RNA–Protein interactions for RNA: ENST00000488058.1

RNF38-208, Transcript of ring finger protein 38, human

TSL 3

Gene RNF38, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF38-208	ENST00000488058	RGPD4	Q7Z3J3	1758 aa		32.48	■■■□□ 2.79
RNF38-208	ENST00000488058	MORC1	Q86VD1	984 aa		32.48	■■■□□ 2.79
RNF38-208	ENST00000488058	WASHC2A	Q641Q2	1341 aa		32.48	■■■□□ 2.79
RNF38-208	ENST00000488058	ZCRB1	Q8TBF4	217 aa	Known RBP	32.47	■■■□□ 2.79
RNF38-208	ENST00000488058	SHANK3	Q9BYB0	1731 aa		32.46	■■■□□ 2.79
RNF38-208	ENST00000488058	PLSCR1	O15162	318 aa		32.46	■■■□□ 2.79
RNF38-208	ENST00000488058	TAT	P17735	454 aa	Predicted RBP	32.46	■■■□□ 2.79
RNF38-208	ENST00000488058	NBPF14	Q5TI25	921 aa		32.44	■■■□□ 2.78
RNF38-208	ENST00000488058	BTAF1	O14981	1849 aa		32.4	■■■□□ 2.78
RNF38-208	ENST00000488058	DOT1L	Q8TEK3	1739 aa		32.4	■■■□□ 2.78
RNF38-208	ENST00000488058	AMER1	Q5JTC6	1135 aa	Predicted RBP	32.38	■■■□□ 2.77
RNF38-208	ENST00000488058	EYA1	Q99502	592 aa		32.38	■■■□□ 2.77
RNF38-208	ENST00000488058	EIF4A2	Q14240	407 aa	Known RBP	32.37	■■■□□ 2.77
RNF38-208	ENST00000488058	SYTL4	Q96C24	671 aa	Predicted RBP	32.37	■■■□□ 2.77
RNF38-208	ENST00000488058	TXNRD1	Q16881	649 aa		32.35	■■■□□ 2.77
RNF38-208	ENST00000488058	PROM2	Q8N271	834 aa		32.34	■■■□□ 2.77
RNF38-208	ENST00000488058	NCAPD2	Q15021	1401 aa		32.34	■■■□□ 2.77
RNF38-208	ENST00000488058	PCDH11X	Q9BZA7	1347 aa		32.33	■■■□□ 2.77
RNF38-208	ENST00000488058	PCDH11Y	Q9BZA8	1340 aa		32.33	■■■□□ 2.77
RNF38-208	ENST00000488058	CNGB1	Q14028	1251 aa	Predicted RBP	32.32	■■■□□ 2.76
RNF38-208	ENST00000488058	CC2D1B	Q5T0F9	858 aa	Known RBP	32.32	■■■□□ 2.76
RNF38-208	ENST00000488058	PER1	O15534	1290 aa	Predicted RBP	32.31	■■■□□ 2.76
RNF38-208	ENST00000488058	PRIM1	P49642	420 aa	Known RBP	32.31	■■■□□ 2.76
RNF38-208	ENST00000488058	PKD1L3	Q7Z443	1732 aa		32.31	■■■□□ 2.76
RNF38-208	ENST00000488058	ANO8	Q9HCE9	1232 aa	Predicted RBP	32.29	■■■□□ 2.76
RNF38-208	ENST00000488058	LRP5	O75197	1615 aa		32.29	■■■□□ 2.76
RNF38-208	ENST00000488058	SPG7	Q9UQ90	795 aa		32.26	■■■□□ 2.75
RNF38-208	ENST00000488058	CYP27B1	O15528	508 aa		32.25	■■■□□ 2.75
RNF38-208	ENST00000488058	IGSF1	Q8N6C5	1336 aa		32.24	■■■□□ 2.75
RNF38-208	ENST00000488058	STK32B	Q9NY57	414 aa		32.23	■■■□□ 2.75
RNF38-208	ENST00000488058	MTHFS	P49914	203 aa		32.19	■■■□□ 2.74
RNF38-208	ENST00000488058	TOGARAM1	Q9Y4F4	1720 aa		32.18	■■■□□ 2.74
RNF38-208	ENST00000488058	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	32.17	■■■□□ 2.74
RNF38-208	ENST00000488058	SLC15A2	Q16348	729 aa		32.16	■■■□□ 2.74
RNF38-208	ENST00000488058	MPRIP	Q6WCQ1	1025 aa		32.16	■■■□□ 2.74
RNF38-208	ENST00000488058	NPC1L1	Q9UHC9	1359 aa		32.16	■■■□□ 2.74
RNF38-208	ENST00000488058	PAPPA	Q13219	1627 aa		32.15	■■■□□ 2.74
RNF38-208	ENST00000488058	ITGB4	P16144	1822 aa		32.15	■■■□□ 2.74
RNF38-208	ENST00000488058	LRRC4B	Q9NT99	713 aa		32.15	■■■□□ 2.74
RNF38-208	ENST00000488058	LY75	O60449	1722 aa		32.14	■■■□□ 2.74
RNF38-208	ENST00000488058	IL13	P35225	146 aa		32.14	■■■□□ 2.74
RNF38-208	ENST00000488058	AEBP1	Q8IUX7	1158 aa		32.14	■■■□□ 2.74
RNF38-208	ENST00000488058	KCNQ4	P56696	695 aa		32.13	■■■□□ 2.73
RNF38-208	ENST00000488058	SLC27A3	Q5K4L6	730 aa		32.13	■■■□□ 2.73
RNF38-208	ENST00000488058	SULT6B1	Q6IMI4	303 aa		32.13	■■■□□ 2.73
RNF38-208	ENST00000488058	IFNL2	Q8IZJ0	200 aa		32.13	■■■□□ 2.73
RNF38-208	ENST00000488058	CASZ1	Q86V15	1759 aa		32.12	■■■□□ 2.73
RNF38-208	ENST00000488058	PHKG2	P15735	406 aa		32.12	■■■□□ 2.73
RNF38-208	ENST00000488058	NKX1-1	Q15270	411 aa	Predicted RBP	32.11	■■■□□ 2.73
RNF38-208	ENST00000488058	PDGFD	Q9GZP0	370 aa	Predicted RBP	32.11	■■■□□ 2.73
RNF38-208	ENST00000488058	PLEKHO1	Q53GL0	409 aa	Predicted RBP	32.1	■■■□□ 2.73
RNF38-208	ENST00000488058	SPON1	Q9HCB6	807 aa		32.09	■■■□□ 2.73
RNF38-208	ENST00000488058	CCNL1	Q9UK58	526 aa	Predicted RBP	32.09	■■■□□ 2.73
RNF38-208	ENST00000488058	PLEKHG2	Q9H7P9	1386 aa		32.08	■■■□□ 2.73
RNF38-208	ENST00000488058	ZNF827	Q17R98	1081 aa		32.08	■■■□□ 2.73
RNF38-208	ENST00000488058	SRCAP	Q6ZRS2	3230 aa		32.07	■■■□□ 2.72
RNF38-208	ENST00000488058	ZNF530	Q6P9A1	599 aa	Predicted RBP	32.06	■■■□□ 2.72
RNF38-208	ENST00000488058	DIAPH1	O60610	1272 aa	Known RBP	32.05	■■■□□ 2.72
RNF38-208	ENST00000488058	ZBTB7A	O95365	584 aa		32.05	■■■□□ 2.72
RNF38-208	ENST00000488058	AMOT	Q4VCS5	1084 aa		32.05	■■■□□ 2.72
RNF38-208	ENST00000488058	PALLD	Q8WX93	1383 aa		32.05	■■■□□ 2.72
RNF38-208	ENST00000488058	PIGB	Q92521	554 aa		32.04	■■■□□ 2.72
RNF38-208	ENST00000488058	TMOD3	Q9NYL9	352 aa		32.04	■■■□□ 2.72
RNF38-208	ENST00000488058	HMOX1	P09601	288 aa		32.03	■■■□□ 2.72
RNF38-208	ENST00000488058	KDR	P35968	1356 aa		32.03	■■■□□ 2.72
RNF38-208	ENST00000488058	PPP1R1B	Q9UD71	204 aa	Predicted RBP	32.02	■■■□□ 2.72
RNF38-208	ENST00000488058	SMARCC1	Q92922	1105 aa	Predicted RBP	32.01	■■■□□ 2.71
RNF38-208	ENST00000488058	AKT1S1	Q96B36	256 aa		32.01	■■■□□ 2.71
RNF38-208	ENST00000488058	HSP90AB1	P08238	724 aa	Known RBP	32	■■■□□ 2.71
RNF38-208	ENST00000488058	C1orf141	Q5JVX7	400 aa		32	■■■□□ 2.71
RNF38-208	ENST00000488058	ATF5	Q9Y2D1	282 aa	Predicted RBP	31.99	■■■□□ 2.71
RNF38-208	ENST00000488058	TUBGCP6	Q96RT7	1819 aa		31.98	■■■□□ 2.71
RNF38-208	ENST00000488058	TFCP2L1	Q9NZI6	479 aa		31.98	■■■□□ 2.71
RNF38-208	ENST00000488058	C5	P01031	1676 aa		31.98	■■■□□ 2.71
RNF38-208	ENST00000488058	COL3A1	P02461	1466 aa	Predicted RBP	31.97	■■■□□ 2.71
RNF38-208	ENST00000488058	U2SURP	O15042	1029 aa	Known RBP	31.97	■■■□□ 2.71
RNF38-208	ENST00000488058	DCAF5	Q96JK2	942 aa		31.97	■■■□□ 2.71
RNF38-208	ENST00000488058	QSER1	Q2KHR3	1735 aa		31.96	■■■□□ 2.71
RNF38-208	ENST00000488058	KDM6A	O15550	1401 aa	Predicted RBP	31.94	■■■□□ 2.7
RNF38-208	ENST00000488058	TAF1L	Q8IZX4	1826 aa		31.94	■■■□□ 2.7
RNF38-208	ENST00000488058	CFAP53	Q96M91	514 aa		31.94	■■■□□ 2.7
RNF38-208	ENST00000488058	MTFR1L	Q9H019	292 aa		31.93	■■■□□ 2.7
RNF38-208	ENST00000488058	ASAP1	Q9ULH1	1129 aa		31.93	■■■□□ 2.7
RNF38-208	ENST00000488058	ERVV-2	B6SEH9	535 aa		31.92	■■■□□ 2.7
RNF38-208	ENST00000488058	PNPLA7	Q6ZV29	1317 aa		31.92	■■■□□ 2.7
RNF38-208	ENST00000488058	PPP2R1A	P30153	589 aa		31.91	■■■□□ 2.7
RNF38-208	ENST00000488058	CABP4	P57796	275 aa		31.91	■■■□□ 2.7
RNF38-208	ENST00000488058	ATG3	Q9NT62	314 aa		31.89	■■■□□ 2.7
RNF38-208	ENST00000488058	LOC102724428	A0A0B4J2F2	783 aa		31.88	■■■□□ 2.69
RNF38-208	ENST00000488058	MSH5	O43196	834 aa		31.88	■■■□□ 2.69
RNF38-208	ENST00000488058	SIK1	P57059	783 aa		31.88	■■■□□ 2.69
RNF38-208	ENST00000488058	C4B	P0C0L5	1744 aa		31.87	■■■□□ 2.69
RNF38-208	ENST00000488058	PTGER2	P43116	358 aa		31.87	■■■□□ 2.69
RNF38-208	ENST00000488058	AKAP4	Q5JQC9	854 aa		31.87	■■■□□ 2.69
RNF38-208	ENST00000488058	SCN11A	Q9UI33	1791 aa		31.86	■■■□□ 2.69
RNF38-208	ENST00000488058	HMGB2	P26583	209 aa	Known RBP	31.86	■■■□□ 2.69
RNF38-208	ENST00000488058	ATP6V1A	P38606	617 aa		31.84	■■■□□ 2.69
RNF38-208	ENST00000488058	MTHFSD	Q2M296	383 aa	Known RBP	31.84	■■■□□ 2.69
RNF38-208	ENST00000488058	AK7	Q96M32	723 aa		31.84	■■■□□ 2.69
RNF38-208	ENST00000488058	RBM42	Q9BTD8	480 aa	Known RBP	31.83	■■■□□ 2.69

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms