RNA–Protein interactions for RNA: ENST00000478531.5

BRCA1-215, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-215ENST00000478531 COL3A1P02461 1466 aaPredicted RBP9.31□□□□□ -0.92
BRCA1-215ENST00000478531 NCAPD2Q15021 1401 aa9.31□□□□□ -0.92
BRCA1-215ENST00000478531 TATP17735 454 aaPredicted RBP9.3□□□□□ -0.92
BRCA1-215ENST00000478531 PPP2R1AP30153 589 aa9.3□□□□□ -0.92
BRCA1-215ENST00000478531 FAM196AQ6ZSG2 479 aa9.3□□□□□ -0.92
BRCA1-215ENST00000478531 DDX54Q8TDD1 881 aaKnown RBP9.3□□□□□ -0.92
BRCA1-215ENST00000478531 PARD3Q8TEW0 1356 aa9.3□□□□□ -0.92
BRCA1-215ENST00000478531 IGSF1Q8N6C5 1336 aa9.3□□□□□ -0.92
BRCA1-215ENST00000478531 TRIM37O94972 964 aa9.3□□□□□ -0.92
BRCA1-215ENST00000478531 SF3B2Q13435 895 aaKnown RBP9.3□□□□□ -0.92
BRCA1-215ENST00000478531 NHSQ6T4R5 1651 aa9.29□□□□□ -0.92
BRCA1-215ENST00000478531 DIAPH1O60610 1272 aaKnown RBP9.29□□□□□ -0.92
BRCA1-215ENST00000478531 IL13P35225 146 aa9.29□□□□□ -0.92
BRCA1-215ENST00000478531 AEBP1Q8IUX7 1158 aa9.29□□□□□ -0.92
BRCA1-215ENST00000478531 ZCRB1Q8TBF4 217 aaKnown RBP9.29□□□□□ -0.92
BRCA1-215ENST00000478531 SRCAPQ6ZRS2 3230 aa9.29□□□□□ -0.92
BRCA1-215ENST00000478531 CNKSR2Q8WXI2 1034 aa9.28□□□□□ -0.92
BRCA1-215ENST00000478531 CFAP53Q96M91 514 aa9.28□□□□□ -0.92
BRCA1-215ENST00000478531 BTAF1O14981 1849 aa9.28□□□□□ -0.92
BRCA1-215ENST00000478531 U2SURPO15042 1029 aaKnown RBP9.28□□□□□ -0.92
BRCA1-215ENST00000478531 SULT6B1Q6IMI4 303 aa9.28□□□□□ -0.92
BRCA1-215ENST00000478531 ACSBG1Q96GR2 724 aa9.28□□□□□ -0.92
BRCA1-215ENST00000478531 PCDH11XQ9BZA7 1347 aa9.27□□□□□ -0.92
BRCA1-215ENST00000478531 PCDH11YQ9BZA8 1340 aa9.27□□□□□ -0.92
BRCA1-215ENST00000478531 VIRMAQ69YN4 1812 aaKnown RBP9.27□□□□□ -0.93
BRCA1-215ENST00000478531 TOGARAM1Q9Y4F4 1720 aa9.27□□□□□ -0.93
BRCA1-215ENST00000478531 HMOX1P09601 288 aa9.27□□□□□ -0.93
BRCA1-215ENST00000478531 DEFB132Q7Z7B7 95 aa9.27□□□□□ -0.93
BRCA1-215ENST00000478531 RALBP1Q15311 655 aa9.26□□□□□ -0.93
BRCA1-215ENST00000478531 CCDC125Q86Z20 511 aa9.26□□□□□ -0.93
BRCA1-215ENST00000478531 ITGB4P16144 1822 aa9.26□□□□□ -0.93
BRCA1-215ENST00000478531 PTF1AQ7RTS3 328 aa9.26□□□□□ -0.93
BRCA1-215ENST00000478531 SPG7Q9UQ90 795 aa9.26□□□□□ -0.93
BRCA1-215ENST00000478531 KDRP35968 1356 aa9.25□□□□□ -0.93
BRCA1-215ENST00000478531 APBA3O96018 575 aa9.25□□□□□ -0.93
BRCA1-215ENST00000478531 BAG6P46379 1132 aa9.25□□□□□ -0.93
BRCA1-215ENST00000478531 SYTL4Q96C24 671 aaPredicted RBP9.25□□□□□ -0.93
BRCA1-215ENST00000478531 MYBBP1AQ9BQG0 1328 aaKnown RBP9.25□□□□□ -0.93
BRCA1-215ENST00000478531 BCL9O00512 1426 aa9.25□□□□□ -0.93
BRCA1-215ENST00000478531 RGPD3A6NKT7 1758 aaPredicted RBP9.25□□□□□ -0.93
BRCA1-215ENST00000478531 RGPD4Q7Z3J3 1758 aa9.25□□□□□ -0.93
BRCA1-215ENST00000478531 CYP27B1O15528 508 aa9.24□□□□□ -0.93
BRCA1-215ENST00000478531 KCNQ2O43526 872 aa9.24□□□□□ -0.93
BRCA1-215ENST00000478531 RREB1Q92766 1687 aa9.24□□□□□ -0.93
BRCA1-215ENST00000478531 EN1Q05925 392 aaPredicted RBP9.24□□□□□ -0.93
BRCA1-215ENST00000478531 PRKRIP1Q9H875 184 aaPredicted RBP9.24□□□□□ -0.93
BRCA1-215ENST00000478531 NUDCQ9Y266 331 aa9.24□□□□□ -0.93
BRCA1-215ENST00000478531 NUP188Q5SRE5 1749 aa9.23□□□□□ -0.93
BRCA1-215ENST00000478531 U2AF1L5P0DN76 240 aaPredicted RBP9.23□□□□□ -0.93
BRCA1-215ENST00000478531 U2AF1Q01081 240 aaKnown RBP eCLIP9.23□□□□□ -0.93
BRCA1-215ENST00000478531 ZNF530Q6P9A1 599 aaPredicted RBP9.23□□□□□ -0.93
BRCA1-215ENST00000478531 BCL11BQ9C0K0 894 aaPredicted RBP9.23□□□□□ -0.93
BRCA1-215ENST00000478531 NPM3O75607 178 aaKnown RBP9.23□□□□□ -0.93
BRCA1-215ENST00000478531 PLEKHO1Q53GL0 409 aaPredicted RBP9.23□□□□□ -0.93
BRCA1-215ENST00000478531 PLEKHG2Q9H7P9 1386 aa9.22□□□□□ -0.93
BRCA1-215ENST00000478531 SCN11AQ9UI33 1791 aa9.22□□□□□ -0.93
BRCA1-215ENST00000478531 PHKG2P15735 406 aa9.22□□□□□ -0.93
BRCA1-215ENST00000478531 PRIM1P49642 420 aaKnown RBP9.22□□□□□ -0.93
BRCA1-215ENST00000478531 EZH2Q15910 746 aaKnown RBP9.22□□□□□ -0.93
BRCA1-215ENST00000478531 AMOTQ4VCS5 1084 aa9.22□□□□□ -0.93
BRCA1-215ENST00000478531 IFNL2Q8IZJ0 200 aa9.22□□□□□ -0.93
BRCA1-215ENST00000478531 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.22□□□□□ -0.934e-6■■■■■ 27.4
BRCA1-215ENST00000478531 C1orf141Q5JVX7 400 aa9.21□□□□□ -0.93
BRCA1-215ENST00000478531 PRKAR2BP31323 418 aa9.21□□□□□ -0.94
BRCA1-215ENST00000478531 DLG5Q8TDM6 1919 aa9.2□□□□□ -0.94
BRCA1-215ENST00000478531 LY75O60449 1722 aa9.2□□□□□ -0.94
BRCA1-215ENST00000478531 ANP32CO43423 234 aa9.2□□□□□ -0.94
BRCA1-215ENST00000478531 MPRIPQ6WCQ1 1025 aa9.2□□□□□ -0.94
BRCA1-215ENST00000478531 CAMKK2Q96RR4 588 aa9.2□□□□□ -0.94
BRCA1-215ENST00000478531 RSPH6AQ9H0K4 717 aa9.2□□□□□ -0.94
BRCA1-215ENST00000478531 KDM6AO15550 1401 aaPredicted RBP9.2□□□□□ -0.94
BRCA1-215ENST00000478531 MTHFSDQ2M296 383 aaKnown RBP9.19□□□□□ -0.94
BRCA1-215ENST00000478531 NKX1-1Q15270 411 aaPredicted RBP9.19□□□□□ -0.94
BRCA1-215ENST00000478531 HSP90AB1P08238 724 aaKnown RBP9.18□□□□□ -0.94
BRCA1-215ENST00000478531 DCAF5Q96JK2 942 aa9.18□□□□□ -0.94
BRCA1-215ENST00000478531 PHACTR3Q96KR7 559 aa9.18□□□□□ -0.94
BRCA1-215ENST00000478531 TMOD3Q9NYL9 352 aa9.18□□□□□ -0.94
BRCA1-215ENST00000478531 PLSCR1O15162 318 aa9.17□□□□□ -0.94
BRCA1-215ENST00000478531 FCHSD2O94868 740 aa9.17□□□□□ -0.94
BRCA1-215ENST00000478531 WDR43Q15061 677 aaKnown RBP eCLIP9.17□□□□□ -0.94
BRCA1-215ENST00000478531 AKAP4Q5JQC9 854 aa9.17□□□□□ -0.94
BRCA1-215ENST00000478531 MAP3K5Q99683 1374 aa9.17□□□□□ -0.94
BRCA1-215ENST00000478531 C5P01031 1676 aa9.17□□□□□ -0.94
BRCA1-215ENST00000478531 ADAMTS7Q9UKP4 1686 aa9.17□□□□□ -0.94
BRCA1-215ENST00000478531 NEFMP07197 916 aa9.17□□□□□ -0.94
BRCA1-215ENST00000478531 GAS2L2Q8NHY3 880 aa9.17□□□□□ -0.94
BRCA1-215ENST00000478531 PIGBQ92521 554 aa9.17□□□□□ -0.94
BRCA1-215ENST00000478531 TAF1LQ8IZX4 1826 aa9.16□□□□□ -0.94
BRCA1-215ENST00000478531 MAPK8IP3Q9UPT6 1336 aa9.16□□□□□ -0.94
BRCA1-215ENST00000478531 KCNQ4P56696 695 aa9.16□□□□□ -0.94
BRCA1-215ENST00000478531 TXNRD1Q16881 649 aa9.16□□□□□ -0.94
BRCA1-215ENST00000478531 PALLDQ8WX93 1383 aa9.16□□□□□ -0.94
BRCA1-215ENST00000478531 SIPA1L3O60292 1781 aaPredicted RBP9.16□□□□□ -0.94
BRCA1-215ENST00000478531 PSDA5PKW4 1024 aaPredicted RBP9.15□□□□□ -0.94
BRCA1-215ENST00000478531 CABP4P57796 275 aa9.15□□□□□ -0.94
BRCA1-215ENST00000478531 LGR6Q9HBX8 967 aa9.15□□□□□ -0.94
BRCA1-215ENST00000478531 PAPPAQ13219 1627 aa9.15□□□□□ -0.94
BRCA1-215ENST00000478531 MRC1P22897 1456 aa9.15□□□□□ -0.94
BRCA1-215ENST00000478531 TUBGCP6Q96RT7 1819 aa9.15□□□□□ -0.94
BRCA1-215ENST00000478531 GNAT3A8MTJ3 354 aa9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 318.4 ms