RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 PNPLA7Q6ZV29 1317 aa18.31■□□□□ 0.52
HDAC6-227ENST00000485102 NSD2O96028 1365 aa18.3■□□□□ 0.52
HDAC6-227ENST00000485102 LY75O60449 1722 aa18.3■□□□□ 0.52
HDAC6-227ENST00000485102 FYB1O15117 783 aa18.3■□□□□ 0.52
HDAC6-227ENST00000485102 FBLN1P23142 703 aa18.29■□□□□ 0.52
HDAC6-227ENST00000485102 POLD1P28340 1107 aa18.29■□□□□ 0.52
HDAC6-227ENST00000485102 HMGB2P26583 209 aaKnown RBP18.28■□□□□ 0.52
HDAC6-227ENST00000485102 TFCP2L1Q9NZI6 479 aa18.28■□□□□ 0.52
HDAC6-227ENST00000485102 SHANK3Q9BYB0 1731 aa18.28■□□□□ 0.52
HDAC6-227ENST00000485102 MEGF6O75095 1541 aa18.28■□□□□ 0.52
HDAC6-227ENST00000485102 NBPF6Q5VWK0 638 aa18.27■□□□□ 0.52
HDAC6-227ENST00000485102 SYTL4Q96C24 671 aaPredicted RBP18.27■□□□□ 0.52
HDAC6-227ENST00000485102 NBPF4Q96M43 638 aa18.27■□□□□ 0.52
HDAC6-227ENST00000485102 KIF24Q5T7B8 1368 aa18.27■□□□□ 0.51
HDAC6-227ENST00000485102 RGPD2P0DJD1 1756 aa18.27■□□□□ 0.51
HDAC6-227ENST00000485102 DOT1LQ8TEK3 1739 aa18.26■□□□□ 0.51
HDAC6-227ENST00000485102 GOLGB1Q14789 3259 aaKnown RBP18.25■□□□□ 0.51
HDAC6-227ENST00000485102 TMF1P82094 1093 aa18.25■□□□□ 0.51
HDAC6-227ENST00000485102 RRS1Q15050 365 aaKnown RBP18.25■□□□□ 0.51
HDAC6-227ENST00000485102 TUBGCP6Q96RT7 1819 aa18.25■□□□□ 0.51
HDAC6-227ENST00000485102 KCNQ4P56696 695 aa18.24■□□□□ 0.51
HDAC6-227ENST00000485102 GPR162Q16538 588 aa18.24■□□□□ 0.51
HDAC6-227ENST00000485102 RAPGEF4Q8WZA2 1011 aa18.24■□□□□ 0.51
HDAC6-227ENST00000485102 CCNL1Q9UK58 526 aaPredicted RBP18.24■□□□□ 0.51
HDAC6-227ENST00000485102 INSRP06213 1382 aa18.24■□□□□ 0.51
HDAC6-227ENST00000485102 USP47Q96K76 1375 aa18.23■□□□□ 0.51
HDAC6-227ENST00000485102 GGNBP2Q9H3C7 697 aa18.23■□□□□ 0.51
HDAC6-227ENST00000485102 SMG6Q86US8 1419 aaKnown RBP18.23■□□□□ 0.51
HDAC6-227ENST00000485102 CDCA8Q53HL2 280 aa18.22■□□□□ 0.51
HDAC6-227ENST00000485102 TATP17735 454 aaPredicted RBP18.21■□□□□ 0.51
HDAC6-227ENST00000485102 FLT4P35916 1363 aa18.2■□□□□ 0.5
HDAC6-227ENST00000485102 C1QTNF8P60827 252 aa18.2■□□□□ 0.5
HDAC6-227ENST00000485102 HSP90AB2PQ58FF8 381 aa18.2■□□□□ 0.5
HDAC6-227ENST00000485102 COL23A1Q86Y22 540 aaPredicted RBP18.2■□□□□ 0.5
HDAC6-227ENST00000485102 PCDH11XQ9BZA7 1347 aa18.2■□□□□ 0.5
HDAC6-227ENST00000485102 PCDH11YQ9BZA8 1340 aa18.2■□□□□ 0.5
HDAC6-227ENST00000485102 FLAD1Q8NFF5 587 aa18.19■□□□□ 0.5
HDAC6-227ENST00000485102 GRIN3BO60391 1043 aa18.18■□□□□ 0.5
HDAC6-227ENST00000485102 USHBP1Q8N6Y0 703 aa18.18■□□□□ 0.5
HDAC6-227ENST00000485102 NLGN2Q8NFZ4 835 aa18.17■□□□□ 0.5
HDAC6-227ENST00000485102 NCAPD2Q15021 1401 aa18.16■□□□□ 0.5
HDAC6-227ENST00000485102 CYP27B1O15528 508 aa18.16■□□□□ 0.5
HDAC6-227ENST00000485102 CARD14Q9BXL6 1004 aa18.16■□□□□ 0.5
HDAC6-227ENST00000485102 NKX1-1Q15270 411 aaPredicted RBP18.15■□□□□ 0.5
HDAC6-227ENST00000485102 KLHL34Q8N239 644 aa18.15■□□□□ 0.5
HDAC6-227ENST00000485102 SMARCC1Q92922 1105 aaPredicted RBP18.15■□□□□ 0.5
HDAC6-227ENST00000485102 CD2APQ9Y5K6 639 aa18.15■□□□□ 0.5
HDAC6-227ENST00000485102 PALLDQ8WX93 1383 aa18.15■□□□□ 0.5
HDAC6-227ENST00000485102 TAF1LQ8IZX4 1826 aa18.14■□□□□ 0.5
HDAC6-227ENST00000485102 KIF20BQ96Q89 1820 aa18.14■□□□□ 0.5
HDAC6-227ENST00000485102 C5P01031 1676 aa18.14■□□□□ 0.49
HDAC6-227ENST00000485102 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.13■□□□□ 0.493e-15■□□□□ 8.1
HDAC6-227ENST00000485102 MSH5O43196 834 aa18.12■□□□□ 0.49
HDAC6-227ENST00000485102 YBX3P16989 372 aaKnown RBP eCLIP18.12■□□□□ 0.49
HDAC6-227ENST00000485102 MPRIPQ6WCQ1 1025 aa18.12■□□□□ 0.49
HDAC6-227ENST00000485102 TIMELESSQ9UNS1 1208 aa18.12■□□□□ 0.49
HDAC6-227ENST00000485102 WASHC2AQ641Q2 1341 aa18.12■□□□□ 0.49
HDAC6-227ENST00000485102 PELP1Q8IZL8 1130 aaKnown RBP18.11■□□□□ 0.49
HDAC6-227ENST00000485102 EMILIN1Q9Y6C2 1016 aa18.11■□□□□ 0.49
HDAC6-227ENST00000485102 PKD1L3Q7Z443 1732 aa18.11■□□□□ 0.49
HDAC6-227ENST00000485102 ITGB4P16144 1822 aa18.11■□□□□ 0.49
HDAC6-227ENST00000485102 GIGYF1O75420 1035 aaPredicted RBP18.1■□□□□ 0.49
HDAC6-227ENST00000485102 PIGBQ92521 554 aa18.1■□□□□ 0.49
HDAC6-227ENST00000485102 SENP3-EIF4A1A0A087X0R7 540 aa18.09■□□□□ 0.49
HDAC6-227ENST00000485102 SPG7Q9UQ90 795 aa18.09■□□□□ 0.49
HDAC6-227ENST00000485102 ANKRD26Q9UPS8 1709 aa18.09■□□□□ 0.49
HDAC6-227ENST00000485102 TOGARAM1Q9Y4F4 1720 aa18.09■□□□□ 0.49
HDAC6-227ENST00000485102 NSD3Q9BZ95 1437 aa18.08■□□□□ 0.49
HDAC6-227ENST00000485102 PLEKHG2Q9H7P9 1386 aa18.08■□□□□ 0.49
HDAC6-227ENST00000485102 MSL1Q68DK7 614 aa18.08■□□□□ 0.48
HDAC6-227ENST00000485102 C4BP0C0L5 1744 aa18.08■□□□□ 0.48
HDAC6-227ENST00000485102 MAP2P11137 1827 aaKnown RBP18.07■□□□□ 0.48
HDAC6-227ENST00000485102 EYA1Q99502 592 aa18.07■□□□□ 0.48
HDAC6-227ENST00000485102 UBR3Q6ZT12 1888 aa18.06■□□□□ 0.48
HDAC6-227ENST00000485102 SSFA2P28290 1259 aa18.06■□□□□ 0.48
HDAC6-227ENST00000485102 TRIM26Q12899 539 aaPredicted RBP18.06■□□□□ 0.48
HDAC6-227ENST00000485102 AK7Q96M32 723 aa18.06■□□□□ 0.48
HDAC6-227ENST00000485102 LOC102724428A0A0B4J2F2 783 aa18.05■□□□□ 0.48
HDAC6-227ENST00000485102 SIK1P57059 783 aa18.05■□□□□ 0.48
HDAC6-227ENST00000485102 AMIGO3Q86WK7 504 aa18.05■□□□□ 0.48
HDAC6-227ENST00000485102 POLKQ9UBT6 870 aa18.05■□□□□ 0.48
HDAC6-227ENST00000485102 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.04■□□□□ 0.48
HDAC6-227ENST00000485102 IFNL2Q8IZJ0 200 aa18.04■□□□□ 0.48
HDAC6-227ENST00000485102 PPM1GO15355 546 aaPredicted RBP18.02■□□□□ 0.48
HDAC6-227ENST00000485102 PHKG2P15735 406 aa18.02■□□□□ 0.48
HDAC6-227ENST00000485102 TMOD3Q9NYL9 352 aa18.02■□□□□ 0.48
HDAC6-227ENST00000485102 LINC00116Q8NCU8 138 aa18.01■□□□□ 0.47
HDAC6-227ENST00000485102 ASAP1Q9ULH1 1129 aa18.01■□□□□ 0.47
HDAC6-227ENST00000485102 ADCY9O60503 1353 aa18.01■□□□□ 0.47
HDAC6-227ENST00000485102 CLSPNQ9HAW4 1339 aa18■□□□□ 0.47
HDAC6-227ENST00000485102 ATP10DQ9P241 1426 aa17.99■□□□□ 0.47
HDAC6-227ENST00000485102 CEP350Q5VT06 3117 aa17.99■□□□□ 0.47
HDAC6-227ENST00000485102 ITPK1Q13572 414 aa17.99■□□□□ 0.47
HDAC6-227ENST00000485102 ATG3Q9NT62 314 aa17.99■□□□□ 0.47
HDAC6-227ENST00000485102 ERVV-2B6SEH9 535 aa17.98■□□□□ 0.47
HDAC6-227ENST00000485102 PHF14O94880 888 aa17.98■□□□□ 0.47
HDAC6-227ENST00000485102 ATP6V1AP38606 617 aa17.98■□□□□ 0.47
HDAC6-227ENST00000485102 EIF4A2Q14240 407 aaKnown RBP17.98■□□□□ 0.47
HDAC6-227ENST00000485102 IGSF1Q8N6C5 1336 aa17.98■□□□□ 0.47
HDAC6-227ENST00000485102 ZNF831Q5JPB2 1677 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms