RNA–Protein interactions for RNA: ENST00000482733.1

HMGN1-214, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 701 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-214ENST00000482733 DDX54Q8TDD1 881 aaKnown RBP22.37■■□□□ 1.17
HMGN1-214ENST00000482733 CFAP53Q96M91 514 aa22.37■■□□□ 1.17
HMGN1-214ENST00000482733 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.36■■□□□ 1.17
HMGN1-214ENST00000482733 PARD3Q8TEW0 1356 aa22.36■■□□□ 1.17
HMGN1-214ENST00000482733 SPG7Q9UQ90 795 aa22.35■■□□□ 1.17
HMGN1-214ENST00000482733 PCDH11XQ9BZA7 1347 aa22.34■■□□□ 1.17
HMGN1-214ENST00000482733 PCDH11YQ9BZA8 1340 aa22.34■■□□□ 1.17
HMGN1-214ENST00000482733 RALBP1Q15311 655 aa22.34■■□□□ 1.17
HMGN1-214ENST00000482733 BCL11BQ9C0K0 894 aaPredicted RBP22.34■■□□□ 1.17
HMGN1-214ENST00000482733 RGPD1P0DJD0 1748 aa22.34■■□□□ 1.17
HMGN1-214ENST00000482733 APBA3O96018 575 aa22.32■■□□□ 1.16
HMGN1-214ENST00000482733 DEFB132Q7Z7B7 95 aa22.32■■□□□ 1.16
HMGN1-214ENST00000482733 KDRP35968 1356 aa22.31■■□□□ 1.16
HMGN1-214ENST00000482733 SULT6B1Q6IMI4 303 aa22.31■■□□□ 1.16
HMGN1-214ENST00000482733 COL3A1P02461 1466 aaPredicted RBP22.3■■□□□ 1.16
HMGN1-214ENST00000482733 AMOTQ4VCS5 1084 aa22.29■■□□□ 1.16
HMGN1-214ENST00000482733 PLEKHO1Q53GL0 409 aaPredicted RBP22.29■■□□□ 1.16
HMGN1-214ENST00000482733 AEBP1Q8IUX7 1158 aa22.29■■□□□ 1.16
HMGN1-214ENST00000482733 EN1Q05925 392 aaPredicted RBP22.28■■□□□ 1.16
HMGN1-214ENST00000482733 NUDCQ9Y266 331 aa22.28■■□□□ 1.16
HMGN1-214ENST00000482733 CYP27B1O15528 508 aa22.27■■□□□ 1.16
HMGN1-214ENST00000482733 ACSBG1Q96GR2 724 aa22.27■■□□□ 1.16
HMGN1-214ENST00000482733 TNS1Q9HBL0 1735 aaKnown RBP22.26■■□□□ 1.15
HMGN1-214ENST00000482733 IFNL2Q8IZJ0 200 aa22.26■■□□□ 1.15
HMGN1-214ENST00000482733 U2SURPO15042 1029 aaKnown RBP22.25■■□□□ 1.15
HMGN1-214ENST00000482733 PLSCR1O15162 318 aa22.25■■□□□ 1.15
HMGN1-214ENST00000482733 KCNQ2O43526 872 aa22.25■■□□□ 1.15
HMGN1-214ENST00000482733 NKX1-1Q15270 411 aaPredicted RBP22.25■■□□□ 1.15
HMGN1-214ENST00000482733 CAMKK2Q96RR4 588 aa22.25■■□□□ 1.15
HMGN1-214ENST00000482733 PKD1L3Q7Z443 1732 aa22.25■■□□□ 1.15
HMGN1-214ENST00000482733 SHANK3Q9BYB0 1731 aa22.24■■□□□ 1.15
HMGN1-214ENST00000482733 HMOX1P09601 288 aa22.24■■□□□ 1.15
HMGN1-214ENST00000482733 PHKG2P15735 406 aa22.23■■□□□ 1.15
HMGN1-214ENST00000482733 PTF1AQ7RTS3 328 aa22.23■■□□□ 1.15
HMGN1-214ENST00000482733 SBF2Q86WG5 1849 aa22.22■■□□□ 1.15
HMGN1-214ENST00000482733 HSP90AB1P08238 724 aaKnown RBP22.22■■□□□ 1.15
HMGN1-214ENST00000482733 PRIM1P49642 420 aaKnown RBP22.22■■□□□ 1.15
HMGN1-214ENST00000482733 EZH2Q15910 746 aaKnown RBP22.22■■□□□ 1.15
HMGN1-214ENST00000482733 NHSQ6T4R5 1651 aa22.22■■□□□ 1.15
HMGN1-214ENST00000482733 MYBBP1AQ9BQG0 1328 aaKnown RBP22.22■■□□□ 1.15
HMGN1-214ENST00000482733 SYTL4Q96C24 671 aaPredicted RBP22.21■■□□□ 1.15
HMGN1-214ENST00000482733 ZNF530Q6P9A1 599 aaPredicted RBP22.2■■□□□ 1.14
HMGN1-214ENST00000482733 C1orf141Q5JVX7 400 aa22.19■■□□□ 1.14
HMGN1-214ENST00000482733 PRKRIP1Q9H875 184 aaPredicted RBP22.19■■□□□ 1.14
HMGN1-214ENST00000482733 U2AF1L5P0DN76 240 aaPredicted RBP22.18■■□□□ 1.14
HMGN1-214ENST00000482733 U2AF1Q01081 240 aaKnown RBP eCLIP22.18■■□□□ 1.141e-6■□□□□ 10.2
HMGN1-214ENST00000482733 DCAF5Q96JK2 942 aa22.17■■□□□ 1.14
HMGN1-214ENST00000482733 FCHSD2O94868 740 aa22.15■■□□□ 1.14
HMGN1-214ENST00000482733 AKAP4Q5JQC9 854 aa22.15■■□□□ 1.14
HMGN1-214ENST00000482733 RGPD3A6NKT7 1758 aaPredicted RBP22.15■■□□□ 1.14
HMGN1-214ENST00000482733 RGPD4Q7Z3J3 1758 aa22.15■■□□□ 1.14
HMGN1-214ENST00000482733 RSPH6AQ9H0K4 717 aa22.14■■□□□ 1.13
HMGN1-214ENST00000482733 DOT1LQ8TEK3 1739 aa22.14■■□□□ 1.13
HMGN1-214ENST00000482733 ERVV-2B6SEH9 535 aa22.13■■□□□ 1.13
HMGN1-214ENST00000482733 TXNRD1Q16881 649 aa22.13■■□□□ 1.13
HMGN1-214ENST00000482733 MPRIPQ6WCQ1 1025 aa22.13■■□□□ 1.13
HMGN1-214ENST00000482733 PRKAR2BP31323 418 aa22.12■■□□□ 1.13
HMGN1-214ENST00000482733 MTHFSDQ2M296 383 aaKnown RBP22.12■■□□□ 1.13
HMGN1-214ENST00000482733 NBPF14Q5TI25 921 aa22.12■■□□□ 1.13
HMGN1-214ENST00000482733 GAS2L2Q8NHY3 880 aa22.12■■□□□ 1.13
HMGN1-214ENST00000482733 TMOD3Q9NYL9 352 aa22.12■■□□□ 1.13
HMGN1-214ENST00000482733 PROM2Q8N271 834 aa22.11■■□□□ 1.13
HMGN1-214ENST00000482733 SLC27A3Q5K4L6 730 aa22.1■■□□□ 1.13
HMGN1-214ENST00000482733 SMARCC1Q92922 1105 aaPredicted RBP22.1■■□□□ 1.13
HMGN1-214ENST00000482733 PNNQ9H307 717 aaKnown RBP22.1■■□□□ 1.13
HMGN1-214ENST00000482733 BTAF1O14981 1849 aa22.1■■□□□ 1.13
HMGN1-214ENST00000482733 PIGBQ92521 554 aa22.09■■□□□ 1.13
HMGN1-214ENST00000482733 RREB1Q92766 1687 aa22.09■■□□□ 1.13
HMGN1-214ENST00000482733 ANP32CO43423 234 aa22.08■■□□□ 1.13
HMGN1-214ENST00000482733 NEFMP07197 916 aa22.08■■□□□ 1.13
HMGN1-214ENST00000482733 HMGB2P26583 209 aaKnown RBP22.08■■□□□ 1.13
HMGN1-214ENST00000482733 KDM6AO15550 1401 aaPredicted RBP22.07■■□□□ 1.12
HMGN1-214ENST00000482733 CABP4P57796 275 aa22.07■■□□□ 1.12
HMGN1-214ENST00000482733 TOGARAM1Q9Y4F4 1720 aa22.06■■□□□ 1.12
HMGN1-214ENST00000482733 PHACTR3Q96KR7 559 aa22.06■■□□□ 1.12
HMGN1-214ENST00000482733 KAT6BQ8WYB5 2073 aa22.06■■□□□ 1.12
HMGN1-214ENST00000482733 PALLDQ8WX93 1383 aa22.04■■□□□ 1.12
HMGN1-214ENST00000482733 MAP3K5Q99683 1374 aa22.04■■□□□ 1.12
HMGN1-214ENST00000482733 GNAT3A8MTJ3 354 aa22.04■■□□□ 1.12
HMGN1-214ENST00000482733 RNMTO43148 476 aaKnown RBP22.04■■□□□ 1.12
HMGN1-214ENST00000482733 NUP188Q5SRE5 1749 aa22.03■■□□□ 1.12
HMGN1-214ENST00000482733 CCNL1Q9UK58 526 aaPredicted RBP22.03■■□□□ 1.12
HMGN1-214ENST00000482733 R3HDM1Q15032 1099 aaKnown RBP22.02■■□□□ 1.12
HMGN1-214ENST00000482733 WDR43Q15061 677 aaKnown RBP eCLIP22.02■■□□□ 1.12
HMGN1-214ENST00000482733 LGR6Q9HBX8 967 aa22.02■■□□□ 1.12
HMGN1-214ENST00000482733 LRRC4BQ9NT99 713 aa22.02■■□□□ 1.12
HMGN1-214ENST00000482733 STK32BQ9NY57 414 aa22.02■■□□□ 1.12
HMGN1-214ENST00000482733 NFATC2IPQ8NCF5 419 aa22.01■■□□□ 1.11
HMGN1-214ENST00000482733 PLEKHF1Q96S99 279 aa22.01■■□□□ 1.11
HMGN1-214ENST00000482733 SLC52A2Q9HAB3 445 aa22.01■■□□□ 1.11
HMGN1-214ENST00000482733 ATG3Q9NT62 314 aa22.01■■□□□ 1.11
HMGN1-214ENST00000482733 PSDA5PKW4 1024 aaPredicted RBP22■■□□□ 1.11
HMGN1-214ENST00000482733 ASAP1Q9ULH1 1129 aa22■■□□□ 1.11
HMGN1-214ENST00000482733 MAPK8IP3Q9UPT6 1336 aa22■■□□□ 1.11
HMGN1-214ENST00000482733 ITGB4P16144 1822 aa21.99■■□□□ 1.11
HMGN1-214ENST00000482733 HTATSF1O43719 755 aaKnown RBP21.99■■□□□ 1.11
HMGN1-214ENST00000482733 ANO8Q9HCE9 1232 aaPredicted RBP21.99■■□□□ 1.11
HMGN1-214ENST00000482733 SLC15A2Q16348 729 aa21.98■■□□□ 1.11
HMGN1-214ENST00000482733 RTF1Q92541 710 aaKnown RBP21.98■■□□□ 1.11
HMGN1-214ENST00000482733 LOC102724428A0A0B4J2F2 783 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms