RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 R3HDM1Q15032 1099 aaKnown RBP29.89■■■□□ 2.38
COL9A3-211ENST00000477612 ZCRB1Q8TBF4 217 aaKnown RBP29.89■■■□□ 2.38
COL9A3-211ENST00000477612 NBPF14Q5TI25 921 aa29.88■■■□□ 2.37
COL9A3-211ENST00000477612 PROM2Q8N271 834 aa29.88■■■□□ 2.37
COL9A3-211ENST00000477612 USHBP1Q8N6Y0 703 aa29.87■■■□□ 2.37
COL9A3-211ENST00000477612 DDX54Q8TDD1 881 aaKnown RBP29.86■■■□□ 2.37
COL9A3-211ENST00000477612 ACSBG1Q96GR2 724 aa29.86■■■□□ 2.37
COL9A3-211ENST00000477612 PPM1GO15355 546 aaPredicted RBP29.85■■■□□ 2.37
COL9A3-211ENST00000477612 RAPGEF4Q8WZA2 1011 aa29.85■■■□□ 2.37
COL9A3-211ENST00000477612 KNSTRNQ9Y448 316 aa29.84■■■□□ 2.37
COL9A3-211ENST00000477612 TATP17735 454 aaPredicted RBP29.83■■■□□ 2.37
COL9A3-211ENST00000477612 PKD1L3Q7Z443 1732 aa29.82■■■□□ 2.36
COL9A3-211ENST00000477612 DOT1LQ8TEK3 1739 aa29.82■■■□□ 2.36
COL9A3-211ENST00000477612 TXNRD1Q16881 649 aa29.81■■■□□ 2.36
COL9A3-211ENST00000477612 AMER1Q5JTC6 1135 aaPredicted RBP29.81■■■□□ 2.36
COL9A3-211ENST00000477612 PER1O15534 1290 aaPredicted RBP29.8■■■□□ 2.36
COL9A3-211ENST00000477612 TNNT2P45379 298 aaPredicted RBP29.8■■■□□ 2.36
COL9A3-211ENST00000477612 EYA1Q99502 592 aa29.79■■■□□ 2.36
COL9A3-211ENST00000477612 MORC1Q86VD1 984 aa29.78■■■□□ 2.36
COL9A3-211ENST00000477612 EIF4A2Q14240 407 aaKnown RBP29.76■■■□□ 2.35
COL9A3-211ENST00000477612 PCDH11XQ9BZA7 1347 aa29.74■■■□□ 2.35
COL9A3-211ENST00000477612 PCDH11YQ9BZA8 1340 aa29.74■■■□□ 2.35
COL9A3-211ENST00000477612 ANO8Q9HCE9 1232 aaPredicted RBP29.74■■■□□ 2.35
COL9A3-211ENST00000477612 PRIM1P49642 420 aaKnown RBP29.73■■■□□ 2.35
COL9A3-211ENST00000477612 PLEKHG2Q9H7P9 1386 aa29.73■■■□□ 2.35
COL9A3-211ENST00000477612 LY75O60449 1722 aa29.73■■■□□ 2.35
COL9A3-211ENST00000477612 PAPPAQ13219 1627 aa29.72■■■□□ 2.35
COL9A3-211ENST00000477612 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.72■■■□□ 2.35
COL9A3-211ENST00000477612 CASZ1Q86V15 1759 aa29.71■■■□□ 2.35
COL9A3-211ENST00000477612 CYP27B1O15528 508 aa29.7■■■□□ 2.35
COL9A3-211ENST00000477612 IGSF1Q8N6C5 1336 aa29.7■■■□□ 2.34
COL9A3-211ENST00000477612 ITGB4P16144 1822 aa29.69■■■□□ 2.34
COL9A3-211ENST00000477612 NPC1L1Q9UHC9 1359 aa29.68■■■□□ 2.34
COL9A3-211ENST00000477612 NKX1-1Q15270 411 aaPredicted RBP29.67■■■□□ 2.34
COL9A3-211ENST00000477612 SLC15A2Q16348 729 aa29.67■■■□□ 2.34
COL9A3-211ENST00000477612 SPG7Q9UQ90 795 aa29.67■■■□□ 2.34
COL9A3-211ENST00000477612 TOGARAM1Q9Y4F4 1720 aa29.66■■■□□ 2.34
COL9A3-211ENST00000477612 SYTL4Q96C24 671 aaPredicted RBP29.66■■■□□ 2.34
COL9A3-211ENST00000477612 SLC27A3Q5K4L6 730 aa29.65■■■□□ 2.34
COL9A3-211ENST00000477612 LRRC4BQ9NT99 713 aa29.65■■■□□ 2.34
COL9A3-211ENST00000477612 STK32BQ9NY57 414 aa29.65■■■□□ 2.34
COL9A3-211ENST00000477612 QSER1Q2KHR3 1735 aa29.62■■■□□ 2.33
COL9A3-211ENST00000477612 IL13P35225 146 aa29.59■■■□□ 2.33
COL9A3-211ENST00000477612 CC2D1BQ5T0F9 858 aaKnown RBP29.58■■■□□ 2.33
COL9A3-211ENST00000477612 IFNL2Q8IZJ0 200 aa29.58■■■□□ 2.33
COL9A3-211ENST00000477612 SPON1Q9HCB6 807 aa29.58■■■□□ 2.33
COL9A3-211ENST00000477612 PHKG2P15735 406 aa29.57■■■□□ 2.32
COL9A3-211ENST00000477612 MTHFSP49914 203 aa29.57■■■□□ 2.32
COL9A3-211ENST00000477612 PDGFDQ9GZP0 370 aaPredicted RBP29.57■■■□□ 2.32
COL9A3-211ENST00000477612 KDRP35968 1356 aa29.56■■■□□ 2.32
COL9A3-211ENST00000477612 AKT1S1Q96B36 256 aa29.55■■■□□ 2.32
COL9A3-211ENST00000477612 ZNF827Q17R98 1081 aa29.54■■■□□ 2.32
COL9A3-211ENST00000477612 TAF1LQ8IZX4 1826 aa29.54■■■□□ 2.32
COL9A3-211ENST00000477612 MPRIPQ6WCQ1 1025 aa29.53■■■□□ 2.32
COL9A3-211ENST00000477612 TUBGCP6Q96RT7 1819 aa29.52■■■□□ 2.32
COL9A3-211ENST00000477612 AMOTQ4VCS5 1084 aa29.52■■■□□ 2.32
COL9A3-211ENST00000477612 PLEKHO1Q53GL0 409 aaPredicted RBP29.51■■■□□ 2.31
COL9A3-211ENST00000477612 AEBP1Q8IUX7 1158 aa29.5■■■□□ 2.31
COL9A3-211ENST00000477612 PIGBQ92521 554 aa29.5■■■□□ 2.31
COL9A3-211ENST00000477612 CCNL1Q9UK58 526 aaPredicted RBP29.5■■■□□ 2.31
COL9A3-211ENST00000477612 SULT6B1Q6IMI4 303 aa29.49■■■□□ 2.31
COL9A3-211ENST00000477612 C5P01031 1676 aa29.49■■■□□ 2.31
COL9A3-211ENST00000477612 HMGB2P26583 209 aaKnown RBP29.48■■■□□ 2.31
COL9A3-211ENST00000477612 KCNQ4P56696 695 aa29.48■■■□□ 2.31
COL9A3-211ENST00000477612 SMARCC1Q92922 1105 aaPredicted RBP29.48■■■□□ 2.31
COL9A3-211ENST00000477612 PALLDQ8WX93 1383 aa29.48■■■□□ 2.31
COL9A3-211ENST00000477612 ZBTB7AO95365 584 aa29.46■■■□□ 2.31
COL9A3-211ENST00000477612 HSP90AB1P08238 724 aaKnown RBP29.46■■■□□ 2.31
COL9A3-211ENST00000477612 MTFR1LQ9H019 292 aa29.46■■■□□ 2.31
COL9A3-211ENST00000477612 COL24A1Q17RW2 1714 aa29.45■■■□□ 2.31
COL9A3-211ENST00000477612 PTGER2P43116 358 aa29.45■■■□□ 2.31
COL9A3-211ENST00000477612 COL3A1P02461 1466 aaPredicted RBP29.44■■■□□ 2.3
COL9A3-211ENST00000477612 ERVV-2B6SEH9 535 aa29.44■■■□□ 2.3
COL9A3-211ENST00000477612 DIAPH1O60610 1272 aaKnown RBP29.44■■■□□ 2.3
COL9A3-211ENST00000477612 DCAF5Q96JK2 942 aa29.44■■■□□ 2.3
COL9A3-211ENST00000477612 TMOD3Q9NYL9 352 aa29.44■■■□□ 2.3
COL9A3-211ENST00000477612 ZNF530Q6P9A1 599 aaPredicted RBP29.42■■■□□ 2.3
COL9A3-211ENST00000477612 SLC16A10Q8TF71 515 aa29.42■■■□□ 2.3
COL9A3-211ENST00000477612 SGIP1Q9BQI5 828 aa29.42■■■□□ 2.3
COL9A3-211ENST00000477612 PNPLA7Q6ZV29 1317 aa29.42■■■□□ 2.3
COL9A3-211ENST00000477612 ATF5Q9Y2D1 282 aaPredicted RBP29.41■■■□□ 2.3
COL9A3-211ENST00000477612 SCN11AQ9UI33 1791 aa29.41■■■□□ 2.3
COL9A3-211ENST00000477612 KDM6AO15550 1401 aaPredicted RBP29.4■■■□□ 2.3
COL9A3-211ENST00000477612 TFCP2L1Q9NZI6 479 aa29.4■■■□□ 2.3
COL9A3-211ENST00000477612 PPP1R1BQ9UD71 204 aaPredicted RBP29.4■■■□□ 2.3
COL9A3-211ENST00000477612 VIRMAQ69YN4 1812 aaKnown RBP29.4■■■□□ 2.3
COL9A3-211ENST00000477612 ZNF831Q5JPB2 1677 aa29.38■■■□□ 2.29
COL9A3-211ENST00000477612 C4BP0C0L5 1744 aa29.38■■■□□ 2.29
COL9A3-211ENST00000477612 ASAP1Q9ULH1 1129 aa29.37■■■□□ 2.29
COL9A3-211ENST00000477612 CNGB1Q14028 1251 aaPredicted RBP29.36■■■□□ 2.29
COL9A3-211ENST00000477612 C1orf141Q5JVX7 400 aa29.36■■■□□ 2.29
COL9A3-211ENST00000477612 ATG3Q9NT62 314 aa29.36■■■□□ 2.29
COL9A3-211ENST00000477612 LOC102724428A0A0B4J2F2 783 aa29.35■■■□□ 2.29
COL9A3-211ENST00000477612 HMOX1P09601 288 aa29.35■■■□□ 2.29
COL9A3-211ENST00000477612 SIK1P57059 783 aa29.35■■■□□ 2.29
COL9A3-211ENST00000477612 UBR3Q6ZT12 1888 aa29.35■■■□□ 2.29
COL9A3-211ENST00000477612 AKAP4Q5JQC9 854 aa29.33■■■□□ 2.29
COL9A3-211ENST00000477612 ADAMTS7Q9UKP4 1686 aa29.31■■■□□ 2.28
COL9A3-211ENST00000477612 CABP4P57796 275 aa29.31■■■□□ 2.28
COL9A3-211ENST00000477612 PPP2R1AP30153 589 aa29.3■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms