RBP20.58■□□□□ 0.89
SYNE1-227ENST00000489156 HTATSF1O43719 755 aaKnown RBP20.58■□□□□ 0.89
SYNE1-227ENST00000489156 DCAF5Q96JK2 942 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms