RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 CALD1Q05682 793 aaKnown RBP10.87□□□□□ -0.67
SYNE1-225ENST00000481502 NFE2L2Q16236 605 aa10.87□□□□□ -0.67
SYNE1-225ENST00000481502 ZNF772Q68DY9 489 aaPredicted RBP10.87□□□□□ -0.67
SYNE1-225ENST00000481502 LARP1Q6PKG0 1096 aaKnown RBP10.87□□□□□ -0.67
SYNE1-225ENST00000481502 C8orf37Q96NL8 207 aa10.87□□□□□ -0.67
SYNE1-225ENST00000481502 USP21Q9UK80 565 aa10.87□□□□□ -0.67
SYNE1-225ENST00000481502 TRPC5Q9UL62 973 aaPredicted RBP10.87□□□□□ -0.67
SYNE1-225ENST00000481502 SPG7Q9UQ90 795 aa10.87□□□□□ -0.67
SYNE1-225ENST00000481502 SPATA31A1Q5TZJ5 1347 aa10.86□□□□□ -0.67
SYNE1-225ENST00000481502 RGPD5Q99666 1765 aa10.86□□□□□ -0.67
SYNE1-225ENST00000481502 APAF1O14727 1248 aa10.86□□□□□ -0.67
SYNE1-225ENST00000481502 TMPOP42166 694 aaKnown RBP10.86□□□□□ -0.67
SYNE1-225ENST00000481502 STRN4Q9NRL3 753 aa10.86□□□□□ -0.67
SYNE1-225ENST00000481502 PLCH1Q4KWH8 1693 aa10.85□□□□□ -0.67
SYNE1-225ENST00000481502 NRAPQ86VF7 1730 aa10.85□□□□□ -0.67
SYNE1-225ENST00000481502 ONECUT3O60422 494 aaPredicted RBP10.85□□□□□ -0.67
SYNE1-225ENST00000481502 HSP90AB1P08238 724 aaKnown RBP10.85□□□□□ -0.67
SYNE1-225ENST00000481502 HNRNPUQ00839 825 aaKnown RBP eCLIP10.85□□□□□ -0.67
SYNE1-225ENST00000481502 AEBP1Q8IUX7 1158 aa10.85□□□□□ -0.67
SYNE1-225ENST00000481502 WDR63Q8IWG1 891 aa10.85□□□□□ -0.67
SYNE1-225ENST00000481502 IL16Q14005 1332 aa10.84□□□□□ -0.67
SYNE1-225ENST00000481502 OVOS2A0A0G2JMS6 1433 aa10.84□□□□□ -0.67
SYNE1-225ENST00000481502 AKAP4Q5JQC9 854 aa10.84□□□□□ -0.67
SYNE1-225ENST00000481502 PHACTR3Q96KR7 559 aa10.84□□□□□ -0.67
SYNE1-225ENST00000481502 RNF39Q9H2S5 420 aa10.84□□□□□ -0.67
SYNE1-225ENST00000481502 BABAM1Q9NWV8 329 aa10.84□□□□□ -0.67
SYNE1-225ENST00000481502 DISP2A7MBM2 1401 aa10.84□□□□□ -0.67
SYNE1-225ENST00000481502 ATRNO75882 1429 aa10.84□□□□□ -0.67
SYNE1-225ENST00000481502 AFF2P51816 1311 aa10.84□□□□□ -0.67
SYNE1-225ENST00000481502 ZNF521Q96K83 1311 aa10.84□□□□□ -0.67
SYNE1-225ENST00000481502 GNAT3A8MTJ3 354 aa10.83□□□□□ -0.68
SYNE1-225ENST00000481502 RIPK4P57078 832 aa10.83□□□□□ -0.68
SYNE1-225ENST00000481502 MTHFSDQ2M296 383 aaKnown RBP10.83□□□□□ -0.68
SYNE1-225ENST00000481502 WWC1Q8IX03 1113 aa10.83□□□□□ -0.68
SYNE1-225ENST00000481502 IFNL2Q8IZJ0 200 aa10.83□□□□□ -0.68
SYNE1-225ENST00000481502 ZCRB1Q8TBF4 217 aaKnown RBP10.83□□□□□ -0.68
SYNE1-225ENST00000481502 GJD4Q96KN9 370 aaPredicted RBP10.83□□□□□ -0.68
SYNE1-225ENST00000481502 PCDH11XQ9BZA7 1347 aa10.83□□□□□ -0.68
SYNE1-225ENST00000481502 PCDH11YQ9BZA8 1340 aa10.83□□□□□ -0.68
SYNE1-225ENST00000481502 EXOC5O00471 708 aa10.82□□□□□ -0.68
SYNE1-225ENST00000481502 NKX1-1Q15270 411 aaPredicted RBP10.82□□□□□ -0.68
SYNE1-225ENST00000481502 C1orf141Q5JVX7 400 aa10.82□□□□□ -0.68
SYNE1-225ENST00000481502 CCDC146Q8IYE0 955 aa10.82□□□□□ -0.68
SYNE1-225ENST00000481502 RTF1Q92541 710 aaKnown RBP10.82□□□□□ -0.68
SYNE1-225ENST00000481502 USHBP1Q8N6Y0 703 aa10.81□□□□□ -0.68
SYNE1-225ENST00000481502 PARP4Q9UKK3 1724 aaKnown RBP10.81□□□□□ -0.68
SYNE1-225ENST00000481502 MAP3K5Q99683 1374 aa10.8□□□□□ -0.68
SYNE1-225ENST00000481502 RBM6P78332 1123 aaKnown RBP10.8□□□□□ -0.68
SYNE1-225ENST00000481502 GOLGA2Q08379 1002 aa10.8□□□□□ -0.68
SYNE1-225ENST00000481502 ZNF530Q6P9A1 599 aaPredicted RBP10.8□□□□□ -0.68
SYNE1-225ENST00000481502 DCAF5Q96JK2 942 aa10.8□□□□□ -0.68
SYNE1-225ENST00000481502 QTRT2Q9H974 415 aaKnown RBP10.8□□□□□ -0.68
SYNE1-225ENST00000481502 TRIM35Q9UPQ4 493 aa10.8□□□□□ -0.68
SYNE1-225ENST00000481502 MEGF6O75095 1541 aa10.79□□□□□ -0.68
SYNE1-225ENST00000481502 CEMIPQ8WUJ3 1361 aa10.79□□□□□ -0.68
SYNE1-225ENST00000481502 PKD1L3Q7Z443 1732 aa10.79□□□□□ -0.68
SYNE1-225ENST00000481502 E9PSI1 815 aa10.79□□□□□ -0.68
SYNE1-225ENST00000481502 PHKG2P15735 406 aa10.79□□□□□ -0.68
SYNE1-225ENST00000481502 DDB1Q16531 1140 aa10.79□□□□□ -0.68
SYNE1-225ENST00000481502 CCDC9Q9Y3X0 531 aaKnown RBP10.79□□□□□ -0.68
SYNE1-225ENST00000481502 RGPD2P0DJD1 1756 aa10.79□□□□□ -0.68
SYNE1-225ENST00000481502 BCL9O00512 1426 aa10.78□□□□□ -0.68
SYNE1-225ENST00000481502 ERVV-2B6SEH9 535 aa10.78□□□□□ -0.68
SYNE1-225ENST00000481502 GNAI1P63096 354 aa10.78□□□□□ -0.68
SYNE1-225ENST00000481502 TRMT2AQ8IZ69 625 aaKnown RBP10.78□□□□□ -0.68
SYNE1-225ENST00000481502 CFAP44Q96MT7 982 aa10.78□□□□□ -0.68
SYNE1-225ENST00000481502 CHMP4AQ9BY43 222 aa10.78□□□□□ -0.68
SYNE1-225ENST00000481502 MYH16Q9H6N6 1097 aa10.78□□□□□ -0.68
SYNE1-225ENST00000481502 IFT57Q9NWB7 429 aa10.78□□□□□ -0.68
SYNE1-225ENST00000481502 TNS2Q63HR2 1409 aa10.77□□□□□ -0.68
SYNE1-225ENST00000481502 CYP27B1O15528 508 aa10.77□□□□□ -0.69
SYNE1-225ENST00000481502 CT47B1P0C2W7 299 aaPredicted RBP10.77□□□□□ -0.69
SYNE1-225ENST00000481502 NEUROD2Q15784 382 aa10.77□□□□□ -0.69
SYNE1-225ENST00000481502 USP35Q9P2H5 1018 aa10.77□□□□□ -0.69
SYNE1-225ENST00000481502 SOS1Q07889 1333 aaPredicted RBP10.77□□□□□ -0.69
SYNE1-225ENST00000481502 RNMTO43148 476 aaKnown RBP10.76□□□□□ -0.69
SYNE1-225ENST00000481502 CENPBP07199 599 aaPredicted RBP10.76□□□□□ -0.69
SYNE1-225ENST00000481502 ZNF853P0CG23 659 aa10.76□□□□□ -0.69
SYNE1-225ENST00000481502 SLFN5Q08AF3 891 aa10.76□□□□□ -0.69
SYNE1-225ENST00000481502 IL17REQ8NFR9 667 aa10.76□□□□□ -0.69
SYNE1-225ENST00000481502 ADAMTS7Q9UKP4 1686 aa10.76□□□□□ -0.69
SYNE1-225ENST00000481502 CHL1O00533 1208 aa10.75□□□□□ -0.69
SYNE1-225ENST00000481502 TAF7Q15545 349 aaPredicted RBP10.75□□□□□ -0.69
SYNE1-225ENST00000481502 ZNF428Q96B54 188 aa10.75□□□□□ -0.69
SYNE1-225ENST00000481502 RRP7AQ9Y3A4 280 aaKnown RBP10.75□□□□□ -0.69
SYNE1-225ENST00000481502 WNK3Q9BYP7 1800 aa10.74□□□□□ -0.69
SYNE1-225ENST00000481502 THSD7AQ9UPZ6 1657 aa10.74□□□□□ -0.69
SYNE1-225ENST00000481502 HMGB2P26583 209 aaKnown RBP10.74□□□□□ -0.69
SYNE1-225ENST00000481502 RXRBP28702 533 aa10.74□□□□□ -0.69
SYNE1-225ENST00000481502 TEFQ10587 303 aa10.74□□□□□ -0.69
SYNE1-225ENST00000481502 FAM98CQ17RN3 349 aaKnown RBP10.74□□□□□ -0.69
SYNE1-225ENST00000481502 ILDR1Q86SU0 546 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-225ENST00000481502 YTHDC1Q96MU7 727 aaKnown RBP10.74□□□□□ -0.69
SYNE1-225ENST00000481502 GLI3P10071 1580 aa10.73□□□□□ -0.69
SYNE1-225ENST00000481502 SLC52A2Q9HAB3 445 aa10.73□□□□□ -0.69
SYNE1-225ENST00000481502 DLG5Q8TDM6 1919 aa10.73□□□□□ -0.69
SYNE1-225ENST00000481502 MRC1P22897 1456 aa10.73□□□□□ -0.69
SYNE1-225ENST00000481502 DUSP27Q5VZP5 1158 aa10.72□□□□□ -0.69
SYNE1-225ENST00000481502 MPRIPQ6WCQ1 1025 aa10.72□□□□□ -0.69
SYNE1-225ENST00000481502 MCM10Q7L590 875 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms