RNA–Protein interactions for RNA: ENST00000476045.5

VPS13D-206, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 380 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-206ENST00000476045 LIMD1Q9UGP4 676 aa6.67□□□□□ -1.34
VPS13D-206ENST00000476045 PCDHB15Q9Y5E8 787 aa6.67□□□□□ -1.34
VPS13D-206ENST00000476045 EIF2AK4Q9P2K8 1649 aaKnown RBP6.67□□□□□ -1.34
VPS13D-206ENST00000476045 VPS8Q8N3P4 1428 aa6.67□□□□□ -1.34
VPS13D-206ENST00000476045 CROCC2H7BZ55 1655 aa6.66□□□□□ -1.34
VPS13D-206ENST00000476045 CLTCQ00610 1675 aaKnown RBP6.66□□□□□ -1.34
VPS13D-206ENST00000476045 CFAP99D6REC4 459 aa6.66□□□□□ -1.34
VPS13D-206ENST00000476045 LILRB3O75022 631 aa6.66□□□□□ -1.34
VPS13D-206ENST00000476045 F12P00748 615 aaPredicted RBP6.66□□□□□ -1.34
VPS13D-206ENST00000476045 MYT1Q01538 1121 aa6.66□□□□□ -1.34
VPS13D-206ENST00000476045 LYPD8Q6UX82 237 aa6.66□□□□□ -1.34
VPS13D-206ENST00000476045 EVA1BQ9NVM1 165 aa6.66□□□□□ -1.34
VPS13D-206ENST00000476045 RTEL1-TNFRSF6BF6WH68 1400 aa6.66□□□□□ -1.34
VPS13D-206ENST00000476045 A2MP01023 1474 aa6.66□□□□□ -1.34
VPS13D-206ENST00000476045 CAMSAP2Q08AD1 1489 aa6.66□□□□□ -1.34
VPS13D-206ENST00000476045 MAST1Q9Y2H9 1570 aa6.65□□□□□ -1.34
VPS13D-206ENST00000476045 RNF17Q9BXT8 1623 aaKnown RBP6.65□□□□□ -1.34
VPS13D-206ENST00000476045 STRCQ7RTU9 1775 aa6.65□□□□□ -1.34
VPS13D-206ENST00000476045 PTCRAQ6ISU1 281 aaPredicted RBP6.65□□□□□ -1.34
VPS13D-206ENST00000476045 NCOA2Q15596 1464 aa6.65□□□□□ -1.35
VPS13D-206ENST00000476045 KDM5DQ9BY66 1539 aa6.65□□□□□ -1.35
VPS13D-206ENST00000476045 POLR1AO95602 1720 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-206ENST00000476045 CLK2P49760 499 aaKnown RBP6.64□□□□□ -1.35
VPS13D-206ENST00000476045 SMCPP49901 116 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-206ENST00000476045 PKDCCQ504Y2 493 aa6.64□□□□□ -1.35
VPS13D-206ENST00000476045 SH3D19Q5HYK7 790 aa6.64□□□□□ -1.35
VPS13D-206ENST00000476045 RSPH6AQ9H0K4 717 aa6.64□□□□□ -1.35
VPS13D-206ENST00000476045 KDM4CQ9H3R0 1056 aa6.64□□□□□ -1.35
VPS13D-206ENST00000476045 SPAG9O60271 1321 aaKnown RBP6.64□□□□□ -1.35
VPS13D-206ENST00000476045 IQSEC2Q5JU85 1478 aa6.64□□□□□ -1.35
VPS13D-206ENST00000476045 CEP170BQ9Y4F5 1589 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-206ENST00000476045 FAM187AA6NFU0 413 aa6.63□□□□□ -1.35
VPS13D-206ENST00000476045 KCNH2Q12809 1159 aa6.63□□□□□ -1.35
VPS13D-206ENST00000476045 FOXC1Q12948 553 aa6.63□□□□□ -1.35
VPS13D-206ENST00000476045 PLA2R1Q13018 1463 aa6.63□□□□□ -1.35
VPS13D-206ENST00000476045 QPCTQ16769 361 aa6.63□□□□□ -1.35
VPS13D-206ENST00000476045 DDRGK1Q96HY6 314 aa6.63□□□□□ -1.35
VPS13D-206ENST00000476045 MRGPRX2Q96LB1 330 aa6.63□□□□□ -1.35
VPS13D-206ENST00000476045 MBD5Q9P267 1494 aa6.63□□□□□ -1.35
VPS13D-206ENST00000476045 LRRC9Q6ZRR7 1453 aa6.62□□□□□ -1.35
VPS13D-206ENST00000476045 SHANK2Q9UPX8 1470 aa6.62□□□□□ -1.35
VPS13D-206ENST00000476045 PLEKHG3A1L390 1219 aa6.62□□□□□ -1.35
VPS13D-206ENST00000476045 SIAH2O43255 324 aa6.62□□□□□ -1.35
VPS13D-206ENST00000476045 CTC1Q2NKJ3 1217 aa6.62□□□□□ -1.35
VPS13D-206ENST00000476045 CCDC24Q8N4L8 307 aa6.62□□□□□ -1.35
VPS13D-206ENST00000476045 AFAP1Q8N556 730 aa6.62□□□□□ -1.35
VPS13D-206ENST00000476045 SNIP1Q8TAD8 396 aaKnown RBP6.62□□□□□ -1.35
VPS13D-206ENST00000476045 CABLES1Q8TDN4 633 aa6.62□□□□□ -1.35
VPS13D-206ENST00000476045 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.62□□□□□ -1.35
VPS13D-206ENST00000476045 UNC93B1Q9H1C4 597 aa6.62□□□□□ -1.35
VPS13D-206ENST00000476045 ESF1Q9H501 851 aaKnown RBP6.62□□□□□ -1.35
VPS13D-206ENST00000476045 GPBP1L1Q9HC44 474 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-206ENST00000476045 CFDP1Q9UEE9 299 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-206ENST00000476045 PTPRTO14522 1441 aa6.61□□□□□ -1.35
VPS13D-206ENST00000476045 NCOA1Q15788 1441 aa6.61□□□□□ -1.35
VPS13D-206ENST00000476045 SMPD1P17405 629 aa6.61□□□□□ -1.35
VPS13D-206ENST00000476045 RC3H1Q5TC82 1133 aaKnown RBP6.61□□□□□ -1.35
VPS13D-206ENST00000476045 CYP4X1Q8N118 509 aa6.61□□□□□ -1.35
VPS13D-206ENST00000476045 MPNDQ8N594 471 aa6.61□□□□□ -1.35
VPS13D-206ENST00000476045 PZPP20742 1482 aa6.6□□□□□ -1.35
VPS13D-206ENST00000476045 MIA2Q96PC5 1412 aa6.6□□□□□ -1.35
VPS13D-206ENST00000476045 SH3BP2P78314 561 aa6.6□□□□□ -1.35
VPS13D-206ENST00000476045 MLECQ14165 292 aa6.6□□□□□ -1.35
VPS13D-206ENST00000476045 SKIV2LQ15477 1246 aaKnown RBP6.6□□□□□ -1.35
VPS13D-206ENST00000476045 PPP2R2DQ66LE6 453 aa6.6□□□□□ -1.35
VPS13D-206ENST00000476045 FBXO41Q8TF61 875 aa6.6□□□□□ -1.35
VPS13D-206ENST00000476045 AAASQ9NRG9 546 aa6.6□□□□□ -1.35
VPS13D-206ENST00000476045 CAMSAP1Q5T5Y3 1602 aa6.6□□□□□ -1.35
VPS13D-206ENST00000476045 PRDM15P57071 1507 aaPredicted RBP6.6□□□□□ -1.35
VPS13D-206ENST00000476045 MYOM3Q5VTT5 1437 aa6.59□□□□□ -1.35
VPS13D-206ENST00000476045 DEPDC5O75140 1603 aa6.59□□□□□ -1.35
VPS13D-206ENST00000476045 DNMT1P26358 1616 aaKnown RBP6.59□□□□□ -1.35
VPS13D-206ENST00000476045 ZNF511Q8NB15 262 aa6.59□□□□□ -1.35
VPS13D-206ENST00000476045 FAM117AQ9C073 453 aa6.59□□□□□ -1.35
VPS13D-206ENST00000476045 GOPCQ9HD26 462 aa6.59□□□□□ -1.35
VPS13D-206ENST00000476045 A2ML1A8K2U0 1454 aa6.59□□□□□ -1.36
VPS13D-206ENST00000476045 PTPN23Q9H3S7 1636 aa6.58□□□□□ -1.36
VPS13D-206ENST00000476045 PER1O15534 1290 aaPredicted RBP6.58□□□□□ -1.36
VPS13D-206ENST00000476045 RTL5Q5HYW3 569 aaPredicted RBP6.58□□□□□ -1.36
VPS13D-206ENST00000476045 ZNF777Q9ULD5 760 aaPredicted RBP6.58□□□□□ -1.36
VPS13D-206ENST00000476045 DUOX2Q9NRD8 1548 aa6.58□□□□□ -1.36
VPS13D-206ENST00000476045 TCOF1Q13428 1488 aaKnown RBP6.58□□□□□ -1.36
VPS13D-206ENST00000476045 NLRP1Q9C000 1473 aa6.58□□□□□ -1.36
VPS13D-206ENST00000476045 KDM5AP29375 1690 aaKnown RBP6.58□□□□□ -1.36
VPS13D-206ENST00000476045 PTPRKQ15262 1439 aa6.58□□□□□ -1.36
VPS13D-206ENST00000476045 DHX29Q7Z478 1369 aaKnown RBP6.57□□□□□ -1.36
VPS13D-206ENST00000476045 SYNMO15061 1565 aa6.57□□□□□ -1.36
VPS13D-206ENST00000476045 CEP152O94986 1710 aa6.57□□□□□ -1.36
VPS13D-206ENST00000476045 TPRNQ4KMQ1 711 aa6.57□□□□□ -1.36
VPS13D-206ENST00000476045 FBXO31Q5XUX0 539 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-206ENST00000476045 MAP10Q9P2G4 905 aa6.57□□□□□ -1.36
VPS13D-206ENST00000476045 ERBINQ96RT1 1412 aa6.57□□□□□ -1.36
VPS13D-206ENST00000476045 MROH1Q8NDA8 1641 aa6.57□□□□□ -1.36
VPS13D-206ENST00000476045 SPATA31D1Q6ZQQ2 1576 aa6.57□□□□□ -1.36
VPS13D-206ENST00000476045 ABCC3O15438 1527 aa6.56□□□□□ -1.36
VPS13D-206ENST00000476045 TTC24A2A3L6 582 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-206ENST00000476045 J3QL48 77 aa6.56□□□□□ -1.36
VPS13D-206ENST00000476045 ST8SIA5O15466 376 aa6.56□□□□□ -1.36
VPS13D-206ENST00000476045 CSPP1Q1MSJ5 1256 aa6.56□□□□□ -1.36
VPS13D-206ENST00000476045 HELBQ8NG08 1087 aaPredicted RBP6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms