RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 BTAF1O14981 1849 aa20.83■□□□□ 0.92
VARS-223ENST00000474643 INSRP06213 1382 aa20.82■□□□□ 0.92
VARS-223ENST00000474643 KIF24Q5T7B8 1368 aa20.82■□□□□ 0.92
VARS-223ENST00000474643 HSP90AB2PQ58FF8 381 aa20.81■□□□□ 0.92
VARS-223ENST00000474643 NBPF6Q5VWK0 638 aa20.81■□□□□ 0.92
VARS-223ENST00000474643 NBPF4Q96M43 638 aa20.81■□□□□ 0.92
VARS-223ENST00000474643 MEGF6O75095 1541 aa20.8■□□□□ 0.92
VARS-223ENST00000474643 CARD14Q9BXL6 1004 aa20.8■□□□□ 0.92
VARS-223ENST00000474643 RGPD2P0DJD1 1756 aa20.8■□□□□ 0.92
VARS-223ENST00000474643 PRIM1P49642 420 aaKnown RBP20.79■□□□□ 0.92
VARS-223ENST00000474643 ATF5Q9Y2D1 282 aaPredicted RBP20.79■□□□□ 0.92
VARS-223ENST00000474643 ZEB1P37275 1124 aaPredicted RBP20.78■□□□□ 0.92
VARS-223ENST00000474643 EMILIN1Q9Y6C2 1016 aa20.78■□□□□ 0.92
VARS-223ENST00000474643 PCDH11XQ9BZA7 1347 aa20.78■□□□□ 0.92
VARS-223ENST00000474643 PCDH11YQ9BZA8 1340 aa20.78■□□□□ 0.92
VARS-223ENST00000474643 SLC27A3Q5K4L6 730 aa20.77■□□□□ 0.92
VARS-223ENST00000474643 DOT1LQ8TEK3 1739 aa20.76■□□□□ 0.91
VARS-223ENST00000474643 TNNT2P45379 298 aaPredicted RBP20.76■□□□□ 0.91
VARS-223ENST00000474643 PDGFDQ9GZP0 370 aaPredicted RBP20.76■□□□□ 0.91
VARS-223ENST00000474643 MTFR1LQ9H019 292 aa20.76■□□□□ 0.91
VARS-223ENST00000474643 CASZ1Q86V15 1759 aa20.76■□□□□ 0.91
VARS-223ENST00000474643 TFCP2L1Q9NZI6 479 aa20.73■□□□□ 0.91
VARS-223ENST00000474643 CCNL1Q9UK58 526 aaPredicted RBP20.72■□□□□ 0.91
VARS-223ENST00000474643 ZNF827Q17R98 1081 aa20.71■□□□□ 0.91
VARS-223ENST00000474643 LRRC4BQ9NT99 713 aa20.71■□□□□ 0.91
VARS-223ENST00000474643 MSH5O43196 834 aa20.7■□□□□ 0.9
VARS-223ENST00000474643 SPG7Q9UQ90 795 aa20.7■□□□□ 0.9
VARS-223ENST00000474643 SHANK3Q9BYB0 1731 aa20.7■□□□□ 0.9
VARS-223ENST00000474643 PAPPAQ13219 1627 aa20.69■□□□□ 0.9
VARS-223ENST00000474643 PANK3Q9H999 370 aa20.69■□□□□ 0.9
VARS-223ENST00000474643 WASHC2AQ641Q2 1341 aa20.69■□□□□ 0.9
VARS-223ENST00000474643 HMGB2P26583 209 aaKnown RBP20.68■□□□□ 0.9
VARS-223ENST00000474643 POLD1P28340 1107 aa20.68■□□□□ 0.9
VARS-223ENST00000474643 PTGER2P43116 358 aa20.68■□□□□ 0.9
VARS-223ENST00000474643 KCNQ4P56696 695 aa20.68■□□□□ 0.9
VARS-223ENST00000474643 MPRIPQ6WCQ1 1025 aa20.68■□□□□ 0.9
VARS-223ENST00000474643 KLHL34Q8N239 644 aa20.67■□□□□ 0.9
VARS-223ENST00000474643 YY1P25490 414 aa20.66■□□□□ 0.9
VARS-223ENST00000474643 POLKQ9UBT6 870 aa20.66■□□□□ 0.9
VARS-223ENST00000474643 KNSTRNQ9Y448 316 aa20.66■□□□□ 0.9
VARS-223ENST00000474643 NSD2O96028 1365 aa20.66■□□□□ 0.9
VARS-223ENST00000474643 ANKRD26Q9UPS8 1709 aa20.65■□□□□ 0.9
VARS-223ENST00000474643 MORC1Q86VD1 984 aa20.65■□□□□ 0.9
VARS-223ENST00000474643 AKT1S1Q96B36 256 aa20.65■□□□□ 0.9
VARS-223ENST00000474643 ARXQ96QS3 562 aa20.65■□□□□ 0.9
VARS-223ENST00000474643 FHDC1Q9C0D6 1143 aaPredicted RBP20.65■□□□□ 0.9
VARS-223ENST00000474643 MAP2P11137 1827 aaKnown RBP20.64■□□□□ 0.9
VARS-223ENST00000474643 SLC16A10Q8TF71 515 aa20.64■□□□□ 0.89
VARS-223ENST00000474643 PALLDQ8WX93 1383 aa20.63■□□□□ 0.89
VARS-223ENST00000474643 CYP27B1O15528 508 aa20.63■□□□□ 0.89
VARS-223ENST00000474643 SMARCC1Q92922 1105 aaPredicted RBP20.63■□□□□ 0.89
VARS-223ENST00000474643 EYA1Q99502 592 aa20.63■□□□□ 0.89
VARS-223ENST00000474643 LY75O60449 1722 aa20.61■□□□□ 0.89
VARS-223ENST00000474643 PNPLA7Q6ZV29 1317 aa20.61■□□□□ 0.89
VARS-223ENST00000474643 EIF4A2Q14240 407 aaKnown RBP20.61■□□□□ 0.89
VARS-223ENST00000474643 SYT17Q9BSW7 474 aa20.6■□□□□ 0.89
VARS-223ENST00000474643 TMOD3Q9NYL9 352 aa20.6■□□□□ 0.89
VARS-223ENST00000474643 PKD1L3Q7Z443 1732 aa20.6■□□□□ 0.89
VARS-223ENST00000474643 KIF7Q2M1P5 1343 aa20.59■□□□□ 0.89
VARS-223ENST00000474643 IFNL2Q8IZJ0 200 aa20.59■□□□□ 0.89
VARS-223ENST00000474643 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.59■□□□□ 0.89
VARS-223ENST00000474643 AK7Q96M32 723 aa20.58■□□□□ 0.89
VARS-223ENST00000474643 QSER1Q2KHR3 1735 aa20.58■□□□□ 0.88
VARS-223ENST00000474643 NCAPD2Q15021 1401 aa20.57■□□□□ 0.88
VARS-223ENST00000474643 PELP1Q8IZL8 1130 aaKnown RBP20.56■□□□□ 0.88
VARS-223ENST00000474643 FLAD1Q8NFF5 587 aa20.56■□□□□ 0.88
VARS-223ENST00000474643 SGIP1Q9BQI5 828 aa20.56■□□□□ 0.88
VARS-223ENST00000474643 C5P01031 1676 aa20.55■□□□□ 0.88
VARS-223ENST00000474643 PHKG2P15735 406 aa20.55■□□□□ 0.88
VARS-223ENST00000474643 PIGBQ92521 554 aa20.55■□□□□ 0.88
VARS-223ENST00000474643 TOGARAM1Q9Y4F4 1720 aa20.54■□□□□ 0.88
VARS-223ENST00000474643 PLEKHO1Q53GL0 409 aaPredicted RBP20.54■□□□□ 0.88
VARS-223ENST00000474643 TUBGCP6Q96RT7 1819 aa20.53■□□□□ 0.88
VARS-223ENST00000474643 HSP90AB1P08238 724 aaKnown RBP20.53■□□□□ 0.88
VARS-223ENST00000474643 NKX1-1Q15270 411 aaPredicted RBP20.53■□□□□ 0.88
VARS-223ENST00000474643 GPR162Q16538 588 aa20.53■□□□□ 0.88
VARS-223ENST00000474643 ITGB4P16144 1822 aa20.53■□□□□ 0.88
VARS-223ENST00000474643 IGSF1Q8N6C5 1336 aa20.53■□□□□ 0.88
VARS-223ENST00000474643 C1orf141Q5JVX7 400 aa20.52■□□□□ 0.88
VARS-223ENST00000474643 MSL1Q68DK7 614 aa20.52■□□□□ 0.88
VARS-223ENST00000474643 MAP3K5Q99683 1374 aa20.51■□□□□ 0.87
VARS-223ENST00000474643 PHF14O94880 888 aa20.51■□□□□ 0.87
VARS-223ENST00000474643 ZNF530Q6P9A1 599 aaPredicted RBP20.51■□□□□ 0.87
VARS-223ENST00000474643 COL23A1Q86Y22 540 aaPredicted RBP20.51■□□□□ 0.87
VARS-223ENST00000474643 PLEKHG2Q9H7P9 1386 aa20.5■□□□□ 0.87
VARS-223ENST00000474643 LOC102724428A0A0B4J2F2 783 aa20.5■□□□□ 0.87
VARS-223ENST00000474643 SIK1P57059 783 aa20.5■□□□□ 0.87
VARS-223ENST00000474643 AMOTQ4VCS5 1084 aa20.5■□□□□ 0.87
VARS-223ENST00000474643 ATP6V1AP38606 617 aa20.49■□□□□ 0.87
VARS-223ENST00000474643 CNGB1Q14028 1251 aaPredicted RBP20.49■□□□□ 0.87
VARS-223ENST00000474643 SULT6B1Q6IMI4 303 aa20.48■□□□□ 0.87
VARS-223ENST00000474643 DCAF5Q96JK2 942 aa20.48■□□□□ 0.87
VARS-223ENST00000474643 ASAP1Q9ULH1 1129 aa20.48■□□□□ 0.87
VARS-223ENST00000474643 UTRNP46939 3433 aa20.47■□□□□ 0.87
VARS-223ENST00000474643 C4BP0C0L5 1744 aa20.47■□□□□ 0.87
VARS-223ENST00000474643 CABP4P57796 275 aa20.47■□□□□ 0.87
VARS-223ENST00000474643 RBM42Q9BTD8 480 aaKnown RBP20.47■□□□□ 0.87
VARS-223ENST00000474643 ERVV-2B6SEH9 535 aa20.46■□□□□ 0.87
VARS-223ENST00000474643 CC2D1BQ5T0F9 858 aaKnown RBP20.46■□□□□ 0.87
VARS-223ENST00000474643 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms