RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 TATP17735 454 aaPredicted RBP27.98■■■□□ 2.07
HDAC4-209ENST00000487617 NUP188Q5SRE5 1749 aa27.95■■■□□ 2.06
HDAC4-209ENST00000487617 MAP2P11137 1827 aaKnown RBP27.95■■■□□ 2.06
HDAC4-209ENST00000487617 NHSQ6T4R5 1651 aa27.94■■■□□ 2.06
HDAC4-209ENST00000487617 PROM2Q8N271 834 aa27.93■■■□□ 2.06
HDAC4-209ENST00000487617 RGPD3A6NKT7 1758 aaPredicted RBP27.93■■■□□ 2.06
HDAC4-209ENST00000487617 RGPD4Q7Z3J3 1758 aa27.93■■■□□ 2.06
HDAC4-209ENST00000487617 AMER1Q5JTC6 1135 aaPredicted RBP27.92■■■□□ 2.06
HDAC4-209ENST00000487617 EYA1Q99502 592 aa27.92■■■□□ 2.06
HDAC4-209ENST00000487617 TXNRD1Q16881 649 aa27.91■■■□□ 2.06
HDAC4-209ENST00000487617 EIF4A2Q14240 407 aaKnown RBP27.9■■■□□ 2.06
HDAC4-209ENST00000487617 PRIM1P49642 420 aaKnown RBP27.89■■■□□ 2.06
HDAC4-209ENST00000487617 SYTL4Q96C24 671 aaPredicted RBP27.89■■■□□ 2.06
HDAC4-209ENST00000487617 NCAPD2Q15021 1401 aa27.88■■■□□ 2.05
HDAC4-209ENST00000487617 PCDH11XQ9BZA7 1347 aa27.88■■■□□ 2.05
HDAC4-209ENST00000487617 PCDH11YQ9BZA8 1340 aa27.88■■■□□ 2.05
HDAC4-209ENST00000487617 PER1O15534 1290 aaPredicted RBP27.87■■■□□ 2.05
HDAC4-209ENST00000487617 ANO8Q9HCE9 1232 aaPredicted RBP27.86■■■□□ 2.05
HDAC4-209ENST00000487617 SHANK3Q9BYB0 1731 aa27.86■■■□□ 2.05
HDAC4-209ENST00000487617 KAT6BQ8WYB5 2073 aa27.83■■■□□ 2.05
HDAC4-209ENST00000487617 CC2D1BQ5T0F9 858 aaKnown RBP27.83■■■□□ 2.05
HDAC4-209ENST00000487617 BTAF1O14981 1849 aa27.83■■■□□ 2.05
HDAC4-209ENST00000487617 SRCAPQ6ZRS2 3230 aa27.82■■■□□ 2.04
HDAC4-209ENST00000487617 CYP27B1O15528 508 aa27.82■■■□□ 2.04
HDAC4-209ENST00000487617 SPG7Q9UQ90 795 aa27.82■■■□□ 2.04
HDAC4-209ENST00000487617 LRP5O75197 1615 aa27.81■■■□□ 2.04
HDAC4-209ENST00000487617 STK32BQ9NY57 414 aa27.8■■■□□ 2.04
HDAC4-209ENST00000487617 IGSF1Q8N6C5 1336 aa27.8■■■□□ 2.04
HDAC4-209ENST00000487617 DOT1LQ8TEK3 1739 aa27.79■■■□□ 2.04
HDAC4-209ENST00000487617 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.78■■■□□ 2.04
HDAC4-209ENST00000487617 CNGB1Q14028 1251 aaPredicted RBP27.77■■■□□ 2.04
HDAC4-209ENST00000487617 SLC15A2Q16348 729 aa27.76■■■□□ 2.03
HDAC4-209ENST00000487617 PKD1L3Q7Z443 1732 aa27.75■■■□□ 2.03
HDAC4-209ENST00000487617 MTHFSP49914 203 aa27.75■■■□□ 2.03
HDAC4-209ENST00000487617 LRRC4BQ9NT99 713 aa27.75■■■□□ 2.03
HDAC4-209ENST00000487617 NPC1L1Q9UHC9 1359 aa27.74■■■□□ 2.03
HDAC4-209ENST00000487617 SLC27A3Q5K4L6 730 aa27.74■■■□□ 2.03
HDAC4-209ENST00000487617 IL13P35225 146 aa27.72■■■□□ 2.03
HDAC4-209ENST00000487617 NKX1-1Q15270 411 aaPredicted RBP27.72■■■□□ 2.03
HDAC4-209ENST00000487617 MPRIPQ6WCQ1 1025 aa27.72■■■□□ 2.03
HDAC4-209ENST00000487617 IFNL2Q8IZJ0 200 aa27.71■■■□□ 2.03
HDAC4-209ENST00000487617 SPON1Q9HCB6 807 aa27.71■■■□□ 2.03
HDAC4-209ENST00000487617 PLEKHG2Q9H7P9 1386 aa27.71■■■□□ 2.03
HDAC4-209ENST00000487617 PHKG2P15735 406 aa27.7■■■□□ 2.02
HDAC4-209ENST00000487617 AEBP1Q8IUX7 1158 aa27.7■■■□□ 2.02
HDAC4-209ENST00000487617 PDGFDQ9GZP0 370 aaPredicted RBP27.7■■■□□ 2.02
HDAC4-209ENST00000487617 KCNQ4P56696 695 aa27.69■■■□□ 2.02
HDAC4-209ENST00000487617 SULT6B1Q6IMI4 303 aa27.69■■■□□ 2.02
HDAC4-209ENST00000487617 PLEKHO1Q53GL0 409 aaPredicted RBP27.68■■■□□ 2.02
HDAC4-209ENST00000487617 ZNF827Q17R98 1081 aa27.67■■■□□ 2.02
HDAC4-209ENST00000487617 CCNL1Q9UK58 526 aaPredicted RBP27.67■■■□□ 2.02
HDAC4-209ENST00000487617 PAPPAQ13219 1627 aa27.67■■■□□ 2.02
HDAC4-209ENST00000487617 ZBTB7AO95365 584 aa27.65■■■□□ 2.02
HDAC4-209ENST00000487617 AMOTQ4VCS5 1084 aa27.65■■■□□ 2.02
HDAC4-209ENST00000487617 PIGBQ92521 554 aa27.64■■■□□ 2.02
HDAC4-209ENST00000487617 AKT1S1Q96B36 256 aa27.64■■■□□ 2.02
HDAC4-209ENST00000487617 TOGARAM1Q9Y4F4 1720 aa27.64■■■□□ 2.01
HDAC4-209ENST00000487617 PALLDQ8WX93 1383 aa27.63■■■□□ 2.01
HDAC4-209ENST00000487617 DIAPH1O60610 1272 aaKnown RBP27.63■■■□□ 2.01
HDAC4-209ENST00000487617 ZNF530Q6P9A1 599 aaPredicted RBP27.63■■■□□ 2.01
HDAC4-209ENST00000487617 CASZ1Q86V15 1759 aa27.63■■■□□ 2.01
HDAC4-209ENST00000487617 SMARCC1Q92922 1105 aaPredicted RBP27.62■■■□□ 2.01
HDAC4-209ENST00000487617 TMOD3Q9NYL9 352 aa27.62■■■□□ 2.01
HDAC4-209ENST00000487617 PPP1R1BQ9UD71 204 aaPredicted RBP27.62■■■□□ 2.01
HDAC4-209ENST00000487617 KDRP35968 1356 aa27.61■■■□□ 2.01
HDAC4-209ENST00000487617 LY75O60449 1722 aa27.61■■■□□ 2.01
HDAC4-209ENST00000487617 HSP90AB1P08238 724 aaKnown RBP27.61■■■□□ 2.01
HDAC4-209ENST00000487617 ATF5Q9Y2D1 282 aaPredicted RBP27.6■■■□□ 2.01
HDAC4-209ENST00000487617 TFCP2L1Q9NZI6 479 aa27.59■■■□□ 2.01
HDAC4-209ENST00000487617 HMOX1P09601 288 aa27.58■■■□□ 2.01
HDAC4-209ENST00000487617 C1orf141Q5JVX7 400 aa27.58■■■□□ 2.01
HDAC4-209ENST00000487617 DCAF5Q96JK2 942 aa27.58■■■□□ 2.01
HDAC4-209ENST00000487617 MTFR1LQ9H019 292 aa27.57■■■□□ 2
HDAC4-209ENST00000487617 ITGB4P16144 1822 aa27.57■■■□□ 2
HDAC4-209ENST00000487617 ERVV-2B6SEH9 535 aa27.55■■■□□ 2
HDAC4-209ENST00000487617 HMGB2P26583 209 aaKnown RBP27.54■■■□□ 2
HDAC4-209ENST00000487617 PNPLA7Q6ZV29 1317 aa27.54■■■□□ 2
HDAC4-209ENST00000487617 ASAP1Q9ULH1 1129 aa27.54■■■□□ 2
HDAC4-209ENST00000487617 PTGER2P43116 358 aa27.53■■■□□ 2
HDAC4-209ENST00000487617 COL3A1P02461 1466 aaPredicted RBP27.52■■■□□ 2
HDAC4-209ENST00000487617 KDM6AO15550 1401 aaPredicted RBP27.52■■■□□ 2
HDAC4-209ENST00000487617 U2SURPO15042 1029 aaKnown RBP27.52■■■□□ 2
HDAC4-209ENST00000487617 CFAP53Q96M91 514 aa27.52■■■□□ 2
HDAC4-209ENST00000487617 LOC102724428A0A0B4J2F2 783 aa27.51■■□□□ 1.99
HDAC4-209ENST00000487617 SIK1P57059 783 aa27.51■■□□□ 1.99
HDAC4-209ENST00000487617 CABP4P57796 275 aa27.51■■□□□ 1.99
HDAC4-209ENST00000487617 ATG3Q9NT62 314 aa27.51■■□□□ 1.99
HDAC4-209ENST00000487617 PPP2R1AP30153 589 aa27.49■■□□□ 1.99
HDAC4-209ENST00000487617 AKAP4Q5JQC9 854 aa27.49■■□□□ 1.99
HDAC4-209ENST00000487617 SLC16A10Q8TF71 515 aa27.49■■□□□ 1.99
HDAC4-209ENST00000487617 MSH5O43196 834 aa27.47■■□□□ 1.99
HDAC4-209ENST00000487617 SGIP1Q9BQI5 828 aa27.46■■□□□ 1.99
HDAC4-209ENST00000487617 C5P01031 1676 aa27.46■■□□□ 1.99
HDAC4-209ENST00000487617 ATP6V1AP38606 617 aa27.45■■□□□ 1.98
HDAC4-209ENST00000487617 MTHFSDQ2M296 383 aaKnown RBP27.45■■□□□ 1.98
HDAC4-209ENST00000487617 AK7Q96M32 723 aa27.45■■□□□ 1.98
HDAC4-209ENST00000487617 QSER1Q2KHR3 1735 aa27.44■■□□□ 1.98
HDAC4-209ENST00000487617 COL23A1Q86Y22 540 aaPredicted RBP27.44■■□□□ 1.98
HDAC4-209ENST00000487617 ITPK1Q13572 414 aa27.43■■□□□ 1.98
HDAC4-209ENST00000487617 NFATC2IPQ8NCF5 419 aa27.43■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms