RNA–Protein interactions for RNA: ENST00000476625.5

HDAC6-219, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-219ENST00000476625 MAP3K19Q56UN5 1328 aa17.02■□□□□ 0.32
HDAC6-219ENST00000476625 TOGARAM1Q9Y4F4 1720 aa17.02■□□□□ 0.32
HDAC6-219ENST00000476625 GPR162Q16538 588 aa17.02■□□□□ 0.32
HDAC6-219ENST00000476625 USHBP1Q8N6Y0 703 aa17.02■□□□□ 0.32
HDAC6-219ENST00000476625 TAF1LQ8IZX4 1826 aa17.01■□□□□ 0.31
HDAC6-219ENST00000476625 KIF20BQ96Q89 1820 aa17■□□□□ 0.31
HDAC6-219ENST00000476625 HOXC9P31274 260 aa17■□□□□ 0.31
HDAC6-219ENST00000476625 ANKRD36BQ8N2N9 1353 aa17■□□□□ 0.31
HDAC6-219ENST00000476625 C1QTNF8P60827 252 aa16.99■□□□□ 0.31
HDAC6-219ENST00000476625 TFCP2L1Q9NZI6 479 aa16.99■□□□□ 0.31
HDAC6-219ENST00000476625 ITGB4P16144 1822 aa16.98■□□□□ 0.31
HDAC6-219ENST00000476625 RRS1Q15050 365 aaKnown RBP16.98■□□□□ 0.31
HDAC6-219ENST00000476625 MSL1Q68DK7 614 aa16.98■□□□□ 0.31
HDAC6-219ENST00000476625 TESK2Q96S53 571 aa16.98■□□□□ 0.31
HDAC6-219ENST00000476625 TERF2IPQ9NYB0 399 aa16.98■□□□□ 0.31
HDAC6-219ENST00000476625 YBX3P16989 372 aaKnown RBP eCLIP16.97■□□□□ 0.31
HDAC6-219ENST00000476625 AMPHP49418 695 aa16.96■□□□□ 0.31
HDAC6-219ENST00000476625 SLC27A3Q5K4L6 730 aa16.96■□□□□ 0.31
HDAC6-219ENST00000476625 SMIM5Q71RC9 77 aa16.96■□□□□ 0.31
HDAC6-219ENST00000476625 ST20-MTHFSA0A0A6YYL1 179 aa16.95■□□□□ 0.3
HDAC6-219ENST00000476625 MSH5O43196 834 aa16.95■□□□□ 0.3
HDAC6-219ENST00000476625 POLD1P28340 1107 aa16.95■□□□□ 0.3
HDAC6-219ENST00000476625 NBPF6Q5VWK0 638 aa16.95■□□□□ 0.3
HDAC6-219ENST00000476625 COL23A1Q86Y22 540 aaPredicted RBP16.95■□□□□ 0.3
HDAC6-219ENST00000476625 COG3Q96JB2 828 aa16.95■□□□□ 0.3
HDAC6-219ENST00000476625 NBPF4Q96M43 638 aa16.95■□□□□ 0.3
HDAC6-219ENST00000476625 CCNL1Q9UK58 526 aaPredicted RBP16.95■□□□□ 0.3
HDAC6-219ENST00000476625 TONSLQ96HA7 1378 aa16.94■□□□□ 0.3
HDAC6-219ENST00000476625 ZCRB1Q8TBF4 217 aaKnown RBP16.94■□□□□ 0.3
HDAC6-219ENST00000476625 GGNBP2Q9H3C7 697 aa16.94■□□□□ 0.3
HDAC6-219ENST00000476625 AMIGO3Q86WK7 504 aa16.92■□□□□ 0.3
HDAC6-219ENST00000476625 SLC16A10Q8TF71 515 aa16.92■□□□□ 0.3
HDAC6-219ENST00000476625 WWC3Q9ULE0 1092 aa16.92■□□□□ 0.3
HDAC6-219ENST00000476625 C4BP0C0L5 1744 aa16.92■□□□□ 0.3
HDAC6-219ENST00000476625 UBR3Q6ZT12 1888 aa16.91■□□□□ 0.3
HDAC6-219ENST00000476625 PKD1L3Q7Z443 1732 aa16.91■□□□□ 0.3
HDAC6-219ENST00000476625 USP47Q96K76 1375 aa16.9■□□□□ 0.3
HDAC6-219ENST00000476625 GIGYF1O75420 1035 aaPredicted RBP16.9■□□□□ 0.3
HDAC6-219ENST00000476625 GOLGB1Q14789 3259 aaKnown RBP16.89■□□□□ 0.29
HDAC6-219ENST00000476625 HSP90AB2PQ58FF8 381 aa16.89■□□□□ 0.29
HDAC6-219ENST00000476625 RTL1A6NKG5 1358 aa16.89■□□□□ 0.29
HDAC6-219ENST00000476625 FYB1O15117 783 aa16.88■□□□□ 0.29
HDAC6-219ENST00000476625 MAP2P11137 1827 aaKnown RBP16.88■□□□□ 0.29
HDAC6-219ENST00000476625 PUS7Q96PZ0 661 aaKnown RBP16.87■□□□□ 0.29
HDAC6-219ENST00000476625 PALLDQ8WX93 1383 aa16.87■□□□□ 0.29
HDAC6-219ENST00000476625 MPRIPQ6WCQ1 1025 aa16.86■□□□□ 0.29
HDAC6-219ENST00000476625 ATP10DQ9P241 1426 aa16.86■□□□□ 0.29
HDAC6-219ENST00000476625 ANKRD26Q9UPS8 1709 aa16.85■□□□□ 0.29
HDAC6-219ENST00000476625 CYP27B1O15528 508 aa16.85■□□□□ 0.29
HDAC6-219ENST00000476625 TATP17735 454 aaPredicted RBP16.84■□□□□ 0.29
HDAC6-219ENST00000476625 ZNF526Q8TF50 670 aaPredicted RBP16.84■□□□□ 0.29
HDAC6-219ENST00000476625 RAPGEF4Q8WZA2 1011 aa16.84■□□□□ 0.29
HDAC6-219ENST00000476625 EMILIN1Q9Y6C2 1016 aa16.84■□□□□ 0.29
HDAC6-219ENST00000476625 SMG6Q86US8 1419 aaKnown RBP16.84■□□□□ 0.29
HDAC6-219ENST00000476625 PHF14O94880 888 aa16.83■□□□□ 0.28
HDAC6-219ENST00000476625 KIAA1551Q9HCM1 1747 aa16.83■□□□□ 0.28
HDAC6-219ENST00000476625 INSRP06213 1382 aa16.82■□□□□ 0.28
HDAC6-219ENST00000476625 PCDH11XQ9BZA7 1347 aa16.82■□□□□ 0.28
HDAC6-219ENST00000476625 PCDH11YQ9BZA8 1340 aa16.82■□□□□ 0.28
HDAC6-219ENST00000476625 N4BP2Q86UW6 1770 aaPredicted RBP16.82■□□□□ 0.28
HDAC6-219ENST00000476625 CARD14Q9BXL6 1004 aa16.81■□□□□ 0.28
HDAC6-219ENST00000476625 FLT4P35916 1363 aa16.8■□□□□ 0.28
HDAC6-219ENST00000476625 NSD3Q9BZ95 1437 aa16.79■□□□□ 0.28
HDAC6-219ENST00000476625 LINC00116Q8NCU8 138 aa16.79■□□□□ 0.28
HDAC6-219ENST00000476625 PIGBQ92521 554 aa16.79■□□□□ 0.28
HDAC6-219ENST00000476625 ADCY9O60503 1353 aa16.78■□□□□ 0.28
HDAC6-219ENST00000476625 CGNL1Q0VF96 1302 aa16.77■□□□□ 0.28
HDAC6-219ENST00000476625 IGSF1Q8N6C5 1336 aa16.77■□□□□ 0.28
HDAC6-219ENST00000476625 PPM1GO15355 546 aaPredicted RBP16.77■□□□□ 0.28
HDAC6-219ENST00000476625 GRIN3BO60391 1043 aa16.77■□□□□ 0.28
HDAC6-219ENST00000476625 TMF1P82094 1093 aa16.77■□□□□ 0.28
HDAC6-219ENST00000476625 AK7Q96M32 723 aa16.77■□□□□ 0.28
HDAC6-219ENST00000476625 NCAPD2Q15021 1401 aa16.77■□□□□ 0.27
HDAC6-219ENST00000476625 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.76■□□□□ 0.27
HDAC6-219ENST00000476625 ITPK1Q13572 414 aa16.76■□□□□ 0.27
HDAC6-219ENST00000476625 CD2APQ9Y5K6 639 aa16.76■□□□□ 0.27
HDAC6-219ENST00000476625 ASAP1Q9ULH1 1129 aa16.75■□□□□ 0.27
HDAC6-219ENST00000476625 KIF13BQ9NQT8 1826 aa16.75■□□□□ 0.27
HDAC6-219ENST00000476625 C4AP0C0L4 1744 aa16.74■□□□□ 0.27
HDAC6-219ENST00000476625 COL5A3P25940 1745 aaPredicted RBP16.74■□□□□ 0.27
HDAC6-219ENST00000476625 CICQ96RK0 1608 aaPredicted RBP16.74■□□□□ 0.27
HDAC6-219ENST00000476625 EYA1Q99502 592 aa16.72■□□□□ 0.27
HDAC6-219ENST00000476625 GPBP1L1Q9HC44 474 aaPredicted RBP16.72■□□□□ 0.27
HDAC6-219ENST00000476625 LOC102724428A0A0B4J2F2 783 aa16.71■□□□□ 0.27
HDAC6-219ENST00000476625 SIK1P57059 783 aa16.71■□□□□ 0.27
HDAC6-219ENST00000476625 BRCA1P38398 1863 aaKnown RBP16.71■□□□□ 0.27
HDAC6-219ENST00000476625 PXDNLA1KZ92 1463 aa16.7■□□□□ 0.26
HDAC6-219ENST00000476625 GNPATO15228 680 aa16.7■□□□□ 0.26
HDAC6-219ENST00000476625 NKX1-1Q15270 411 aaPredicted RBP16.7■□□□□ 0.26
HDAC6-219ENST00000476625 FLAD1Q8NFF5 587 aa16.7■□□□□ 0.26
HDAC6-219ENST00000476625 SMARCC1Q92922 1105 aaPredicted RBP16.7■□□□□ 0.26
HDAC6-219ENST00000476625 KIF24Q5T7B8 1368 aa16.69■□□□□ 0.26
HDAC6-219ENST00000476625 TNNT2P45379 298 aaPredicted RBP16.69■□□□□ 0.26
HDAC6-219ENST00000476625 IFFO2Q5TF58 517 aa16.69■□□□□ 0.26
HDAC6-219ENST00000476625 SLC4A9Q96Q91 983 aa16.69■□□□□ 0.26
HDAC6-219ENST00000476625 ATG3Q9NT62 314 aa16.69■□□□□ 0.26
HDAC6-219ENST00000476625 MYH14Q7Z406 1995 aaKnown RBP16.68■□□□□ 0.26
HDAC6-219ENST00000476625 PHKG2P15735 406 aa16.68■□□□□ 0.26
HDAC6-219ENST00000476625 ATP6V1AP38606 617 aa16.68■□□□□ 0.26
HDAC6-219ENST00000476625 TMOD3Q9NYL9 352 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms