RNA–Protein interactions for RNA: ENST00000486530.1

HPS3-206, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 5

Gene HPS3, Length 1,894 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-206ENST00000486530 XIRP1Q702N8 1843 aaKnown RBP25.92■■□□□ 1.74
HPS3-206ENST00000486530 CRB1P82279 1406 aa25.92■■□□□ 1.74
HPS3-206ENST00000486530 CHL1O00533 1208 aa25.91■■□□□ 1.74
HPS3-206ENST00000486530 HAP1P54257 671 aaPredicted RBP25.91■■□□□ 1.74
HPS3-206ENST00000486530 C8orf58Q8NAV2 365 aa25.91■■□□□ 1.74
HPS3-206ENST00000486530 TRPM3Q9HCF6 1732 aaPredicted RBP25.91■■□□□ 1.74
HPS3-206ENST00000486530 LRRC37A3O60309 1634 aa25.91■■□□□ 1.74
HPS3-206ENST00000486530 MTHFSDQ2M296 383 aaKnown RBP25.91■■□□□ 1.74
HPS3-206ENST00000486530 FAM161AQ3B820 660 aa25.91■■□□□ 1.74
HPS3-206ENST00000486530 MCM10Q7L590 875 aa25.91■■□□□ 1.74
HPS3-206ENST00000486530 KIAA0232Q92628 1395 aa25.9■■□□□ 1.74
HPS3-206ENST00000486530 KCNH5Q8NCM2 988 aa25.9■■□□□ 1.74
HPS3-206ENST00000486530 ELL2O00472 640 aaPredicted RBP25.88■■□□□ 1.73
HPS3-206ENST00000486530 RTF1Q92541 710 aaKnown RBP25.88■■□□□ 1.73
HPS3-206ENST00000486530 SLIT3O75094 1523 aa25.88■■□□□ 1.73
HPS3-206ENST00000486530 HTATSF1O43719 755 aaKnown RBP25.87■■□□□ 1.73
HPS3-206ENST00000486530 IP6K1Q92551 441 aa25.87■■□□□ 1.73
HPS3-206ENST00000486530 IPO9Q96P70 1041 aaKnown RBP25.87■■□□□ 1.73
HPS3-206ENST00000486530 GCP02774 474 aa25.86■■□□□ 1.73
HPS3-206ENST00000486530 HDAC1Q13547 482 aaPredicted RBP25.86■■□□□ 1.73
HPS3-206ENST00000486530 CHMP4BQ9H444 224 aaKnown RBP25.86■■□□□ 1.73
HPS3-206ENST00000486530 ZBTB40Q9NUA8 1239 aa25.86■■□□□ 1.73
HPS3-206ENST00000486530 DDX17Q92841 729 aaKnown RBP25.85■■□□□ 1.73
HPS3-206ENST00000486530 ANP32EQ9BTT0 268 aa25.85■■□□□ 1.73
HPS3-206ENST00000486530 USP19O94966 1318 aa25.85■■□□□ 1.73
HPS3-206ENST00000486530 C8orf34Q49A92 452 aa25.85■■□□□ 1.73
HPS3-206ENST00000486530 LMOD2Q6P5Q4 547 aa25.84■■□□□ 1.73
HPS3-206ENST00000486530 ERICH6Q7L0X2 663 aa25.84■■□□□ 1.73
HPS3-206ENST00000486530 ABCC4O15439 1325 aa25.84■■□□□ 1.73
HPS3-206ENST00000486530 API5Q9BZZ5 524 aaKnown RBP25.83■■□□□ 1.73
HPS3-206ENST00000486530 ARHGEF25Q86VW2 580 aa25.82■■□□□ 1.72
HPS3-206ENST00000486530 NPHP3Q7Z494 1330 aa25.81■■□□□ 1.72
HPS3-206ENST00000486530 AEBP2Q6ZN18 517 aaPredicted RBP25.81■■□□□ 1.72
HPS3-206ENST00000486530 LTV1Q96GA3 475 aaPredicted RBP25.81■■□□□ 1.72
HPS3-206ENST00000486530 NPM2Q86SE8 214 aaKnown RBP25.81■■□□□ 1.72
HPS3-206ENST00000486530 PDZRN3Q9UPQ7 1066 aa25.81■■□□□ 1.72
HPS3-206ENST00000486530 ALS2Q96Q42 1657 aa25.8■■□□□ 1.72
HPS3-206ENST00000486530 MAP3K5Q99683 1374 aa25.8■■□□□ 1.72
HPS3-206ENST00000486530 GNAT3A8MTJ3 354 aa25.79■■□□□ 1.72
HPS3-206ENST00000486530 NOP58Q9Y2X3 529 aaKnown RBP25.79■■□□□ 1.72
HPS3-206ENST00000486530 RGPD2P0DJD1 1756 aa25.79■■□□□ 1.72
HPS3-206ENST00000486530 BRINP3Q76B58 766 aa25.79■■□□□ 1.72
HPS3-206ENST00000486530 SLAIN2Q9P270 581 aa25.77■■□□□ 1.72
HPS3-206ENST00000486530 TSPYL4Q9UJ04 414 aa25.77■■□□□ 1.72
HPS3-206ENST00000486530 ZBTB7BO15156 539 aaPredicted RBP25.76■■□□□ 1.71
HPS3-206ENST00000486530 PLEKHG5O94827 1062 aa25.76■■□□□ 1.71
HPS3-206ENST00000486530 KRT24Q2M2I5 525 aa25.76■■□□□ 1.71
HPS3-206ENST00000486530 PXDNQ92626 1479 aa25.76■■□□□ 1.71
HPS3-206ENST00000486530 ZBTB7CA1YPR0 619 aa25.74■■□□□ 1.71
HPS3-206ENST00000486530 SMC5Q8IY18 1101 aa25.74■■□□□ 1.71
HPS3-206ENST00000486530 CAMTA1Q9Y6Y1 1673 aa25.74■■□□□ 1.71
HPS3-206ENST00000486530 MED1Q15648 1581 aaPredicted RBP25.74■■□□□ 1.71
HPS3-206ENST00000486530 PTPRCP08575 1304 aa25.73■■□□□ 1.71
HPS3-206ENST00000486530 SPATA31A3Q5VYP0 1347 aa25.73■■□□□ 1.71
HPS3-206ENST00000486530 USHBP1Q8N6Y0 703 aa25.72■■□□□ 1.71
HPS3-206ENST00000486530 BABAM1Q9NWV8 329 aa25.72■■□□□ 1.71
HPS3-206ENST00000486530 NCAPD2Q15021 1401 aa25.72■■□□□ 1.71
HPS3-206ENST00000486530 LMO7Q8WWI1 1683 aa25.72■■□□□ 1.71
HPS3-206ENST00000486530 RGS12O14924 1447 aa25.72■■□□□ 1.71
HPS3-206ENST00000486530 TNS3Q68CZ2 1445 aa25.72■■□□□ 1.71
HPS3-206ENST00000486530 NBPF6Q5VWK0 638 aa25.72■■□□□ 1.71
HPS3-206ENST00000486530 NBPF4Q96M43 638 aa25.72■■□□□ 1.71
HPS3-206ENST00000486530 ZBTB47Q9UFB7 747 aaPredicted RBP25.72■■□□□ 1.71
HPS3-206ENST00000486530 FAM208AQ9UK61 1670 aaKnown RBP25.72■■□□□ 1.71
HPS3-206ENST00000486530 MIS18AQ9NYP9 233 aa25.7■■□□□ 1.71
HPS3-206ENST00000486530 CACNA1FO60840 1977 aa25.7■■□□□ 1.71
HPS3-206ENST00000486530 AXIN2Q9Y2T1 843 aa25.69■■□□□ 1.7
HPS3-206ENST00000486530 SOS1Q07889 1333 aaPredicted RBP25.69■■□□□ 1.7
HPS3-206ENST00000486530 INTS3Q68E01 1043 aaKnown RBP25.68■■□□□ 1.7
HPS3-206ENST00000486530 DDRGK1Q96HY6 314 aa25.68■■□□□ 1.7
HPS3-206ENST00000486530 IL17REQ8NFR9 667 aa25.68■■□□□ 1.7
HPS3-206ENST00000486530 ZC3H6P61129 1189 aaKnown RBP25.67■■□□□ 1.7
HPS3-206ENST00000486530 SOS2Q07890 1332 aaPredicted RBP25.66■■□□□ 1.7
HPS3-206ENST00000486530 RGPD5Q99666 1765 aa25.66■■□□□ 1.7
HPS3-206ENST00000486530 CEMIPQ8WUJ3 1361 aa25.66■■□□□ 1.7
HPS3-206ENST00000486530 LRRC59Q96AG4 307 aaKnown RBP25.66■■□□□ 1.7
HPS3-206ENST00000486530 TAF7Q15545 349 aaPredicted RBP25.65■■□□□ 1.7
HPS3-206ENST00000486530 CABLES1Q8TDN4 633 aa25.65■■□□□ 1.7
HPS3-206ENST00000486530 ANKRD24Q8TF21 1146 aa25.65■■□□□ 1.7
HPS3-206ENST00000486530 KDM3BQ7LBC6 1761 aa25.64■■□□□ 1.69
HPS3-206ENST00000486530 SLC4A2P04920 1241 aa25.64■■□□□ 1.69
HPS3-206ENST00000486530 GCC1Q96CN9 775 aa25.63■■□□□ 1.69
HPS3-206ENST00000486530 NUCB1Q02818 461 aa25.62■■□□□ 1.69
HPS3-206ENST00000486530 C1orf115Q9H7X2 142 aa25.62■■□□□ 1.69
HPS3-206ENST00000486530 AMOTQ4VCS5 1084 aa25.61■■□□□ 1.69
HPS3-206ENST00000486530 PLEKHO1Q53GL0 409 aaPredicted RBP25.61■■□□□ 1.69
HPS3-206ENST00000486530 STK31Q9BXU1 1019 aa25.61■■□□□ 1.69
HPS3-206ENST00000486530 AKAP4Q5JQC9 854 aa25.6■■□□□ 1.69
HPS3-206ENST00000486530 CCDC30Q5VVM6 783 aa25.6■■□□□ 1.69
HPS3-206ENST00000486530 N4BP2Q86UW6 1770 aaPredicted RBP25.59■■□□□ 1.69
HPS3-206ENST00000486530 OVOS2A0A0G2JMS6 1433 aa25.59■■□□□ 1.69
HPS3-206ENST00000486530 ABCC6O95255 1503 aa25.59■■□□□ 1.69
HPS3-206ENST00000486530 CRYBG1Q9Y4K1 1723 aa25.59■■□□□ 1.69
HPS3-206ENST00000486530 ERBB3P21860 1342 aa25.57■■□□□ 1.68
HPS3-206ENST00000486530 COL18A1P39060 1754 aa25.57■■□□□ 1.68
HPS3-206ENST00000486530 ZNF530Q6P9A1 599 aaPredicted RBP25.57■■□□□ 1.68
HPS3-206ENST00000486530 CHD1LQ86WJ1 897 aa25.57■■□□□ 1.68
HPS3-206ENST00000486530 SIRT2Q8IXJ6 389 aa25.57■■□□□ 1.68
HPS3-206ENST00000486530 CPDO75976 1380 aa25.56■■□□□ 1.68
HPS3-206ENST00000486530 ATP10DQ9P241 1426 aa25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms