RNA–Protein interactions for RNA: ENST00000482647.5

SEC13-217, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-217ENST00000482647 PARD3Q8TEW0 1356 aa28.16■■■□□ 2.1
SEC13-217ENST00000482647 RALBP1Q15311 655 aa28.15■■■□□ 2.1
SEC13-217ENST00000482647 BAG6P46379 1132 aa28.14■■■□□ 2.1
SEC13-217ENST00000482647 SULT6B1Q6IMI4 303 aa28.14■■■□□ 2.1
SEC13-217ENST00000482647 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.14■■■□□ 2.1
SEC13-217ENST00000482647 SPG7Q9UQ90 795 aa28.14■■■□□ 2.1
SEC13-217ENST00000482647 DEFB132Q7Z7B7 95 aa28.12■■■□□ 2.09
SEC13-217ENST00000482647 BCL11BQ9C0K0 894 aaPredicted RBP28.12■■■□□ 2.09
SEC13-217ENST00000482647 PCDH11XQ9BZA7 1347 aa28.12■■■□□ 2.09
SEC13-217ENST00000482647 PCDH11YQ9BZA8 1340 aa28.12■■■□□ 2.09
SEC13-217ENST00000482647 APBA3O96018 575 aa28.11■■■□□ 2.09
SEC13-217ENST00000482647 AEBP1Q8IUX7 1158 aa28.11■■■□□ 2.09
SEC13-217ENST00000482647 PLEKHG2Q9H7P9 1386 aa28.1■■■□□ 2.09
SEC13-217ENST00000482647 U2SURPO15042 1029 aaKnown RBP28.07■■■□□ 2.08
SEC13-217ENST00000482647 PLEKHO1Q53GL0 409 aaPredicted RBP28.07■■■□□ 2.08
SEC13-217ENST00000482647 ACSBG1Q96GR2 724 aa28.07■■■□□ 2.08
SEC13-217ENST00000482647 NUDCQ9Y266 331 aa28.07■■■□□ 2.08
SEC13-217ENST00000482647 KDRP35968 1356 aa28.07■■■□□ 2.08
SEC13-217ENST00000482647 CYP27B1O15528 508 aa28.06■■■□□ 2.08
SEC13-217ENST00000482647 EN1Q05925 392 aaPredicted RBP28.06■■■□□ 2.08
SEC13-217ENST00000482647 AMOTQ4VCS5 1084 aa28.06■■■□□ 2.08
SEC13-217ENST00000482647 COL3A1P02461 1466 aaPredicted RBP28.06■■■□□ 2.08
SEC13-217ENST00000482647 KCNQ2O43526 872 aa28.05■■■□□ 2.08
SEC13-217ENST00000482647 HMOX1P09601 288 aa28.05■■■□□ 2.08
SEC13-217ENST00000482647 RGPD1P0DJD0 1748 aa28.05■■■□□ 2.08
SEC13-217ENST00000482647 PTF1AQ7RTS3 328 aa28.04■■■□□ 2.08
SEC13-217ENST00000482647 IFNL2Q8IZJ0 200 aa28.03■■■□□ 2.08
SEC13-217ENST00000482647 PRIM1P49642 420 aaKnown RBP28.01■■■□□ 2.07
SEC13-217ENST00000482647 CAMKK2Q96RR4 588 aa28.01■■■□□ 2.07
SEC13-217ENST00000482647 MYBBP1AQ9BQG0 1328 aaKnown RBP28■■■□□ 2.07
SEC13-217ENST00000482647 PHKG2P15735 406 aa28■■■□□ 2.07
SEC13-217ENST00000482647 NKX1-1Q15270 411 aaPredicted RBP28■■■□□ 2.07
SEC13-217ENST00000482647 SYTL4Q96C24 671 aaPredicted RBP28■■■□□ 2.07
SEC13-217ENST00000482647 PRKRIP1Q9H875 184 aaPredicted RBP28■■■□□ 2.07
SEC13-217ENST00000482647 PLSCR1O15162 318 aa27.99■■■□□ 2.07
SEC13-217ENST00000482647 U2AF1L5P0DN76 240 aaPredicted RBP27.98■■■□□ 2.07
SEC13-217ENST00000482647 U2AF1Q01081 240 aaKnown RBP eCLIP27.98■■■□□ 2.07
SEC13-217ENST00000482647 EZH2Q15910 746 aaKnown RBP27.98■■■□□ 2.07
SEC13-217ENST00000482647 ZNF530Q6P9A1 599 aaPredicted RBP27.97■■■□□ 2.07
SEC13-217ENST00000482647 SHANK3Q9BYB0 1731 aa27.97■■■□□ 2.07
SEC13-217ENST00000482647 TNS1Q9HBL0 1735 aaKnown RBP27.97■■■□□ 2.07
SEC13-217ENST00000482647 PKD1L3Q7Z443 1732 aa27.96■■■□□ 2.07
SEC13-217ENST00000482647 SBF2Q86WG5 1849 aa27.96■■■□□ 2.07
SEC13-217ENST00000482647 HSP90AB1P08238 724 aaKnown RBP27.95■■■□□ 2.06
SEC13-217ENST00000482647 C1orf141Q5JVX7 400 aa27.95■■■□□ 2.06
SEC13-217ENST00000482647 FCHSD2O94868 740 aa27.92■■■□□ 2.06
SEC13-217ENST00000482647 NHSQ6T4R5 1651 aa27.91■■■□□ 2.06
SEC13-217ENST00000482647 DCAF5Q96JK2 942 aa27.91■■■□□ 2.06
SEC13-217ENST00000482647 RSPH6AQ9H0K4 717 aa27.91■■■□□ 2.06
SEC13-217ENST00000482647 MPRIPQ6WCQ1 1025 aa27.9■■■□□ 2.06
SEC13-217ENST00000482647 PRKAR2BP31323 418 aa27.89■■■□□ 2.06
SEC13-217ENST00000482647 MTHFSDQ2M296 383 aaKnown RBP27.89■■■□□ 2.06
SEC13-217ENST00000482647 AKAP4Q5JQC9 854 aa27.89■■■□□ 2.06
SEC13-217ENST00000482647 KAT6BQ8WYB5 2073 aa27.88■■■□□ 2.05
SEC13-217ENST00000482647 ERVV-2B6SEH9 535 aa27.87■■■□□ 2.05
SEC13-217ENST00000482647 ANP32CO43423 234 aa27.86■■■□□ 2.05
SEC13-217ENST00000482647 TXNRD1Q16881 649 aa27.86■■■□□ 2.05
SEC13-217ENST00000482647 PROM2Q8N271 834 aa27.86■■■□□ 2.05
SEC13-217ENST00000482647 GAS2L2Q8NHY3 880 aa27.86■■■□□ 2.05
SEC13-217ENST00000482647 TMOD3Q9NYL9 352 aa27.86■■■□□ 2.05
SEC13-217ENST00000482647 PIGBQ92521 554 aa27.84■■■□□ 2.05
SEC13-217ENST00000482647 PHACTR3Q96KR7 559 aa27.84■■■□□ 2.05
SEC13-217ENST00000482647 DOT1LQ8TEK3 1739 aa27.84■■■□□ 2.05
SEC13-217ENST00000482647 NBPF14Q5TI25 921 aa27.83■■■□□ 2.05
SEC13-217ENST00000482647 PNNQ9H307 717 aaKnown RBP27.83■■■□□ 2.05
SEC13-217ENST00000482647 NEFMP07197 916 aa27.81■■■□□ 2.04
SEC13-217ENST00000482647 CABP4P57796 275 aa27.81■■■□□ 2.04
SEC13-217ENST00000482647 SLC27A3Q5K4L6 730 aa27.8■■■□□ 2.04
SEC13-217ENST00000482647 SMARCC1Q92922 1105 aaPredicted RBP27.8■■■□□ 2.04
SEC13-217ENST00000482647 BTAF1O14981 1849 aa27.8■■■□□ 2.04
SEC13-217ENST00000482647 KDM6AO15550 1401 aaPredicted RBP27.79■■■□□ 2.04
SEC13-217ENST00000482647 RGPD3A6NKT7 1758 aaPredicted RBP27.78■■■□□ 2.04
SEC13-217ENST00000482647 RGPD4Q7Z3J3 1758 aa27.78■■■□□ 2.04
SEC13-217ENST00000482647 GNAT3A8MTJ3 354 aa27.78■■■□□ 2.04
SEC13-217ENST00000482647 WDR43Q15061 677 aaKnown RBP eCLIP27.77■■■□□ 2.04
SEC13-217ENST00000482647 LGR6Q9HBX8 967 aa27.77■■■□□ 2.04
SEC13-217ENST00000482647 RNMTO43148 476 aaKnown RBP27.76■■■□□ 2.03
SEC13-217ENST00000482647 NFATC2IPQ8NCF5 419 aa27.76■■■□□ 2.03
SEC13-217ENST00000482647 TOGARAM1Q9Y4F4 1720 aa27.75■■■□□ 2.03
SEC13-217ENST00000482647 MAP3K5Q99683 1374 aa27.75■■■□□ 2.03
SEC13-217ENST00000482647 PLEKHF1Q96S99 279 aa27.75■■■□□ 2.03
SEC13-217ENST00000482647 PALLDQ8WX93 1383 aa27.74■■■□□ 2.03
SEC13-217ENST00000482647 LRRC4BQ9NT99 713 aa27.74■■■□□ 2.03
SEC13-217ENST00000482647 CCNL1Q9UK58 526 aaPredicted RBP27.74■■■□□ 2.03
SEC13-217ENST00000482647 ASAP1Q9ULH1 1129 aa27.74■■■□□ 2.03
SEC13-217ENST00000482647 RREB1Q92766 1687 aa27.73■■■□□ 2.03
SEC13-217ENST00000482647 R3HDM1Q15032 1099 aaKnown RBP27.73■■■□□ 2.03
SEC13-217ENST00000482647 ATG3Q9NT62 314 aa27.73■■■□□ 2.03
SEC13-217ENST00000482647 MAPK8IP3Q9UPT6 1336 aa27.72■■■□□ 2.03
SEC13-217ENST00000482647 PSDA5PKW4 1024 aaPredicted RBP27.72■■■□□ 2.03
SEC13-217ENST00000482647 HMGB2P26583 209 aaKnown RBP27.72■■■□□ 2.03
SEC13-217ENST00000482647 SLC52A2Q9HAB3 445 aa27.72■■■□□ 2.03
SEC13-217ENST00000482647 STK32BQ9NY57 414 aa27.71■■■□□ 2.03
SEC13-217ENST00000482647 KCNQ4P56696 695 aa27.7■■■□□ 2.02
SEC13-217ENST00000482647 IL17REQ8NFR9 667 aa27.7■■■□□ 2.02
SEC13-217ENST00000482647 RTF1Q92541 710 aaKnown RBP27.7■■■□□ 2.02
SEC13-217ENST00000482647 ADAMTS8Q9UP79 889 aa27.7■■■□□ 2.02
SEC13-217ENST00000482647 ITGB4P16144 1822 aa27.69■■■□□ 2.02
SEC13-217ENST00000482647 NUP188Q5SRE5 1749 aa27.68■■■□□ 2.02
SEC13-217ENST00000482647 HTATSF1O43719 755 aaKnown RBP27.68■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms