RNA–Protein interactions for RNA: ENST00000489037.1

BRCA1-218, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 4

Gene BRCA1, Length 455 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-218ENST00000489037 CNGB1Q14028 1251 aaPredicted RBP19.38■□□□□ 0.69
BRCA1-218ENST00000489037 EIF4A2Q14240 407 aaKnown RBP19.38■□□□□ 0.69
BRCA1-218ENST00000489037 EYA1Q99502 592 aa19.38■□□□□ 0.69
BRCA1-218ENST00000489037 NPC1L1Q9UHC9 1359 aa19.37■□□□□ 0.69
BRCA1-218ENST00000489037 NBPF14Q5TI25 921 aa19.37■□□□□ 0.69
BRCA1-218ENST00000489037 NHSQ6T4R5 1651 aa19.36■□□□□ 0.69
BRCA1-218ENST00000489037 RGPD3A6NKT7 1758 aaPredicted RBP19.36■□□□□ 0.69
BRCA1-218ENST00000489037 RGPD4Q7Z3J3 1758 aa19.36■□□□□ 0.69
BRCA1-218ENST00000489037 PCDH11XQ9BZA7 1347 aa19.35■□□□□ 0.69
BRCA1-218ENST00000489037 PCDH11YQ9BZA8 1340 aa19.35■□□□□ 0.69
BRCA1-218ENST00000489037 KCNQ2O43526 872 aa19.35■□□□□ 0.69
BRCA1-218ENST00000489037 ZEB1P37275 1124 aaPredicted RBP19.35■□□□□ 0.69
BRCA1-218ENST00000489037 SPG7Q9UQ90 795 aa19.35■□□□□ 0.69
BRCA1-218ENST00000489037 SHANK3Q9BYB0 1731 aa19.34■□□□□ 0.69
BRCA1-218ENST00000489037 PTF1AQ7RTS3 328 aa19.34■□□□□ 0.69
BRCA1-218ENST00000489037 RREB1Q92766 1687 aa19.33■□□□□ 0.69
BRCA1-218ENST00000489037 MTHFSP49914 203 aa19.33■□□□□ 0.68
BRCA1-218ENST00000489037 SYTL4Q96C24 671 aaPredicted RBP19.33■□□□□ 0.68
BRCA1-218ENST00000489037 NCAPD2Q15021 1401 aa19.33■□□□□ 0.68
BRCA1-218ENST00000489037 BTAF1O14981 1849 aa19.32■□□□□ 0.68
BRCA1-218ENST00000489037 PSDA5PKW4 1024 aaPredicted RBP19.31■□□□□ 0.68
BRCA1-218ENST00000489037 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.31■□□□□ 0.684e-6■■■■■ 27.4
BRCA1-218ENST00000489037 NUP188Q5SRE5 1749 aa19.31■□□□□ 0.68
BRCA1-218ENST00000489037 IGSF1Q8N6C5 1336 aa19.3■□□□□ 0.68
BRCA1-218ENST00000489037 PRIM1P49642 420 aaKnown RBP19.3■□□□□ 0.68
BRCA1-218ENST00000489037 PKD1L3Q7Z443 1732 aa19.3■□□□□ 0.68
BRCA1-218ENST00000489037 DOT1LQ8TEK3 1739 aa19.3■□□□□ 0.68
BRCA1-218ENST00000489037 R3HDM1Q15032 1099 aaKnown RBP19.29■□□□□ 0.68
BRCA1-218ENST00000489037 TXNRD1Q16881 649 aa19.28■□□□□ 0.68
BRCA1-218ENST00000489037 PLEKHG2Q9H7P9 1386 aa19.28■□□□□ 0.68
BRCA1-218ENST00000489037 CYP27B1O15528 508 aa19.27■□□□□ 0.68
BRCA1-218ENST00000489037 IL13P35225 146 aa19.27■□□□□ 0.68
BRCA1-218ENST00000489037 PLEKHO1Q53GL0 409 aaPredicted RBP19.27■□□□□ 0.68
BRCA1-218ENST00000489037 DIAPH1O60610 1272 aaKnown RBP19.26■□□□□ 0.67
BRCA1-218ENST00000489037 SULT6B1Q6IMI4 303 aa19.26■□□□□ 0.67
BRCA1-218ENST00000489037 IFNL2Q8IZJ0 200 aa19.26■□□□□ 0.67
BRCA1-218ENST00000489037 AMOTQ4VCS5 1084 aa19.25■□□□□ 0.67
BRCA1-218ENST00000489037 CFAP53Q96M91 514 aa19.25■□□□□ 0.67
BRCA1-218ENST00000489037 PROM2Q8N271 834 aa19.24■□□□□ 0.67
BRCA1-218ENST00000489037 STK32BQ9NY57 414 aa19.23■□□□□ 0.67
BRCA1-218ENST00000489037 ITGB4P16144 1822 aa19.23■□□□□ 0.67
BRCA1-218ENST00000489037 HSP90AB1P08238 724 aaKnown RBP19.22■□□□□ 0.67
BRCA1-218ENST00000489037 PHKG2P15735 406 aa19.22■□□□□ 0.67
BRCA1-218ENST00000489037 NKX1-1Q15270 411 aaPredicted RBP19.22■□□□□ 0.67
BRCA1-218ENST00000489037 SLC27A3Q5K4L6 730 aa19.22■□□□□ 0.67
BRCA1-218ENST00000489037 MPRIPQ6WCQ1 1025 aa19.22■□□□□ 0.67
BRCA1-218ENST00000489037 C1orf141Q5JVX7 400 aa19.21■□□□□ 0.67
BRCA1-218ENST00000489037 AEBP1Q8IUX7 1158 aa19.21■□□□□ 0.67
BRCA1-218ENST00000489037 HMGB2P26583 209 aaKnown RBP19.2■□□□□ 0.66
BRCA1-218ENST00000489037 ZNF530Q6P9A1 599 aaPredicted RBP19.2■□□□□ 0.66
BRCA1-218ENST00000489037 KDRP35968 1356 aa19.19■□□□□ 0.66
BRCA1-218ENST00000489037 U2SURPO15042 1029 aaKnown RBP19.19■□□□□ 0.66
BRCA1-218ENST00000489037 HMOX1P09601 288 aa19.19■□□□□ 0.66
BRCA1-218ENST00000489037 NUDCQ9Y266 331 aa19.19■□□□□ 0.66
BRCA1-218ENST00000489037 PPP2R1AP30153 589 aa19.18■□□□□ 0.66
BRCA1-218ENST00000489037 DDX10Q13206 875 aaKnown RBP19.18■□□□□ 0.66
BRCA1-218ENST00000489037 SMARCC1Q92922 1105 aaPredicted RBP19.18■□□□□ 0.66
BRCA1-218ENST00000489037 TMOD3Q9NYL9 352 aa19.18■□□□□ 0.66
BRCA1-218ENST00000489037 LY75O60449 1722 aa19.17■□□□□ 0.66
BRCA1-218ENST00000489037 SLC15A2Q16348 729 aa19.17■□□□□ 0.66
BRCA1-218ENST00000489037 ANO8Q9HCE9 1232 aaPredicted RBP19.17■□□□□ 0.66
BRCA1-218ENST00000489037 TOGARAM1Q9Y4F4 1720 aa19.17■□□□□ 0.66
BRCA1-218ENST00000489037 DCAF5Q96JK2 942 aa19.16■□□□□ 0.66
BRCA1-218ENST00000489037 CCNL1Q9UK58 526 aaPredicted RBP19.16■□□□□ 0.66
BRCA1-218ENST00000489037 ERVV-2B6SEH9 535 aa19.15■□□□□ 0.66
BRCA1-218ENST00000489037 PIGBQ92521 554 aa19.15■□□□□ 0.66
BRCA1-218ENST00000489037 LRRC4BQ9NT99 713 aa19.14■□□□□ 0.65
BRCA1-218ENST00000489037 COL3A1P02461 1466 aaPredicted RBP19.14■□□□□ 0.65
BRCA1-218ENST00000489037 PALLDQ8WX93 1383 aa19.13■□□□□ 0.65
BRCA1-218ENST00000489037 LRP5O75197 1615 aa19.13■□□□□ 0.65
BRCA1-218ENST00000489037 CABP4P57796 275 aa19.12■□□□□ 0.65
BRCA1-218ENST00000489037 AKAP4Q5JQC9 854 aa19.12■□□□□ 0.65
BRCA1-218ENST00000489037 RALBP1Q15311 655 aa19.11■□□□□ 0.65
BRCA1-218ENST00000489037 SPON1Q9HCB6 807 aa19.11■□□□□ 0.65
BRCA1-218ENST00000489037 KCNQ4P56696 695 aa19.1■□□□□ 0.65
BRCA1-218ENST00000489037 PAPPAQ13219 1627 aa19.1■□□□□ 0.65
BRCA1-218ENST00000489037 U2AF1L5P0DN76 240 aaPredicted RBP19.09■□□□□ 0.65
BRCA1-218ENST00000489037 U2AF1Q01081 240 aaKnown RBP eCLIP19.09■□□□□ 0.65
BRCA1-218ENST00000489037 TFCP2L1Q9NZI6 479 aa19.09■□□□□ 0.65
BRCA1-218ENST00000489037 VIRMAQ69YN4 1812 aaKnown RBP19.09■□□□□ 0.65
BRCA1-218ENST00000489037 SCN11AQ9UI33 1791 aa19.09■□□□□ 0.65
BRCA1-218ENST00000489037 GAS2L2Q8NHY3 880 aa19.08■□□□□ 0.64
BRCA1-218ENST00000489037 AKT1S1Q96B36 256 aa19.08■□□□□ 0.64
BRCA1-218ENST00000489037 ZNF827Q17R98 1081 aa19.07■□□□□ 0.64
BRCA1-218ENST00000489037 MTHFSDQ2M296 383 aaKnown RBP19.07■□□□□ 0.64
BRCA1-218ENST00000489037 PPP1R1BQ9UD71 204 aaPredicted RBP19.07■□□□□ 0.64
BRCA1-218ENST00000489037 ASAP1Q9ULH1 1129 aa19.07■□□□□ 0.64
BRCA1-218ENST00000489037 KDM6AO15550 1401 aaPredicted RBP19.07■□□□□ 0.64
BRCA1-218ENST00000489037 TAF1LQ8IZX4 1826 aa19.07■□□□□ 0.64
BRCA1-218ENST00000489037 CASZ1Q86V15 1759 aa19.06■□□□□ 0.64
BRCA1-218ENST00000489037 C5P01031 1676 aa19.06■□□□□ 0.64
BRCA1-218ENST00000489037 LOC102724428A0A0B4J2F2 783 aa19.06■□□□□ 0.64
BRCA1-218ENST00000489037 NEFMP07197 916 aa19.06■□□□□ 0.64
BRCA1-218ENST00000489037 SIK1P57059 783 aa19.06■□□□□ 0.64
BRCA1-218ENST00000489037 ATG3Q9NT62 314 aa19.06■□□□□ 0.64
BRCA1-218ENST00000489037 QSER1Q2KHR3 1735 aa19.05■□□□□ 0.64
BRCA1-218ENST00000489037 ZBTB7AO95365 584 aa19.05■□□□□ 0.64
BRCA1-218ENST00000489037 PRKAR2BP31323 418 aa19.05■□□□□ 0.64
BRCA1-218ENST00000489037 NFATC2IPQ8NCF5 419 aa19.05■□□□□ 0.64
BRCA1-218ENST00000489037 FCHSD2O94868 740 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms