RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 PKD1L3Q7Z443 1732 aa16.8■□□□□ 0.28
SQSTM1-207ENST00000481335 FBLN1P23142 703 aa16.8■□□□□ 0.28
SQSTM1-207ENST00000481335 SLC15A2Q16348 729 aa16.8■□□□□ 0.28
SQSTM1-207ENST00000481335 ZCRB1Q8TBF4 217 aaKnown RBP16.8■□□□□ 0.28
SQSTM1-207ENST00000481335 SLC27A3Q5K4L6 730 aa16.79■□□□□ 0.28
SQSTM1-207ENST00000481335 NBPF6Q5VWK0 638 aa16.79■□□□□ 0.28
SQSTM1-207ENST00000481335 DDX54Q8TDD1 881 aaKnown RBP16.79■□□□□ 0.28
SQSTM1-207ENST00000481335 RAPGEF4Q8WZA2 1011 aa16.79■□□□□ 0.28
SQSTM1-207ENST00000481335 NBPF4Q96M43 638 aa16.79■□□□□ 0.28
SQSTM1-207ENST00000481335 CCER1Q8TC90 406 aaPredicted RBP16.78■□□□□ 0.28
SQSTM1-207ENST00000481335 PPP1R1BQ9UD71 204 aaPredicted RBP16.78■□□□□ 0.28
SQSTM1-207ENST00000481335 PLEKHG2Q9H7P9 1386 aa16.77■□□□□ 0.28
SQSTM1-207ENST00000481335 HSP90AB2PQ58FF8 381 aa16.77■□□□□ 0.28
SQSTM1-207ENST00000481335 NSD2O96028 1365 aa16.77■□□□□ 0.27
SQSTM1-207ENST00000481335 PCDH11XQ9BZA7 1347 aa16.76■□□□□ 0.27
SQSTM1-207ENST00000481335 PCDH11YQ9BZA8 1340 aa16.76■□□□□ 0.27
SQSTM1-207ENST00000481335 TATP17735 454 aaPredicted RBP16.76■□□□□ 0.27
SQSTM1-207ENST00000481335 HMGB2P26583 209 aaKnown RBP16.76■□□□□ 0.27
SQSTM1-207ENST00000481335 WASHC2AQ641Q2 1341 aa16.75■□□□□ 0.27
SQSTM1-207ENST00000481335 MTFR1LQ9H019 292 aa16.74■□□□□ 0.27
SQSTM1-207ENST00000481335 COL24A1Q17RW2 1714 aa16.73■□□□□ 0.27
SQSTM1-207ENST00000481335 HSPA5P11021 654 aaKnown RBP16.73■□□□□ 0.27
SQSTM1-207ENST00000481335 EMILIN1Q9Y6C2 1016 aa16.73■□□□□ 0.27
SQSTM1-207ENST00000481335 TUBGCP6Q96RT7 1819 aa16.73■□□□□ 0.27
SQSTM1-207ENST00000481335 PRIM1P49642 420 aaKnown RBP16.72■□□□□ 0.27
SQSTM1-207ENST00000481335 USHBP1Q8N6Y0 703 aa16.72■□□□□ 0.27
SQSTM1-207ENST00000481335 SYTL4Q96C24 671 aaPredicted RBP16.72■□□□□ 0.27
SQSTM1-207ENST00000481335 ITGB4P16144 1822 aa16.72■□□□□ 0.27
SQSTM1-207ENST00000481335 PTGER2P43116 358 aa16.71■□□□□ 0.27
SQSTM1-207ENST00000481335 LRRC4BQ9NT99 713 aa16.71■□□□□ 0.27
SQSTM1-207ENST00000481335 DCAF8L1A6NGE4 600 aa16.7■□□□□ 0.26
SQSTM1-207ENST00000481335 ZBTB7AO95365 584 aa16.7■□□□□ 0.26
SQSTM1-207ENST00000481335 SLC16A10Q8TF71 515 aa16.7■□□□□ 0.26
SQSTM1-207ENST00000481335 AKT1S1Q96B36 256 aa16.7■□□□□ 0.26
SQSTM1-207ENST00000481335 PDGFDQ9GZP0 370 aaPredicted RBP16.7■□□□□ 0.26
SQSTM1-207ENST00000481335 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.7■□□□□ 0.26
SQSTM1-207ENST00000481335 TOGARAM1Q9Y4F4 1720 aa16.7■□□□□ 0.26
SQSTM1-207ENST00000481335 C5P01031 1676 aa16.69■□□□□ 0.26
SQSTM1-207ENST00000481335 TAF1LQ8IZX4 1826 aa16.69■□□□□ 0.26
SQSTM1-207ENST00000481335 POLKQ9UBT6 870 aa16.69■□□□□ 0.26
SQSTM1-207ENST00000481335 MAP3K5Q99683 1374 aa16.68■□□□□ 0.26
SQSTM1-207ENST00000481335 ZNF827Q17R98 1081 aa16.68■□□□□ 0.26
SQSTM1-207ENST00000481335 SGIP1Q9BQI5 828 aa16.68■□□□□ 0.26
SQSTM1-207ENST00000481335 POLR3GLQ9BT43 218 aa16.68■□□□□ 0.26
SQSTM1-207ENST00000481335 PPM1GO15355 546 aaPredicted RBP16.67■□□□□ 0.26
SQSTM1-207ENST00000481335 SPG7Q9UQ90 795 aa16.67■□□□□ 0.26
SQSTM1-207ENST00000481335 CYP27B1O15528 508 aa16.66■□□□□ 0.26
SQSTM1-207ENST00000481335 NKX1-1Q15270 411 aaPredicted RBP16.66■□□□□ 0.26
SQSTM1-207ENST00000481335 PANK3Q9H999 370 aa16.66■□□□□ 0.26
SQSTM1-207ENST00000481335 CCNL1Q9UK58 526 aaPredicted RBP16.66■□□□□ 0.26
SQSTM1-207ENST00000481335 EYA1Q99502 592 aa16.65■□□□□ 0.26
SQSTM1-207ENST00000481335 ATF5Q9Y2D1 282 aaPredicted RBP16.65■□□□□ 0.26
SQSTM1-207ENST00000481335 SMARCC1Q92922 1105 aaPredicted RBP16.64■□□□□ 0.25
SQSTM1-207ENST00000481335 TFCP2L1Q9NZI6 479 aa16.64■□□□□ 0.25
SQSTM1-207ENST00000481335 PNPLA7Q6ZV29 1317 aa16.64■□□□□ 0.25
SQSTM1-207ENST00000481335 PALLDQ8WX93 1383 aa16.64■□□□□ 0.25
SQSTM1-207ENST00000481335 IGSF1Q8N6C5 1336 aa16.63■□□□□ 0.25
SQSTM1-207ENST00000481335 EIF4A2Q14240 407 aaKnown RBP16.62■□□□□ 0.25
SQSTM1-207ENST00000481335 ARXQ96QS3 562 aa16.62■□□□□ 0.25
SQSTM1-207ENST00000481335 KNSTRNQ9Y448 316 aa16.62■□□□□ 0.25
SQSTM1-207ENST00000481335 UTRNP46939 3433 aa16.61■□□□□ 0.25
SQSTM1-207ENST00000481335 POLD1P28340 1107 aa16.61■□□□□ 0.25
SQSTM1-207ENST00000481335 IFNL2Q8IZJ0 200 aa16.61■□□□□ 0.25
SQSTM1-207ENST00000481335 SYT17Q9BSW7 474 aa16.61■□□□□ 0.25
SQSTM1-207ENST00000481335 FHDC1Q9C0D6 1143 aaPredicted RBP16.61■□□□□ 0.25
SQSTM1-207ENST00000481335 C4BP0C0L5 1744 aa16.61■□□□□ 0.25
SQSTM1-207ENST00000481335 CHD4Q14839 1912 aa16.6■□□□□ 0.25
SQSTM1-207ENST00000481335 ZNF831Q5JPB2 1677 aa16.6■□□□□ 0.25
SQSTM1-207ENST00000481335 MPRIPQ6WCQ1 1025 aa16.6■□□□□ 0.25
SQSTM1-207ENST00000481335 FLAD1Q8NFF5 587 aa16.6■□□□□ 0.25
SQSTM1-207ENST00000481335 UBR3Q6ZT12 1888 aa16.59■□□□□ 0.25
SQSTM1-207ENST00000481335 TNNT2P45379 298 aaPredicted RBP16.59■□□□□ 0.25
SQSTM1-207ENST00000481335 MORC1Q86VD1 984 aa16.59■□□□□ 0.25
SQSTM1-207ENST00000481335 PHKG2P15735 406 aa16.58■□□□□ 0.24
SQSTM1-207ENST00000481335 KIF7Q2M1P5 1343 aa16.57■□□□□ 0.24
SQSTM1-207ENST00000481335 HSP90AB1P08238 724 aaKnown RBP16.57■□□□□ 0.24
SQSTM1-207ENST00000481335 YY1P25490 414 aa16.57■□□□□ 0.24
SQSTM1-207ENST00000481335 KCNQ4P56696 695 aa16.57■□□□□ 0.24
SQSTM1-207ENST00000481335 PIGBQ92521 554 aa16.57■□□□□ 0.24
SQSTM1-207ENST00000481335 KDRP35968 1356 aa16.56■□□□□ 0.24
SQSTM1-207ENST00000481335 AMOTQ4VCS5 1084 aa16.56■□□□□ 0.24
SQSTM1-207ENST00000481335 TMOD3Q9NYL9 352 aa16.56■□□□□ 0.24
SQSTM1-207ENST00000481335 AMER1Q5JTC6 1135 aaPredicted RBP16.55■□□□□ 0.24
SQSTM1-207ENST00000481335 ERVV-2B6SEH9 535 aa16.54■□□□□ 0.24
SQSTM1-207ENST00000481335 PLEKHO1Q53GL0 409 aaPredicted RBP16.54■□□□□ 0.24
SQSTM1-207ENST00000481335 DCAF5Q96JK2 942 aa16.54■□□□□ 0.24
SQSTM1-207ENST00000481335 NPC1L1Q9UHC9 1359 aa16.53■□□□□ 0.24
SQSTM1-207ENST00000481335 LOC102724428A0A0B4J2F2 783 aa16.53■□□□□ 0.24
SQSTM1-207ENST00000481335 SIK1P57059 783 aa16.53■□□□□ 0.24
SQSTM1-207ENST00000481335 COL23A1Q86Y22 540 aaPredicted RBP16.53■□□□□ 0.24
SQSTM1-207ENST00000481335 AK7Q96M32 723 aa16.52■□□□□ 0.24
SQSTM1-207ENST00000481335 SCN11AQ9UI33 1791 aa16.51■□□□□ 0.23
SQSTM1-207ENST00000481335 COL5A3P25940 1745 aaPredicted RBP16.51■□□□□ 0.23
SQSTM1-207ENST00000481335 GOLGB1Q14789 3259 aaKnown RBP16.51■□□□□ 0.23
SQSTM1-207ENST00000481335 SSFA2P28290 1259 aa16.51■□□□□ 0.23
SQSTM1-207ENST00000481335 CICQ96RK0 1608 aaPredicted RBP16.51■□□□□ 0.23
SQSTM1-207ENST00000481335 PER1O15534 1290 aaPredicted RBP16.5■□□□□ 0.23
SQSTM1-207ENST00000481335 VIRMAQ69YN4 1812 aaKnown RBP16.49■□□□□ 0.23
SQSTM1-207ENST00000481335 KDM6AO15550 1401 aaPredicted RBP16.49■□□□□ 0.23
SQSTM1-207ENST00000481335 MSH5O43196 834 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms