RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 NFE2L2Q16236 605 aa17.35■□□□□ 0.37
CHD3-210ENST00000479080 USP35Q9P2H5 1018 aa17.35■□□□□ 0.37
CHD3-210ENST00000479080 TRIM35Q9UPQ4 493 aa17.35■□□□□ 0.37
CHD3-210ENST00000479080 PLEKHG2Q9H7P9 1386 aa17.35■□□□□ 0.37
CHD3-210ENST00000479080 MAPK8IP3Q9UPT6 1336 aa17.34■□□□□ 0.37
CHD3-210ENST00000479080 THSD7AQ9UPZ6 1657 aa17.34■□□□□ 0.37
CHD3-210ENST00000479080 SALL2Q9Y467 1007 aaPredicted RBP17.34■□□□□ 0.37
CHD3-210ENST00000479080 LRRC37A3O60309 1634 aa17.33■□□□□ 0.37
CHD3-210ENST00000479080 RGS17Q9UGC6 210 aaPredicted RBP17.33■□□□□ 0.36
CHD3-210ENST00000479080 DLG5Q8TDM6 1919 aa17.33■□□□□ 0.36
CHD3-210ENST00000479080 ZBED9Q6R2W3 1325 aa17.32■□□□□ 0.36
CHD3-210ENST00000479080 IL2RBP14784 551 aa17.32■□□□□ 0.36
CHD3-210ENST00000479080 TATP17735 454 aaPredicted RBP17.32■□□□□ 0.36
CHD3-210ENST00000479080 RAPGEF4Q8WZA2 1011 aa17.32■□□□□ 0.36
CHD3-210ENST00000479080 PNNQ9H307 717 aaKnown RBP17.32■□□□□ 0.36
CHD3-210ENST00000479080 ADAMTS7Q9UKP4 1686 aa17.32■□□□□ 0.36
CHD3-210ENST00000479080 NEUROD2Q15784 382 aa17.31■□□□□ 0.36
CHD3-210ENST00000479080 TNS2Q63HR2 1409 aa17.3■□□□□ 0.36
CHD3-210ENST00000479080 CYP27B1O15528 508 aa17.3■□□□□ 0.36
CHD3-210ENST00000479080 RIPK4P57078 832 aa17.3■□□□□ 0.36
CHD3-210ENST00000479080 NCBP3Q53F19 620 aaKnown RBP17.3■□□□□ 0.36
CHD3-210ENST00000479080 BARGINQ6ZT62 677 aa17.3■□□□□ 0.36
CHD3-210ENST00000479080 THRAP3Q9Y2W1 955 aaKnown RBP17.3■□□□□ 0.36
CHD3-210ENST00000479080 KDM6AO15550 1401 aaPredicted RBP17.3■□□□□ 0.36
CHD3-210ENST00000479080 CCDC27Q2M243 656 aa17.29■□□□□ 0.36
CHD3-210ENST00000479080 ZNF530Q6P9A1 599 aaPredicted RBP17.29■□□□□ 0.36
CHD3-210ENST00000479080 WWC1Q8IX03 1113 aa17.29■□□□□ 0.36
CHD3-210ENST00000479080 GAS2L2Q8NHY3 880 aa17.29■□□□□ 0.36
CHD3-210ENST00000479080 THUMPD2Q9BTF0 503 aaKnown RBP17.29■□□□□ 0.36
CHD3-210ENST00000479080 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.29■□□□□ 0.36
CHD3-210ENST00000479080 MAP3K5Q99683 1374 aa17.28■□□□□ 0.36
CHD3-210ENST00000479080 DCTN1Q14203 1278 aa17.28■□□□□ 0.36
CHD3-210ENST00000479080 AMOTQ4VCS5 1084 aa17.28■□□□□ 0.36
CHD3-210ENST00000479080 PLEKHO1Q53GL0 409 aaPredicted RBP17.28■□□□□ 0.36
CHD3-210ENST00000479080 GJD4Q96KN9 370 aaPredicted RBP17.28■□□□□ 0.36
CHD3-210ENST00000479080 SPINK5Q9NQ38 1064 aaPredicted RBP17.28■□□□□ 0.36
CHD3-210ENST00000479080 TRPC5Q9UL62 973 aaPredicted RBP17.28■□□□□ 0.36
CHD3-210ENST00000479080 CCDC9Q9Y3X0 531 aaKnown RBP17.28■□□□□ 0.36
CHD3-210ENST00000479080 PHKG2P15735 406 aa17.27■□□□□ 0.36
CHD3-210ENST00000479080 FAM98CQ17RN3 349 aaKnown RBP17.27■□□□□ 0.36
CHD3-210ENST00000479080 ZCRB1Q8TBF4 217 aaKnown RBP17.26■□□□□ 0.35
CHD3-210ENST00000479080 QTRT2Q9H974 415 aaKnown RBP17.26■□□□□ 0.35
CHD3-210ENST00000479080 CEMIPQ8WUJ3 1361 aa17.26■□□□□ 0.35
CHD3-210ENST00000479080 TOGARAM1Q9Y4F4 1720 aa17.25■□□□□ 0.35
CHD3-210ENST00000479080 AKAP4Q5JQC9 854 aa17.25■□□□□ 0.35
CHD3-210ENST00000479080 MCM10Q7L590 875 aa17.25■□□□□ 0.35
CHD3-210ENST00000479080 IL17REQ8NFR9 667 aa17.25■□□□□ 0.35
CHD3-210ENST00000479080 CDCA7LQ96GN5 454 aa17.25■□□□□ 0.35
CHD3-210ENST00000479080 ONECUT3O60422 494 aaPredicted RBP17.24■□□□□ 0.35
CHD3-210ENST00000479080 NEFMP07197 916 aa17.24■□□□□ 0.35
CHD3-210ENST00000479080 NGEFQ8N5V2 710 aa17.24■□□□□ 0.35
CHD3-210ENST00000479080 LGR6Q9HBX8 967 aa17.24■□□□□ 0.35
CHD3-210ENST00000479080 SPG7Q9UQ90 795 aa17.24■□□□□ 0.35
CHD3-210ENST00000479080 PCDH11XQ9BZA7 1347 aa17.23■□□□□ 0.35
CHD3-210ENST00000479080 PCDH11YQ9BZA8 1340 aa17.23■□□□□ 0.35
CHD3-210ENST00000479080 GNAT3A8MTJ3 354 aa17.23■□□□□ 0.35
CHD3-210ENST00000479080 POTEAQ6S8J7 498 aa17.23■□□□□ 0.35
CHD3-210ENST00000479080 CDCA7Q9BWT1 371 aaPredicted RBP17.23■□□□□ 0.35
CHD3-210ENST00000479080 MRC1P22897 1456 aa17.23■□□□□ 0.35
CHD3-210ENST00000479080 RNMTO43148 476 aaKnown RBP17.22■□□□□ 0.35
CHD3-210ENST00000479080 ZNF772Q68DY9 489 aaPredicted RBP17.22■□□□□ 0.35
CHD3-210ENST00000479080 MPRIPQ6WCQ1 1025 aa17.22■□□□□ 0.35
CHD3-210ENST00000479080 HTATSF1O43719 755 aaKnown RBP17.21■□□□□ 0.35
CHD3-210ENST00000479080 NKX1-1Q15270 411 aaPredicted RBP17.21■□□□□ 0.35
CHD3-210ENST00000479080 IFNL2Q8IZJ0 200 aa17.21■□□□□ 0.35
CHD3-210ENST00000479080 MARCH10Q8NA82 808 aaPredicted RBP17.21■□□□□ 0.35
CHD3-210ENST00000479080 SCN11AQ9UI33 1791 aa17.2■□□□□ 0.34
CHD3-210ENST00000479080 ZNF853P0CG23 659 aa17.2■□□□□ 0.34
CHD3-210ENST00000479080 DDB1Q16531 1140 aa17.2■□□□□ 0.34
CHD3-210ENST00000479080 WDR63Q8IWG1 891 aa17.2■□□□□ 0.34
CHD3-210ENST00000479080 TRMT2AQ8IZ69 625 aaKnown RBP17.2■□□□□ 0.34
CHD3-210ENST00000479080 DDX54Q8TDD1 881 aaKnown RBP17.2■□□□□ 0.34
CHD3-210ENST00000479080 SIPA1L3O60292 1781 aaPredicted RBP17.2■□□□□ 0.34
CHD3-210ENST00000479080 VIRMAQ69YN4 1812 aaKnown RBP17.19■□□□□ 0.34
CHD3-210ENST00000479080 EXOC5O00471 708 aa17.19■□□□□ 0.34
CHD3-210ENST00000479080 SLFN5Q08AF3 891 aa17.19■□□□□ 0.34
CHD3-210ENST00000479080 LMOD3Q0VAK6 560 aa17.19■□□□□ 0.34
CHD3-210ENST00000479080 C1orf141Q5JVX7 400 aa17.19■□□□□ 0.34
CHD3-210ENST00000479080 RGS12O14924 1447 aa17.19■□□□□ 0.34
CHD3-210ENST00000479080 IL16Q14005 1332 aa17.18■□□□□ 0.34
CHD3-210ENST00000479080 RBM6P78332 1123 aaKnown RBP17.17■□□□□ 0.34
CHD3-210ENST00000479080 GOLGA2Q08379 1002 aa17.17■□□□□ 0.34
CHD3-210ENST00000479080 DUSP27Q5VZP5 1158 aa17.17■□□□□ 0.34
CHD3-210ENST00000479080 SEPT12Q8IYM1 358 aa17.17■□□□□ 0.34
CHD3-210ENST00000479080 DOT1LQ8TEK3 1739 aa17.16■□□□□ 0.34
CHD3-210ENST00000479080 DCAF5Q96JK2 942 aa17.16■□□□□ 0.34
CHD3-210ENST00000479080 BRWD3Q6RI45 1802 aa17.16■□□□□ 0.34
CHD3-210ENST00000479080 PDE3BQ13370 1112 aa17.15■□□□□ 0.34
CHD3-210ENST00000479080 RTF1Q92541 710 aaKnown RBP17.15■□□□□ 0.34
CHD3-210ENST00000479080 TSR2Q969E8 191 aaKnown RBP17.15■□□□□ 0.34
CHD3-210ENST00000479080 FANCIQ9NVI1 1328 aa17.15■□□□□ 0.34
CHD3-210ENST00000479080 KDM3BQ7LBC6 1761 aa17.15■□□□□ 0.34
CHD3-210ENST00000479080 CHL1O00533 1208 aa17.14■□□□□ 0.33
CHD3-210ENST00000479080 IFT57Q9NWB7 429 aa17.14■□□□□ 0.33
CHD3-210ENST00000479080 PAPPAQ13219 1627 aa17.14■□□□□ 0.33
CHD3-210ENST00000479080 E9PSI1 815 aa17.13■□□□□ 0.33
CHD3-210ENST00000479080 FAM182BQ5T319 152 aa17.13■□□□□ 0.33
CHD3-210ENST00000479080 SLC52A2Q9HAB3 445 aa17.13■□□□□ 0.33
CHD3-210ENST00000479080 MBIPQ9NS73 344 aa17.13■□□□□ 0.33
CHD3-210ENST00000479080 MIS18AQ9NYP9 233 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms