RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 USP19O94966 1318 aa12.51□□□□□ -0.41
USP39-214ENST00000474572 LMTK3Q96Q04 1460 aa12.51□□□□□ -0.41
USP39-214ENST00000474572 MTHFSDQ2M296 383 aaKnown RBP12.5□□□□□ -0.41
USP39-214ENST00000474572 KCNH5Q8NCM2 988 aa12.5□□□□□ -0.41
USP39-214ENST00000474572 IP6K1Q92551 441 aa12.5□□□□□ -0.41
USP39-214ENST00000474572 MSH6P52701 1360 aa12.5□□□□□ -0.41
USP39-214ENST00000474572 RGS12O14924 1447 aa12.5□□□□□ -0.41
USP39-214ENST00000474572 CRYBG1Q9Y4K1 1723 aa12.5□□□□□ -0.41
USP39-214ENST00000474572 XIRP1Q702N8 1843 aaKnown RBP12.5□□□□□ -0.41
USP39-214ENST00000474572 KDM3BQ7LBC6 1761 aa12.49□□□□□ -0.41
USP39-214ENST00000474572 SOX12O15370 315 aa12.49□□□□□ -0.41
USP39-214ENST00000474572 ITPRIPQ8IWB1 547 aa12.49□□□□□ -0.41
USP39-214ENST00000474572 SMC5Q8IY18 1101 aa12.49□□□□□ -0.41
USP39-214ENST00000474572 CHMP4BQ9H444 224 aaKnown RBP12.49□□□□□ -0.41
USP39-214ENST00000474572 CACNA1FO60840 1977 aa12.49□□□□□ -0.41
USP39-214ENST00000474572 ADAMTS7Q9UKP4 1686 aa12.48□□□□□ -0.41
USP39-214ENST00000474572 ESCO1Q5FWF5 840 aa12.48□□□□□ -0.41
USP39-214ENST00000474572 MCM10Q7L590 875 aa12.48□□□□□ -0.41
USP39-214ENST00000474572 API5Q9BZZ5 524 aaKnown RBP12.48□□□□□ -0.41
USP39-214ENST00000474572 PDZRN3Q9UPQ7 1066 aa12.48□□□□□ -0.41
USP39-214ENST00000474572 ABCC6O95255 1503 aa12.47□□□□□ -0.41
USP39-214ENST00000474572 MAP3K5Q99683 1374 aa12.47□□□□□ -0.41
USP39-214ENST00000474572 ZBTB7BO15156 539 aaPredicted RBP12.47□□□□□ -0.41
USP39-214ENST00000474572 PAK3O75914 559 aaPredicted RBP12.47□□□□□ -0.41
USP39-214ENST00000474572 RGS3P49796 1198 aa12.47□□□□□ -0.41
USP39-214ENST00000474572 RBM33Q96EV2 1170 aaKnown RBP12.47□□□□□ -0.41
USP39-214ENST00000474572 BABAM1Q9NWV8 329 aa12.47□□□□□ -0.41
USP39-214ENST00000474572 NOP58Q9Y2X3 529 aaKnown RBP12.47□□□□□ -0.41
USP39-214ENST00000474572 SOS1Q07889 1333 aaPredicted RBP12.46□□□□□ -0.41
USP39-214ENST00000474572 PSME1Q06323 249 aa12.46□□□□□ -0.41
USP39-214ENST00000474572 NUTM2GQ5VZR2 741 aa12.46□□□□□ -0.41
USP39-214ENST00000474572 ORAI2Q96SN7 254 aa12.46□□□□□ -0.41
USP39-214ENST00000474572 C19orf44Q9H6X5 657 aa12.46□□□□□ -0.41
USP39-214ENST00000474572 COL18A1P39060 1754 aa12.46□□□□□ -0.42
USP39-214ENST00000474572 FOXO3O43524 673 aa12.45□□□□□ -0.42
USP39-214ENST00000474572 PROSER2Q86WR7 435 aaPredicted RBP12.45□□□□□ -0.42
USP39-214ENST00000474572 STRCQ7RTU9 1775 aa12.45□□□□□ -0.42
USP39-214ENST00000474572 OVOS2A0A0G2JMS6 1433 aa12.45□□□□□ -0.42
USP39-214ENST00000474572 CEMIPQ8WUJ3 1361 aa12.44□□□□□ -0.42
USP39-214ENST00000474572 PTPRCP08575 1304 aa12.44□□□□□ -0.42
USP39-214ENST00000474572 SIPA1L3O60292 1781 aaPredicted RBP12.44□□□□□ -0.42
USP39-214ENST00000474572 RGPD5Q99666 1765 aa12.44□□□□□ -0.42
USP39-214ENST00000474572 INTS3Q68E01 1043 aaKnown RBP12.44□□□□□ -0.42
USP39-214ENST00000474572 ARHGEF25Q86VW2 580 aa12.44□□□□□ -0.42
USP39-214ENST00000474572 RTF1Q92541 710 aaKnown RBP12.44□□□□□ -0.42
USP39-214ENST00000474572 GNAT3A8MTJ3 354 aa12.43□□□□□ -0.42
USP39-214ENST00000474572 ELL2O00472 640 aaPredicted RBP12.43□□□□□ -0.42
USP39-214ENST00000474572 TMEM94Q12767 1356 aa12.43□□□□□ -0.42
USP39-214ENST00000474572 GCP02774 474 aa12.42□□□□□ -0.42
USP39-214ENST00000474572 KRT24Q2M2I5 525 aa12.42□□□□□ -0.42
USP39-214ENST00000474572 C14orf37Q86TY3 774 aa12.42□□□□□ -0.42
USP39-214ENST00000474572 DDRGK1Q96HY6 314 aa12.42□□□□□ -0.42
USP39-214ENST00000474572 PLEKHG2Q9H7P9 1386 aa12.42□□□□□ -0.42
USP39-214ENST00000474572 PXDNQ92626 1479 aa12.41□□□□□ -0.42
USP39-214ENST00000474572 MYT1Q01538 1121 aa12.41□□□□□ -0.42
USP39-214ENST00000474572 NBPF6Q5VWK0 638 aa12.41□□□□□ -0.42
USP39-214ENST00000474572 ERICH6Q7L0X2 663 aa12.41□□□□□ -0.42
USP39-214ENST00000474572 KRT28Q7Z3Y7 464 aa12.41□□□□□ -0.42
USP39-214ENST00000474572 NBPF4Q96M43 638 aa12.41□□□□□ -0.42
USP39-214ENST00000474572 ATP10DQ9P241 1426 aa12.41□□□□□ -0.42
USP39-214ENST00000474572 TSPYL4Q9UJ04 414 aa12.41□□□□□ -0.42
USP39-214ENST00000474572 PXDNLA1KZ92 1463 aa12.4□□□□□ -0.42
USP39-214ENST00000474572 IL17REQ8NFR9 667 aa12.4□□□□□ -0.42
USP39-214ENST00000474572 GCC1Q96CN9 775 aa12.4□□□□□ -0.42
USP39-214ENST00000474572 ZBTB47Q9UFB7 747 aaPredicted RBP12.4□□□□□ -0.42
USP39-214ENST00000474572 TNS3Q68CZ2 1445 aa12.39□□□□□ -0.43
USP39-214ENST00000474572 NUCB1Q02818 461 aa12.39□□□□□ -0.43
USP39-214ENST00000474572 PKD1L3Q7Z443 1732 aa12.38□□□□□ -0.43
USP39-214ENST00000474572 TAF7Q15545 349 aaPredicted RBP12.38□□□□□ -0.43
USP39-214ENST00000474572 NPM2Q86SE8 214 aaKnown RBP12.38□□□□□ -0.43
USP39-214ENST00000474572 SIRT2Q8IXJ6 389 aa12.38□□□□□ -0.43
USP39-214ENST00000474572 LTV1Q96GA3 475 aaPredicted RBP12.38□□□□□ -0.43
USP39-214ENST00000474572 CADPS2Q86UW7 1296 aa12.37□□□□□ -0.43
USP39-214ENST00000474572 USHBP1Q8N6Y0 703 aa12.37□□□□□ -0.43
USP39-214ENST00000474572 SCN11AQ9UI33 1791 aa12.37□□□□□ -0.43
USP39-214ENST00000474572 ATF3P18847 181 aa12.36□□□□□ -0.43
USP39-214ENST00000474572 AMOTQ4VCS5 1084 aa12.36□□□□□ -0.43
USP39-214ENST00000474572 AKAP4Q5JQC9 854 aa12.36□□□□□ -0.43
USP39-214ENST00000474572 ABCA3Q99758 1704 aa12.36□□□□□ -0.43
USP39-214ENST00000474572 NPHP3Q7Z494 1330 aa12.36□□□□□ -0.43
USP39-214ENST00000474572 PARP4Q9UKK3 1724 aaKnown RBP12.35□□□□□ -0.43
USP39-214ENST00000474572 HOXB7P09629 217 aa12.35□□□□□ -0.43
USP39-214ENST00000474572 XPCQ01831 940 aaPredicted RBP12.35□□□□□ -0.43
USP39-214ENST00000474572 PLEKHO1Q53GL0 409 aaPredicted RBP12.35□□□□□ -0.43
USP39-214ENST00000474572 CHD1LQ86WJ1 897 aa12.35□□□□□ -0.43
USP39-214ENST00000474572 ANKRD44Q8N8A2 993 aa12.35□□□□□ -0.43
USP39-214ENST00000474572 ANKRD24Q8TF21 1146 aa12.35□□□□□ -0.43
USP39-214ENST00000474572 MIS18AQ9NYP9 233 aa12.35□□□□□ -0.43
USP39-214ENST00000474572 ERBB3P21860 1342 aa12.35□□□□□ -0.43
USP39-214ENST00000474572 CPDO75976 1380 aa12.34□□□□□ -0.43
USP39-214ENST00000474572 SEC24BO95487 1268 aa12.34□□□□□ -0.43
USP39-214ENST00000474572 SLC4A2P04920 1241 aa12.34□□□□□ -0.43
USP39-214ENST00000474572 CCDC30Q5VVM6 783 aa12.34□□□□□ -0.43
USP39-214ENST00000474572 G2E3Q7L622 706 aa12.34□□□□□ -0.43
USP39-214ENST00000474572 RPAP2Q8IXW5 612 aaPredicted RBP12.34□□□□□ -0.43
USP39-214ENST00000474572 LRRC59Q96AG4 307 aaKnown RBP12.34□□□□□ -0.43
USP39-214ENST00000474572 NHSL1Q5SYE7 1610 aa12.33□□□□□ -0.43
USP39-214ENST00000474572 HEG1Q9ULI3 1381 aa12.33□□□□□ -0.44
USP39-214ENST00000474572 CCT4P50991 539 aaKnown RBP12.33□□□□□ -0.44
USP39-214ENST00000474572 DCTPP1Q9H773 170 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 1500.8 ms