RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 SLIT2O94813 1529 aa23.03■■□□□ 1.28
UPF3A-206ENST00000480362 MEX3CQ5U5Q3 659 aaKnown RBP23.01■■□□□ 1.27
UPF3A-206ENST00000480362 NRAPQ86VF7 1730 aa23.01■■□□□ 1.27
UPF3A-206ENST00000480362 NWD2Q9ULI1 1742 aa23■■□□□ 1.27
UPF3A-206ENST00000480362 MEGF6O75095 1541 aa23■■□□□ 1.27
UPF3A-206ENST00000480362 SLFN5Q08AF3 891 aa23■■□□□ 1.27
UPF3A-206ENST00000480362 SPINK5Q9NQ38 1064 aaPredicted RBP23■■□□□ 1.27
UPF3A-206ENST00000480362 USP35Q9P2H5 1018 aa23■■□□□ 1.27
UPF3A-206ENST00000480362 GNAT3A8MTJ3 354 aa22.98■■□□□ 1.27
UPF3A-206ENST00000480362 IL2RBP14784 551 aa22.98■■□□□ 1.27
UPF3A-206ENST00000480362 DCTN1Q14203 1278 aa22.98■■□□□ 1.27
UPF3A-206ENST00000480362 ZNF530Q6P9A1 599 aaPredicted RBP22.98■■□□□ 1.27
UPF3A-206ENST00000480362 UNC5CLQ8IV45 518 aa22.98■■□□□ 1.27
UPF3A-206ENST00000480362 FNBP4Q8N3X1 1017 aaPredicted RBP22.98■■□□□ 1.27
UPF3A-206ENST00000480362 RTF1Q92541 710 aaKnown RBP22.98■■□□□ 1.27
UPF3A-206ENST00000480362 E9PSI1 815 aa22.97■■□□□ 1.27
UPF3A-206ENST00000480362 HTATSF1O43719 755 aaKnown RBP22.97■■□□□ 1.27
UPF3A-206ENST00000480362 THUMPD2Q9BTF0 503 aaKnown RBP22.97■■□□□ 1.27
UPF3A-206ENST00000480362 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.97■■□□□ 1.27
UPF3A-206ENST00000480362 SPG7Q9UQ90 795 aa22.97■■□□□ 1.27
UPF3A-206ENST00000480362 MCM10Q7L590 875 aa22.96■■□□□ 1.27
UPF3A-206ENST00000480362 TRMT2AQ8IZ69 625 aaKnown RBP22.96■■□□□ 1.27
UPF3A-206ENST00000480362 MAP3K5Q99683 1374 aa22.96■■□□□ 1.27
UPF3A-206ENST00000480362 PLEKHG2Q9H7P9 1386 aa22.96■■□□□ 1.27
UPF3A-206ENST00000480362 CALD1Q05682 793 aaKnown RBP22.95■■□□□ 1.26
UPF3A-206ENST00000480362 IL16Q14005 1332 aa22.95■■□□□ 1.26
UPF3A-206ENST00000480362 BCL9LQ86UU0 1499 aa22.95■■□□□ 1.26
UPF3A-206ENST00000480362 OVOS2A0A0G2JMS6 1433 aa22.94■■□□□ 1.26
UPF3A-206ENST00000480362 SPATA31A1Q5TZJ5 1347 aa22.94■■□□□ 1.26
UPF3A-206ENST00000480362 AKAP4Q5JQC9 854 aa22.94■■□□□ 1.26
UPF3A-206ENST00000480362 C1orf141Q5JVX7 400 aa22.94■■□□□ 1.26
UPF3A-206ENST00000480362 DUSP27Q5VZP5 1158 aa22.94■■□□□ 1.26
UPF3A-206ENST00000480362 USP21Q9UK80 565 aa22.94■■□□□ 1.26
UPF3A-206ENST00000480362 SPATA31A5Q5VU36 1347 aa22.93■■□□□ 1.26
UPF3A-206ENST00000480362 SPATA31A7Q8IWB4 1347 aa22.93■■□□□ 1.26
UPF3A-206ENST00000480362 CCDC9Q9Y3X0 531 aaKnown RBP22.93■■□□□ 1.26
UPF3A-206ENST00000480362 PARP4Q9UKK3 1724 aaKnown RBP22.93■■□□□ 1.26
UPF3A-206ENST00000480362 VPS72Q15906 364 aa22.92■■□□□ 1.26
UPF3A-206ENST00000480362 ZCRB1Q8TBF4 217 aaKnown RBP22.92■■□□□ 1.26
UPF3A-206ENST00000480362 MYH16Q9H6N6 1097 aa22.92■■□□□ 1.26
UPF3A-206ENST00000480362 THRAP3Q9Y2W1 955 aaKnown RBP22.92■■□□□ 1.26
UPF3A-206ENST00000480362 IL17REQ8NFR9 667 aa22.91■■□□□ 1.26
UPF3A-206ENST00000480362 LAS1LQ9Y4W2 734 aaKnown RBP22.91■■□□□ 1.26
UPF3A-206ENST00000480362 PKD1L3Q7Z443 1732 aa22.91■■□□□ 1.26
UPF3A-206ENST00000480362 AFF2P51816 1311 aa22.9■■□□□ 1.26
UPF3A-206ENST00000480362 PHKG2P15735 406 aa22.89■■□□□ 1.25
UPF3A-206ENST00000480362 GNAI1P63096 354 aa22.89■■□□□ 1.25
UPF3A-206ENST00000480362 IFNL2Q8IZJ0 200 aa22.89■■□□□ 1.25
UPF3A-206ENST00000480362 DISP2A7MBM2 1401 aa22.89■■□□□ 1.25
UPF3A-206ENST00000480362 CYP27B1O15528 508 aa22.88■■□□□ 1.25
UPF3A-206ENST00000480362 MPRIPQ6WCQ1 1025 aa22.88■■□□□ 1.25
UPF3A-206ENST00000480362 LGR6Q9HBX8 967 aa22.88■■□□□ 1.25
UPF3A-206ENST00000480362 IFT57Q9NWB7 429 aa22.88■■□□□ 1.25
UPF3A-206ENST00000480362 ZNF853P0CG23 659 aa22.87■■□□□ 1.25
UPF3A-206ENST00000480362 TSR2Q969E8 191 aaKnown RBP22.87■■□□□ 1.25
UPF3A-206ENST00000480362 CFAP44Q96MT7 982 aa22.87■■□□□ 1.25
UPF3A-206ENST00000480362 CDCA7Q9BWT1 371 aaPredicted RBP22.87■■□□□ 1.25
UPF3A-206ENST00000480362 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.87■■□□□ 1.25
UPF3A-206ENST00000480362 PCDH11XQ9BZA7 1347 aa22.86■■□□□ 1.25
UPF3A-206ENST00000480362 PCDH11YQ9BZA8 1340 aa22.86■■□□□ 1.25
UPF3A-206ENST00000480362 RNMTO43148 476 aaKnown RBP22.86■■□□□ 1.25
UPF3A-206ENST00000480362 BARGINQ6ZT62 677 aa22.86■■□□□ 1.25
UPF3A-206ENST00000480362 FANCIQ9NVI1 1328 aa22.85■■□□□ 1.25
UPF3A-206ENST00000480362 CEMIPQ8WUJ3 1361 aa22.85■■□□□ 1.25
UPF3A-206ENST00000480362 EXOC5O00471 708 aa22.84■■□□□ 1.25
UPF3A-206ENST00000480362 DDX54Q8TDD1 881 aaKnown RBP22.84■■□□□ 1.25
UPF3A-206ENST00000480362 WNK3Q9BYP7 1800 aa22.84■■□□□ 1.25
UPF3A-206ENST00000480362 CHL1O00533 1208 aa22.83■■□□□ 1.25
UPF3A-206ENST00000480362 HSP90AB1P08238 724 aaKnown RBP22.83■■□□□ 1.25
UPF3A-206ENST00000480362 MBIPQ9NS73 344 aa22.83■■□□□ 1.25
UPF3A-206ENST00000480362 LRRC37A3O60309 1634 aa22.82■■□□□ 1.24
UPF3A-206ENST00000480362 TAF7Q15545 349 aaPredicted RBP22.82■■□□□ 1.24
UPF3A-206ENST00000480362 DCAF5Q96JK2 942 aa22.82■■□□□ 1.24
UPF3A-206ENST00000480362 TEFQ10587 303 aa22.81■■□□□ 1.24
UPF3A-206ENST00000480362 MIS18AQ9NYP9 233 aa22.81■■□□□ 1.24
UPF3A-206ENST00000480362 TRPC5Q9UL62 973 aaPredicted RBP22.81■■□□□ 1.24
UPF3A-206ENST00000480362 SHANK3Q9BYB0 1731 aa22.81■■□□□ 1.24
UPF3A-206ENST00000480362 EXOSC9Q06265 439 aaKnown RBP22.8■■□□□ 1.24
UPF3A-206ENST00000480362 FAM98CQ17RN3 349 aaKnown RBP22.8■■□□□ 1.24
UPF3A-206ENST00000480362 GJD4Q96KN9 370 aaPredicted RBP22.8■■□□□ 1.24
UPF3A-206ENST00000480362 KDM6AO15550 1401 aaPredicted RBP22.8■■□□□ 1.24
UPF3A-206ENST00000480362 ADAMTS7Q9UKP4 1686 aa22.79■■□□□ 1.24
UPF3A-206ENST00000480362 NKX1-1Q15270 411 aaPredicted RBP22.79■■□□□ 1.24
UPF3A-206ENST00000480362 DDB1Q16531 1140 aa22.79■■□□□ 1.24
UPF3A-206ENST00000480362 TSPYL4Q9UJ04 414 aa22.79■■□□□ 1.24
UPF3A-206ENST00000480362 RCAN3Q9UKA8 241 aa22.79■■□□□ 1.24
UPF3A-206ENST00000480362 VIRMAQ69YN4 1812 aaKnown RBP22.79■■□□□ 1.24
UPF3A-206ENST00000480362 ATRNO75882 1429 aa22.79■■□□□ 1.24
UPF3A-206ENST00000480362 QTRT2Q9H974 415 aaKnown RBP22.78■■□□□ 1.24
UPF3A-206ENST00000480362 BABAM1Q9NWV8 329 aa22.78■■□□□ 1.24
UPF3A-206ENST00000480362 SCN11AQ9UI33 1791 aa22.78■■□□□ 1.24
UPF3A-206ENST00000480362 TNS2Q63HR2 1409 aa22.77■■□□□ 1.24
UPF3A-206ENST00000480362 SUPT16HQ9Y5B9 1047 aaKnown RBP22.77■■□□□ 1.24
UPF3A-206ENST00000480362 SLC52A2Q9HAB3 445 aa22.75■■□□□ 1.23
UPF3A-206ENST00000480362 GLI3P10071 1580 aa22.75■■□□□ 1.23
UPF3A-206ENST00000480362 BTBD11A6QL63 1104 aa22.74■■□□□ 1.23
UPF3A-206ENST00000480362 CT47B1P0C2W7 299 aaPredicted RBP22.73■■□□□ 1.23
UPF3A-206ENST00000480362 CABP4P57796 275 aa22.73■■□□□ 1.23
UPF3A-206ENST00000480362 NFATC2IPQ8NCF5 419 aa22.73■■□□□ 1.23
UPF3A-206ENST00000480362 A0A0G2JS52 829 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms