RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 TATP17735 454 aaPredicted RBP13.31□□□□□ -0.28
USP39-215ENST00000481409 FNBP4Q8N3X1 1017 aaPredicted RBP13.31□□□□□ -0.28
USP39-215ENST00000481409 PHACTR3Q96KR7 559 aa13.31□□□□□ -0.28
USP39-215ENST00000481409 NUTM2BA6NNL0 878 aaPredicted RBP13.3□□□□□ -0.28
USP39-215ENST00000481409 NUTM2EB1AL46 878 aaPredicted RBP13.3□□□□□ -0.28
USP39-215ENST00000481409 E9PSI1 815 aa13.3□□□□□ -0.28
USP39-215ENST00000481409 ADAMTS2O95450 1211 aa13.3□□□□□ -0.28
USP39-215ENST00000481409 NUTM2AQ8IVF1 878 aaPredicted RBP13.3□□□□□ -0.28
USP39-215ENST00000481409 SPG7Q9UQ90 795 aa13.3□□□□□ -0.28
USP39-215ENST00000481409 DLG5Q8TDM6 1919 aa13.29□□□□□ -0.28
USP39-215ENST00000481409 OVOS2A0A0G2JMS6 1433 aa13.29□□□□□ -0.28
USP39-215ENST00000481409 PKD1L3Q7Z443 1732 aa13.28□□□□□ -0.28
USP39-215ENST00000481409 GNAT3A8MTJ3 354 aa13.28□□□□□ -0.28
USP39-215ENST00000481409 IL2RBP14784 551 aa13.28□□□□□ -0.28
USP39-215ENST00000481409 MTHFSDQ2M296 383 aaKnown RBP13.28□□□□□ -0.28
USP39-215ENST00000481409 AKAP4Q5JQC9 854 aa13.28□□□□□ -0.28
USP39-215ENST00000481409 LARP1Q6PKG0 1096 aaKnown RBP13.28□□□□□ -0.28
USP39-215ENST00000481409 UNC5CLQ8IV45 518 aa13.28□□□□□ -0.28
USP39-215ENST00000481409 USHBP1Q8N6Y0 703 aa13.28□□□□□ -0.28
USP39-215ENST00000481409 RTF1Q92541 710 aaKnown RBP13.28□□□□□ -0.28
USP39-215ENST00000481409 STRN4Q9NRL3 753 aa13.28□□□□□ -0.28
USP39-215ENST00000481409 TRIM35Q9UPQ4 493 aa13.28□□□□□ -0.28
USP39-215ENST00000481409 HSP90AB1P08238 724 aaKnown RBP13.27□□□□□ -0.29
USP39-215ENST00000481409 KCNA4P22459 653 aa13.27□□□□□ -0.29
USP39-215ENST00000481409 NEUROD2Q15784 382 aa13.27□□□□□ -0.29
USP39-215ENST00000481409 C1orf141Q5JVX7 400 aa13.27□□□□□ -0.29
USP39-215ENST00000481409 PPP4R3CPQ6ZMV5 832 aa13.27□□□□□ -0.29
USP39-215ENST00000481409 NGLY1Q96IV0 654 aa13.27□□□□□ -0.29
USP39-215ENST00000481409 MYH16Q9H6N6 1097 aa13.27□□□□□ -0.29
USP39-215ENST00000481409 BABAM1Q9NWV8 329 aa13.27□□□□□ -0.29
USP39-215ENST00000481409 MAP3K5Q99683 1374 aa13.27□□□□□ -0.29
USP39-215ENST00000481409 LRP6O75581 1613 aa13.27□□□□□ -0.29
USP39-215ENST00000481409 SLFN5Q08AF3 891 aa13.26□□□□□ -0.29
USP39-215ENST00000481409 VPS72Q15906 364 aa13.26□□□□□ -0.29
USP39-215ENST00000481409 MEX3CQ5U5Q3 659 aaKnown RBP13.26□□□□□ -0.29
USP39-215ENST00000481409 BARGINQ6ZT62 677 aa13.26□□□□□ -0.29
USP39-215ENST00000481409 TRMT2AQ8IZ69 625 aaKnown RBP13.26□□□□□ -0.29
USP39-215ENST00000481409 RRP7AQ9Y3A4 280 aaKnown RBP13.26□□□□□ -0.29
USP39-215ENST00000481409 SPATA31A1Q5TZJ5 1347 aa13.25□□□□□ -0.29
USP39-215ENST00000481409 SPATA31A5Q5VU36 1347 aa13.25□□□□□ -0.29
USP39-215ENST00000481409 SPATA31A7Q8IWB4 1347 aa13.25□□□□□ -0.29
USP39-215ENST00000481409 GNAI1P63096 354 aa13.25□□□□□ -0.29
USP39-215ENST00000481409 IFT57Q9NWB7 429 aa13.25□□□□□ -0.29
USP39-215ENST00000481409 SALL2Q9Y467 1007 aaPredicted RBP13.25□□□□□ -0.29
USP39-215ENST00000481409 WNK3Q9BYP7 1800 aa13.25□□□□□ -0.29
USP39-215ENST00000481409 MEGF6O75095 1541 aa13.24□□□□□ -0.29
USP39-215ENST00000481409 BCL9LQ86UU0 1499 aa13.24□□□□□ -0.29
USP39-215ENST00000481409 DISP2A7MBM2 1401 aa13.24□□□□□ -0.29
USP39-215ENST00000481409 PCDH11XQ9BZA7 1347 aa13.24□□□□□ -0.29
USP39-215ENST00000481409 PCDH11YQ9BZA8 1340 aa13.24□□□□□ -0.29
USP39-215ENST00000481409 CT47B1P0C2W7 299 aaPredicted RBP13.24□□□□□ -0.29
USP39-215ENST00000481409 ZNF530Q6P9A1 599 aaPredicted RBP13.24□□□□□ -0.29
USP39-215ENST00000481409 IFNL2Q8IZJ0 200 aa13.24□□□□□ -0.29
USP39-215ENST00000481409 C8orf37Q96NL8 207 aa13.24□□□□□ -0.29
USP39-215ENST00000481409 CEMIPQ8WUJ3 1361 aa13.23□□□□□ -0.29
USP39-215ENST00000481409 ZCRB1Q8TBF4 217 aaKnown RBP13.23□□□□□ -0.29
USP39-215ENST00000481409 CFAP44Q96MT7 982 aa13.23□□□□□ -0.29
USP39-215ENST00000481409 USP21Q9UK80 565 aa13.23□□□□□ -0.29
USP39-215ENST00000481409 ADAMTS7Q9UKP4 1686 aa13.23□□□□□ -0.29
USP39-215ENST00000481409 LRRC37A3O60309 1634 aa13.22□□□□□ -0.29
USP39-215ENST00000481409 DUSP27Q5VZP5 1158 aa13.22□□□□□ -0.29
USP39-215ENST00000481409 ZNF853P0CG23 659 aa13.21□□□□□ -0.29
USP39-215ENST00000481409 PHKG2P15735 406 aa13.21□□□□□ -0.29
USP39-215ENST00000481409 NKX1-1Q15270 411 aaPredicted RBP13.21□□□□□ -0.29
USP39-215ENST00000481409 ZNF428Q96B54 188 aa13.21□□□□□ -0.29
USP39-215ENST00000481409 DCAF5Q96JK2 942 aa13.21□□□□□ -0.29
USP39-215ENST00000481409 TRPC5Q9UL62 973 aaPredicted RBP13.21□□□□□ -0.29
USP39-215ENST00000481409 SOS1Q07889 1333 aaPredicted RBP13.2□□□□□ -0.3
USP39-215ENST00000481409 AFF2P51816 1311 aa13.19□□□□□ -0.3
USP39-215ENST00000481409 EXOC5O00471 708 aa13.19□□□□□ -0.3
USP39-215ENST00000481409 CHL1O00533 1208 aa13.19□□□□□ -0.3
USP39-215ENST00000481409 TAF7Q15545 349 aaPredicted RBP13.19□□□□□ -0.3
USP39-215ENST00000481409 CDCA7LQ96GN5 454 aa13.19□□□□□ -0.3
USP39-215ENST00000481409 CHMP4AQ9BY43 222 aa13.19□□□□□ -0.3
USP39-215ENST00000481409 ATRNO75882 1429 aa13.19□□□□□ -0.3
USP39-215ENST00000481409 TNS2Q63HR2 1409 aa13.19□□□□□ -0.3
USP39-215ENST00000481409 SCN11AQ9UI33 1791 aa13.19□□□□□ -0.3
USP39-215ENST00000481409 RNMTO43148 476 aaKnown RBP13.18□□□□□ -0.3
USP39-215ENST00000481409 TEFQ10587 303 aa13.18□□□□□ -0.3
USP39-215ENST00000481409 ZNF772Q68DY9 489 aaPredicted RBP13.18□□□□□ -0.3
USP39-215ENST00000481409 IL17REQ8NFR9 667 aa13.18□□□□□ -0.3
USP39-215ENST00000481409 VIRMAQ69YN4 1812 aaKnown RBP13.18□□□□□ -0.3
USP39-215ENST00000481409 MRC1P22897 1456 aa13.17□□□□□ -0.3
USP39-215ENST00000481409 SHANK3Q9BYB0 1731 aa13.17□□□□□ -0.3
USP39-215ENST00000481409 ERVV-2B6SEH9 535 aa13.17□□□□□ -0.3
USP39-215ENST00000481409 CYP27B1O15528 508 aa13.17□□□□□ -0.3
USP39-215ENST00000481409 MCM10Q7L590 875 aa13.17□□□□□ -0.3
USP39-215ENST00000481409 GJD4Q96KN9 370 aaPredicted RBP13.17□□□□□ -0.3
USP39-215ENST00000481409 USP35Q9P2H5 1018 aa13.17□□□□□ -0.3
USP39-215ENST00000481409 CCDC9Q9Y3X0 531 aaKnown RBP13.17□□□□□ -0.3
USP39-215ENST00000481409 FANCIQ9NVI1 1328 aa13.16□□□□□ -0.3
USP39-215ENST00000481409 ONECUT3O60422 494 aaPredicted RBP13.16□□□□□ -0.3
USP39-215ENST00000481409 DDB1Q16531 1140 aa13.16□□□□□ -0.3
USP39-215ENST00000481409 SPINK5Q9NQ38 1064 aaPredicted RBP13.16□□□□□ -0.3
USP39-215ENST00000481409 SIPA1L3O60292 1781 aaPredicted RBP13.15□□□□□ -0.3
USP39-215ENST00000481409 SENP3-EIF4A1A0A087X0R7 540 aa13.15□□□□□ -0.3
USP39-215ENST00000481409 C1QBPQ07021 282 aaKnown RBP13.15□□□□□ -0.3
USP39-215ENST00000481409 DCTN1Q14203 1278 aa13.15□□□□□ -0.3
USP39-215ENST00000481409 THSD7AQ9UPZ6 1657 aa13.15□□□□□ -0.31
USP39-215ENST00000481409 MPRIPQ6WCQ1 1025 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms