RNA–Protein interactions for RNA: ENST00000485746.1

PTCD1-205, Transcript of pentatricopeptide repeat domain 1, humanhuman

TSL 3

Gene PTCD1, Length 721 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-205ENST00000485746 WNK3Q9BYP7 1800 aa16.95■□□□□ 0.3
PTCD1-205ENST00000485746 PLSCR1O15162 318 aa16.94■□□□□ 0.3
PTCD1-205ENST00000485746 MTHFSP49914 203 aa16.94■□□□□ 0.3
PTCD1-205ENST00000485746 MEGF6O75095 1541 aa16.94■□□□□ 0.3
PTCD1-205ENST00000485746 PSDA5PKW4 1024 aaPredicted RBP16.93■□□□□ 0.3
PTCD1-205ENST00000485746 PCDH11XQ9BZA7 1347 aa16.93■□□□□ 0.3
PTCD1-205ENST00000485746 PCDH11YQ9BZA8 1340 aa16.93■□□□□ 0.3
PTCD1-205ENST00000485746 ANKRD26Q9UPS8 1709 aa16.93■□□□□ 0.3
PTCD1-205ENST00000485746 PRIM1P49642 420 aaKnown RBP16.92■□□□□ 0.3
PTCD1-205ENST00000485746 R3HDM1Q15032 1099 aaKnown RBP16.92■□□□□ 0.3
PTCD1-205ENST00000485746 MAP2P11137 1827 aaKnown RBP16.91■□□□□ 0.3
PTCD1-205ENST00000485746 NPC1L1Q9UHC9 1359 aa16.9■□□□□ 0.3
PTCD1-205ENST00000485746 TNS1Q9HBL0 1735 aaKnown RBP16.9■□□□□ 0.3
PTCD1-205ENST00000485746 RGPD2P0DJD1 1756 aa16.89■□□□□ 0.3
PTCD1-205ENST00000485746 TXNRD1Q16881 649 aa16.89■□□□□ 0.29
PTCD1-205ENST00000485746 DIAPH1O60610 1272 aaKnown RBP16.88■□□□□ 0.29
PTCD1-205ENST00000485746 IL13P35225 146 aa16.88■□□□□ 0.29
PTCD1-205ENST00000485746 PLEKHO1Q53GL0 409 aaPredicted RBP16.88■□□□□ 0.29
PTCD1-205ENST00000485746 SULT6B1Q6IMI4 303 aa16.88■□□□□ 0.29
PTCD1-205ENST00000485746 IGSF1Q8N6C5 1336 aa16.88■□□□□ 0.29
PTCD1-205ENST00000485746 CYP27B1O15528 508 aa16.87■□□□□ 0.29
PTCD1-205ENST00000485746 CFAP53Q96M91 514 aa16.87■□□□□ 0.29
PTCD1-205ENST00000485746 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.87■□□□□ 0.29
PTCD1-205ENST00000485746 IFNL2Q8IZJ0 200 aa16.86■□□□□ 0.29
PTCD1-205ENST00000485746 AMOTQ4VCS5 1084 aa16.85■□□□□ 0.29
PTCD1-205ENST00000485746 MPRIPQ6WCQ1 1025 aa16.85■□□□□ 0.29
PTCD1-205ENST00000485746 AEBP1Q8IUX7 1158 aa16.85■□□□□ 0.29
PTCD1-205ENST00000485746 PROM2Q8N271 834 aa16.85■□□□□ 0.29
PTCD1-205ENST00000485746 STK32BQ9NY57 414 aa16.85■□□□□ 0.29
PTCD1-205ENST00000485746 U2SURPO15042 1029 aaKnown RBP16.84■□□□□ 0.29
PTCD1-205ENST00000485746 DDX10Q13206 875 aaKnown RBP16.84■□□□□ 0.29
PTCD1-205ENST00000485746 NCAPD2Q15021 1401 aa16.84■□□□□ 0.29
PTCD1-205ENST00000485746 HMOX1P09601 288 aa16.83■□□□□ 0.28
PTCD1-205ENST00000485746 PHKG2P15735 406 aa16.83■□□□□ 0.28
PTCD1-205ENST00000485746 C1orf141Q5JVX7 400 aa16.83■□□□□ 0.28
PTCD1-205ENST00000485746 ZNF530Q6P9A1 599 aaPredicted RBP16.83■□□□□ 0.28
PTCD1-205ENST00000485746 SBF2Q86WG5 1849 aa16.82■□□□□ 0.28
PTCD1-205ENST00000485746 HSP90AB1P08238 724 aaKnown RBP16.82■□□□□ 0.28
PTCD1-205ENST00000485746 PPP2R1AP30153 589 aa16.81■□□□□ 0.28
PTCD1-205ENST00000485746 NKX1-1Q15270 411 aaPredicted RBP16.81■□□□□ 0.28
PTCD1-205ENST00000485746 NUDCQ9Y266 331 aa16.81■□□□□ 0.28
PTCD1-205ENST00000485746 NHSQ6T4R5 1651 aa16.81■□□□□ 0.28
PTCD1-205ENST00000485746 SLC27A3Q5K4L6 730 aa16.8■□□□□ 0.28
PTCD1-205ENST00000485746 TMOD3Q9NYL9 352 aa16.8■□□□□ 0.28
PTCD1-205ENST00000485746 SMARCC1Q92922 1105 aaPredicted RBP16.79■□□□□ 0.28
PTCD1-205ENST00000485746 ANO8Q9HCE9 1232 aaPredicted RBP16.79■□□□□ 0.28
PTCD1-205ENST00000485746 CCNL1Q9UK58 526 aaPredicted RBP16.79■□□□□ 0.28
PTCD1-205ENST00000485746 KAT6BQ8WYB5 2073 aa16.78■□□□□ 0.28
PTCD1-205ENST00000485746 KCNQ4P56696 695 aa16.78■□□□□ 0.28
PTCD1-205ENST00000485746 SLC15A2Q16348 729 aa16.78■□□□□ 0.28
PTCD1-205ENST00000485746 DCAF5Q96JK2 942 aa16.78■□□□□ 0.28
PTCD1-205ENST00000485746 PLEKHG2Q9H7P9 1386 aa16.77■□□□□ 0.28
PTCD1-205ENST00000485746 CABP4P57796 275 aa16.77■□□□□ 0.28
PTCD1-205ENST00000485746 PIGBQ92521 554 aa16.77■□□□□ 0.28
PTCD1-205ENST00000485746 LRRC4BQ9NT99 713 aa16.77■□□□□ 0.28
PTCD1-205ENST00000485746 RREB1Q92766 1687 aa16.76■□□□□ 0.27
PTCD1-205ENST00000485746 HMGB2P26583 209 aaKnown RBP16.76■□□□□ 0.27
PTCD1-205ENST00000485746 ERVV-2B6SEH9 535 aa16.75■□□□□ 0.27
PTCD1-205ENST00000485746 SHANK3Q9BYB0 1731 aa16.75■□□□□ 0.27
PTCD1-205ENST00000485746 KDRP35968 1356 aa16.75■□□□□ 0.27
PTCD1-205ENST00000485746 NUP188Q5SRE5 1749 aa16.74■□□□□ 0.27
PTCD1-205ENST00000485746 DOT1LQ8TEK3 1739 aa16.74■□□□□ 0.27
PTCD1-205ENST00000485746 U2AF1L5P0DN76 240 aaPredicted RBP16.74■□□□□ 0.27
PTCD1-205ENST00000485746 U2AF1Q01081 240 aaKnown RBP eCLIP16.74■□□□□ 0.27
PTCD1-205ENST00000485746 AKAP4Q5JQC9 854 aa16.74■□□□□ 0.27
PTCD1-205ENST00000485746 TFCP2L1Q9NZI6 479 aa16.74■□□□□ 0.27
PTCD1-205ENST00000485746 BTAF1O14981 1849 aa16.74■□□□□ 0.27
PTCD1-205ENST00000485746 PALLDQ8WX93 1383 aa16.74■□□□□ 0.27
PTCD1-205ENST00000485746 PKD1L3Q7Z443 1732 aa16.73■□□□□ 0.27
PTCD1-205ENST00000485746 RALBP1Q15311 655 aa16.73■□□□□ 0.27
PTCD1-205ENST00000485746 SPON1Q9HCB6 807 aa16.73■□□□□ 0.27
PTCD1-205ENST00000485746 RGPD3A6NKT7 1758 aaPredicted RBP16.73■□□□□ 0.27
PTCD1-205ENST00000485746 RGPD4Q7Z3J3 1758 aa16.73■□□□□ 0.27
PTCD1-205ENST00000485746 ZNF827Q17R98 1081 aa16.72■□□□□ 0.27
PTCD1-205ENST00000485746 PPP1R1BQ9UD71 204 aaPredicted RBP16.72■□□□□ 0.27
PTCD1-205ENST00000485746 MSH5O43196 834 aa16.71■□□□□ 0.27
PTCD1-205ENST00000485746 ZBTB7AO95365 584 aa16.71■□□□□ 0.27
PTCD1-205ENST00000485746 MTHFSDQ2M296 383 aaKnown RBP16.71■□□□□ 0.27
PTCD1-205ENST00000485746 RBM42Q9BTD8 480 aaKnown RBP16.71■□□□□ 0.27
PTCD1-205ENST00000485746 ASAP1Q9ULH1 1129 aa16.71■□□□□ 0.27
PTCD1-205ENST00000485746 NEFMP07197 916 aa16.7■□□□□ 0.26
PTCD1-205ENST00000485746 GAS2L2Q8NHY3 880 aa16.7■□□□□ 0.26
PTCD1-205ENST00000485746 ATF5Q9Y2D1 282 aaPredicted RBP16.7■□□□□ 0.26
PTCD1-205ENST00000485746 COL3A1P02461 1466 aaPredicted RBP16.69■□□□□ 0.26
PTCD1-205ENST00000485746 LOC102724428A0A0B4J2F2 783 aa16.69■□□□□ 0.26
PTCD1-205ENST00000485746 PRKAR2BP31323 418 aa16.69■□□□□ 0.26
PTCD1-205ENST00000485746 ATP6V1AP38606 617 aa16.69■□□□□ 0.26
PTCD1-205ENST00000485746 SIK1P57059 783 aa16.69■□□□□ 0.26
PTCD1-205ENST00000485746 NFATC2IPQ8NCF5 419 aa16.69■□□□□ 0.26
PTCD1-205ENST00000485746 AKT1S1Q96B36 256 aa16.69■□□□□ 0.26
PTCD1-205ENST00000485746 ATG3Q9NT62 314 aa16.69■□□□□ 0.26
PTCD1-205ENST00000485746 RNMTO43148 476 aaKnown RBP16.68■□□□□ 0.26
PTCD1-205ENST00000485746 AK7Q96M32 723 aa16.68■□□□□ 0.26
PTCD1-205ENST00000485746 PDGFDQ9GZP0 370 aaPredicted RBP16.68■□□□□ 0.26
PTCD1-205ENST00000485746 LGR6Q9HBX8 967 aa16.68■□□□□ 0.26
PTCD1-205ENST00000485746 FCHSD2O94868 740 aa16.67■□□□□ 0.26
PTCD1-205ENST00000485746 RSPH6AQ9H0K4 717 aa16.67■□□□□ 0.26
PTCD1-205ENST00000485746 ZNF316A6NFI3 1004 aaPredicted RBP16.66■□□□□ 0.26
PTCD1-205ENST00000485746 GNAT3A8MTJ3 354 aa16.66■□□□□ 0.26
PTCD1-205ENST00000485746 KDM6AO15550 1401 aaPredicted RBP16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms