RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 LRP5O75197 1615 aa24.67■■□□□ 1.54
UPF3A-203ENST00000474056 NSD2O96028 1365 aa24.67■■□□□ 1.54
UPF3A-203ENST00000474056 TNNT2P45379 298 aaPredicted RBP24.66■■□□□ 1.54
UPF3A-203ENST00000474056 DDX54Q8TDD1 881 aaKnown RBP24.66■■□□□ 1.54
UPF3A-203ENST00000474056 POLKQ9UBT6 870 aa24.66■■□□□ 1.54
UPF3A-203ENST00000474056 WASHC2AQ641Q2 1341 aa24.64■■□□□ 1.54
UPF3A-203ENST00000474056 NCAPD2Q15021 1401 aa24.62■■□□□ 1.53
UPF3A-203ENST00000474056 ZCRB1Q8TBF4 217 aaKnown RBP24.62■■□□□ 1.53
UPF3A-203ENST00000474056 PKD1L3Q7Z443 1732 aa24.61■■□□□ 1.53
UPF3A-203ENST00000474056 PROM2Q8N271 834 aa24.61■■□□□ 1.53
UPF3A-203ENST00000474056 RAPGEF4Q8WZA2 1011 aa24.61■■□□□ 1.53
UPF3A-203ENST00000474056 KNSTRNQ9Y448 316 aa24.61■■□□□ 1.53
UPF3A-203ENST00000474056 NBPF14Q5TI25 921 aa24.6■■□□□ 1.53
UPF3A-203ENST00000474056 TATP17735 454 aaPredicted RBP24.59■■□□□ 1.53
UPF3A-203ENST00000474056 TXNRD1Q16881 649 aa24.57■■□□□ 1.52
UPF3A-203ENST00000474056 MORC1Q86VD1 984 aa24.57■■□□□ 1.52
UPF3A-203ENST00000474056 ANO8Q9HCE9 1232 aaPredicted RBP24.57■■□□□ 1.52
UPF3A-203ENST00000474056 AMER1Q5JTC6 1135 aaPredicted RBP24.56■■□□□ 1.52
UPF3A-203ENST00000474056 EYA1Q99502 592 aa24.56■■□□□ 1.52
UPF3A-203ENST00000474056 EIF4A2Q14240 407 aaKnown RBP24.55■■□□□ 1.52
UPF3A-203ENST00000474056 TOGARAM1Q9Y4F4 1720 aa24.54■■□□□ 1.52
UPF3A-203ENST00000474056 PAPPAQ13219 1627 aa24.53■■□□□ 1.52
UPF3A-203ENST00000474056 LY75O60449 1722 aa24.53■■□□□ 1.52
UPF3A-203ENST00000474056 CASZ1Q86V15 1759 aa24.53■■□□□ 1.52
UPF3A-203ENST00000474056 ITGB4P16144 1822 aa24.53■■□□□ 1.52
UPF3A-203ENST00000474056 PCDH11XQ9BZA7 1347 aa24.53■■□□□ 1.52
UPF3A-203ENST00000474056 PCDH11YQ9BZA8 1340 aa24.53■■□□□ 1.52
UPF3A-203ENST00000474056 PER1O15534 1290 aaPredicted RBP24.52■■□□□ 1.52
UPF3A-203ENST00000474056 SYTL4Q96C24 671 aaPredicted RBP24.52■■□□□ 1.52
UPF3A-203ENST00000474056 PRIM1P49642 420 aaKnown RBP24.51■■□□□ 1.51
UPF3A-203ENST00000474056 CYP27B1O15528 508 aa24.49■■□□□ 1.51
UPF3A-203ENST00000474056 IGSF1Q8N6C5 1336 aa24.47■■□□□ 1.51
UPF3A-203ENST00000474056 CC2D1BQ5T0F9 858 aaKnown RBP24.45■■□□□ 1.5
UPF3A-203ENST00000474056 LRRC4BQ9NT99 713 aa24.45■■□□□ 1.5
UPF3A-203ENST00000474056 STK32BQ9NY57 414 aa24.45■■□□□ 1.5
UPF3A-203ENST00000474056 TUBGCP6Q96RT7 1819 aa24.45■■□□□ 1.5
UPF3A-203ENST00000474056 SLC15A2Q16348 729 aa24.44■■□□□ 1.5
UPF3A-203ENST00000474056 SPG7Q9UQ90 795 aa24.43■■□□□ 1.5
UPF3A-203ENST00000474056 PDGFDQ9GZP0 370 aaPredicted RBP24.42■■□□□ 1.5
UPF3A-203ENST00000474056 QSER1Q2KHR3 1735 aa24.41■■□□□ 1.5
UPF3A-203ENST00000474056 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.41■■□□□ 1.5
UPF3A-203ENST00000474056 NPC1L1Q9UHC9 1359 aa24.41■■□□□ 1.5
UPF3A-203ENST00000474056 PLEKHG2Q9H7P9 1386 aa24.4■■□□□ 1.5
UPF3A-203ENST00000474056 TAF1LQ8IZX4 1826 aa24.4■■□□□ 1.5
UPF3A-203ENST00000474056 KCNQ4P56696 695 aa24.39■■□□□ 1.49
UPF3A-203ENST00000474056 CNGB1Q14028 1251 aaPredicted RBP24.39■■□□□ 1.49
UPF3A-203ENST00000474056 NKX1-1Q15270 411 aaPredicted RBP24.39■■□□□ 1.49
UPF3A-203ENST00000474056 ZNF827Q17R98 1081 aa24.39■■□□□ 1.49
UPF3A-203ENST00000474056 SLC27A3Q5K4L6 730 aa24.39■■□□□ 1.49
UPF3A-203ENST00000474056 IL13P35225 146 aa24.38■■□□□ 1.49
UPF3A-203ENST00000474056 MTHFSP49914 203 aa24.38■■□□□ 1.49
UPF3A-203ENST00000474056 AEBP1Q8IUX7 1158 aa24.38■■□□□ 1.49
UPF3A-203ENST00000474056 C5P01031 1676 aa24.37■■□□□ 1.49
UPF3A-203ENST00000474056 PHKG2P15735 406 aa24.37■■□□□ 1.49
UPF3A-203ENST00000474056 MPRIPQ6WCQ1 1025 aa24.37■■□□□ 1.49
UPF3A-203ENST00000474056 SPON1Q9HCB6 807 aa24.37■■□□□ 1.49
UPF3A-203ENST00000474056 IFNL2Q8IZJ0 200 aa24.36■■□□□ 1.49
UPF3A-203ENST00000474056 KDRP35968 1356 aa24.34■■□□□ 1.49
UPF3A-203ENST00000474056 VIRMAQ69YN4 1812 aaKnown RBP24.34■■□□□ 1.49
UPF3A-203ENST00000474056 ZBTB7AO95365 584 aa24.34■■□□□ 1.49
UPF3A-203ENST00000474056 SULT6B1Q6IMI4 303 aa24.34■■□□□ 1.49
UPF3A-203ENST00000474056 AKT1S1Q96B36 256 aa24.34■■□□□ 1.49
UPF3A-203ENST00000474056 CCNL1Q9UK58 526 aaPredicted RBP24.34■■□□□ 1.49
UPF3A-203ENST00000474056 PALLDQ8WX93 1383 aa24.33■■□□□ 1.49
UPF3A-203ENST00000474056 PIGBQ92521 554 aa24.32■■□□□ 1.48
UPF3A-203ENST00000474056 PLEKHO1Q53GL0 409 aaPredicted RBP24.31■■□□□ 1.48
UPF3A-203ENST00000474056 COL3A1P02461 1466 aaPredicted RBP24.31■■□□□ 1.48
UPF3A-203ENST00000474056 ZNF530Q6P9A1 599 aaPredicted RBP24.29■■□□□ 1.48
UPF3A-203ENST00000474056 ATF5Q9Y2D1 282 aaPredicted RBP24.29■■□□□ 1.48
UPF3A-203ENST00000474056 SCN11AQ9UI33 1791 aa24.29■■□□□ 1.48
UPF3A-203ENST00000474056 AMOTQ4VCS5 1084 aa24.28■■□□□ 1.48
UPF3A-203ENST00000474056 TMOD3Q9NYL9 352 aa24.28■■□□□ 1.48
UPF3A-203ENST00000474056 KDM6AO15550 1401 aaPredicted RBP24.27■■□□□ 1.48
UPF3A-203ENST00000474056 DIAPH1O60610 1272 aaKnown RBP24.27■■□□□ 1.48
UPF3A-203ENST00000474056 PPP1R1BQ9UD71 204 aaPredicted RBP24.27■■□□□ 1.48
UPF3A-203ENST00000474056 PNPLA7Q6ZV29 1317 aa24.27■■□□□ 1.48
UPF3A-203ENST00000474056 C4BP0C0L5 1744 aa24.27■■□□□ 1.48
UPF3A-203ENST00000474056 PTGER2P43116 358 aa24.26■■□□□ 1.47
UPF3A-203ENST00000474056 SMARCC1Q92922 1105 aaPredicted RBP24.26■■□□□ 1.47
UPF3A-203ENST00000474056 MTFR1LQ9H019 292 aa24.26■■□□□ 1.47
UPF3A-203ENST00000474056 TFCP2L1Q9NZI6 479 aa24.26■■□□□ 1.47
UPF3A-203ENST00000474056 COL24A1Q17RW2 1714 aa24.26■■□□□ 1.47
UPF3A-203ENST00000474056 HMOX1P09601 288 aa24.25■■□□□ 1.47
UPF3A-203ENST00000474056 HSP90AB1P08238 724 aaKnown RBP24.24■■□□□ 1.47
UPF3A-203ENST00000474056 UBR3Q6ZT12 1888 aa24.24■■□□□ 1.47
UPF3A-203ENST00000474056 DCAF5Q96JK2 942 aa24.23■■□□□ 1.47
UPF3A-203ENST00000474056 ASAP1Q9ULH1 1129 aa24.23■■□□□ 1.47
UPF3A-203ENST00000474056 C1orf141Q5JVX7 400 aa24.22■■□□□ 1.47
UPF3A-203ENST00000474056 SGIP1Q9BQI5 828 aa24.22■■□□□ 1.47
UPF3A-203ENST00000474056 ERVV-2B6SEH9 535 aa24.21■■□□□ 1.47
UPF3A-203ENST00000474056 ATG3Q9NT62 314 aa24.2■■□□□ 1.46
UPF3A-203ENST00000474056 LOC102724428A0A0B4J2F2 783 aa24.19■■□□□ 1.46
UPF3A-203ENST00000474056 SIK1P57059 783 aa24.19■■□□□ 1.46
UPF3A-203ENST00000474056 ZNF831Q5JPB2 1677 aa24.18■■□□□ 1.46
UPF3A-203ENST00000474056 U2SURPO15042 1029 aaKnown RBP24.17■■□□□ 1.46
UPF3A-203ENST00000474056 SLC16A10Q8TF71 515 aa24.17■■□□□ 1.46
UPF3A-203ENST00000474056 COL5A3P25940 1745 aaPredicted RBP24.16■■□□□ 1.46
UPF3A-203ENST00000474056 ADAMTS7Q9UKP4 1686 aa24.16■■□□□ 1.46
UPF3A-203ENST00000474056 PPP2R1AP30153 589 aa24.16■■□□□ 1.46
UPF3A-203ENST00000474056 CABP4P57796 275 aa24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms