RNA–Protein interactions for RNA: ENST00000473969.6

USF1-205, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 1,092 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-205ENST00000473969 PCDH11XQ9BZA7 1347 aa18.49■□□□□ 0.55
USF1-205ENST00000473969 PCDH11YQ9BZA8 1340 aa18.49■□□□□ 0.55
USF1-205ENST00000473969 RALBP1Q15311 655 aa18.48■□□□□ 0.55
USF1-205ENST00000473969 SULT6B1Q6IMI4 303 aa18.48■□□□□ 0.55
USF1-205ENST00000473969 DEFB132Q7Z7B7 95 aa18.48■□□□□ 0.55
USF1-205ENST00000473969 U2SURPO15042 1029 aaKnown RBP18.47■□□□□ 0.55
USF1-205ENST00000473969 BCL11BQ9C0K0 894 aaPredicted RBP18.47■□□□□ 0.55
USF1-205ENST00000473969 NUDCQ9Y266 331 aa18.47■□□□□ 0.55
USF1-205ENST00000473969 BCL9O00512 1426 aa18.47■□□□□ 0.55
USF1-205ENST00000473969 PLEKHO1Q53GL0 409 aaPredicted RBP18.46■□□□□ 0.55
USF1-205ENST00000473969 ACSBG1Q96GR2 724 aa18.46■□□□□ 0.55
USF1-205ENST00000473969 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.46■□□□□ 0.55
USF1-205ENST00000473969 NCAPD2Q15021 1401 aa18.46■□□□□ 0.55
USF1-205ENST00000473969 EN1Q05925 392 aaPredicted RBP18.45■□□□□ 0.54
USF1-205ENST00000473969 RGPD1P0DJD0 1748 aa18.45■□□□□ 0.54
USF1-205ENST00000473969 AMOTQ4VCS5 1084 aa18.44■□□□□ 0.54
USF1-205ENST00000473969 SYTL4Q96C24 671 aaPredicted RBP18.44■□□□□ 0.54
USF1-205ENST00000473969 PARD3Q8TEW0 1356 aa18.43■□□□□ 0.54
USF1-205ENST00000473969 HMOX1P09601 288 aa18.42■□□□□ 0.54
USF1-205ENST00000473969 AEBP1Q8IUX7 1158 aa18.42■□□□□ 0.54
USF1-205ENST00000473969 IFNL2Q8IZJ0 200 aa18.42■□□□□ 0.54
USF1-205ENST00000473969 PLEKHG2Q9H7P9 1386 aa18.42■□□□□ 0.54
USF1-205ENST00000473969 KCNQ2O43526 872 aa18.41■□□□□ 0.54
USF1-205ENST00000473969 CYP27B1O15528 508 aa18.4■□□□□ 0.54
USF1-205ENST00000473969 PRIM1P49642 420 aaKnown RBP18.4■□□□□ 0.54
USF1-205ENST00000473969 EZH2Q15910 746 aaKnown RBP18.4■□□□□ 0.54
USF1-205ENST00000473969 C1orf141Q5JVX7 400 aa18.4■□□□□ 0.54
USF1-205ENST00000473969 EP400Q96L91 3159 aa18.39■□□□□ 0.53
USF1-205ENST00000473969 PLSCR1O15162 318 aa18.39■□□□□ 0.53
USF1-205ENST00000473969 HSP90AB1P08238 724 aaKnown RBP18.39■□□□□ 0.53
USF1-205ENST00000473969 ZNF530Q6P9A1 599 aaPredicted RBP18.39■□□□□ 0.53
USF1-205ENST00000473969 KDRP35968 1356 aa18.39■□□□□ 0.53
USF1-205ENST00000473969 U2AF1L5P0DN76 240 aaPredicted RBP18.38■□□□□ 0.53
USF1-205ENST00000473969 PHKG2P15735 406 aa18.38■□□□□ 0.53
USF1-205ENST00000473969 U2AF1Q01081 240 aaKnown RBP eCLIP18.38■□□□□ 0.53
USF1-205ENST00000473969 CAMKK2Q96RR4 588 aa18.38■□□□□ 0.53
USF1-205ENST00000473969 MYBBP1AQ9BQG0 1328 aaKnown RBP18.38■□□□□ 0.53
USF1-205ENST00000473969 PTF1AQ7RTS3 328 aa18.37■□□□□ 0.53
USF1-205ENST00000473969 COL3A1P02461 1466 aaPredicted RBP18.36■□□□□ 0.53
USF1-205ENST00000473969 NKX1-1Q15270 411 aaPredicted RBP18.36■□□□□ 0.53
USF1-205ENST00000473969 TNS1Q9HBL0 1735 aaKnown RBP18.35■□□□□ 0.53
USF1-205ENST00000473969 NEFMP07197 916 aa18.35■□□□□ 0.53
USF1-205ENST00000473969 NBPF14Q5TI25 921 aa18.35■□□□□ 0.53
USF1-205ENST00000473969 PRKRIP1Q9H875 184 aaPredicted RBP18.35■□□□□ 0.53
USF1-205ENST00000473969 KAT6BQ8WYB5 2073 aa18.34■□□□□ 0.53
USF1-205ENST00000473969 MPRIPQ6WCQ1 1025 aa18.34■□□□□ 0.53
USF1-205ENST00000473969 SBF2Q86WG5 1849 aa18.34■□□□□ 0.53
USF1-205ENST00000473969 PKD1L3Q7Z443 1732 aa18.34■□□□□ 0.53
USF1-205ENST00000473969 DCAF5Q96JK2 942 aa18.33■□□□□ 0.52
USF1-205ENST00000473969 NHSQ6T4R5 1651 aa18.32■□□□□ 0.52
USF1-205ENST00000473969 FCHSD2O94868 740 aa18.32■□□□□ 0.52
USF1-205ENST00000473969 AKAP4Q5JQC9 854 aa18.32■□□□□ 0.52
USF1-205ENST00000473969 PNNQ9H307 717 aaKnown RBP18.32■□□□□ 0.52
USF1-205ENST00000473969 TMOD3Q9NYL9 352 aa18.32■□□□□ 0.52
USF1-205ENST00000473969 SHANK3Q9BYB0 1731 aa18.32■□□□□ 0.52
USF1-205ENST00000473969 ANP32CO43423 234 aa18.31■□□□□ 0.52
USF1-205ENST00000473969 PRKAR2BP31323 418 aa18.31■□□□□ 0.52
USF1-205ENST00000473969 TXNRD1Q16881 649 aa18.31■□□□□ 0.52
USF1-205ENST00000473969 GAS2L2Q8NHY3 880 aa18.31■□□□□ 0.52
USF1-205ENST00000473969 SRCAPQ6ZRS2 3230 aa18.31■□□□□ 0.52
USF1-205ENST00000473969 MTHFSDQ2M296 383 aaKnown RBP18.3■□□□□ 0.52
USF1-205ENST00000473969 ERVV-2B6SEH9 535 aa18.29■□□□□ 0.52
USF1-205ENST00000473969 CABP4P57796 275 aa18.29■□□□□ 0.52
USF1-205ENST00000473969 SMARCC1Q92922 1105 aaPredicted RBP18.29■□□□□ 0.52
USF1-205ENST00000473969 RSPH6AQ9H0K4 717 aa18.29■□□□□ 0.52
USF1-205ENST00000473969 DOT1LQ8TEK3 1739 aa18.29■□□□□ 0.52
USF1-205ENST00000473969 HMGB2P26583 209 aaKnown RBP18.28■□□□□ 0.52
USF1-205ENST00000473969 WDR43Q15061 677 aaKnown RBP eCLIP18.27■□□□□ 0.52
USF1-205ENST00000473969 SLC27A3Q5K4L6 730 aa18.27■□□□□ 0.52
USF1-205ENST00000473969 PIGBQ92521 554 aa18.27■□□□□ 0.52
USF1-205ENST00000473969 GNAT3A8MTJ3 354 aa18.25■□□□□ 0.51
USF1-205ENST00000473969 PROM2Q8N271 834 aa18.25■□□□□ 0.51
USF1-205ENST00000473969 STK32BQ9NY57 414 aa18.25■□□□□ 0.51
USF1-205ENST00000473969 BTAF1O14981 1849 aa18.25■□□□□ 0.51
USF1-205ENST00000473969 MAPK8IP3Q9UPT6 1336 aa18.24■□□□□ 0.51
USF1-205ENST00000473969 PSDA5PKW4 1024 aaPredicted RBP18.24■□□□□ 0.51
USF1-205ENST00000473969 R3HDM1Q15032 1099 aaKnown RBP18.24■□□□□ 0.51
USF1-205ENST00000473969 RTF1Q92541 710 aaKnown RBP18.24■□□□□ 0.51
USF1-205ENST00000473969 PHACTR3Q96KR7 559 aa18.24■□□□□ 0.51
USF1-205ENST00000473969 CCNL1Q9UK58 526 aaPredicted RBP18.24■□□□□ 0.51
USF1-205ENST00000473969 RGPD3A6NKT7 1758 aaPredicted RBP18.23■□□□□ 0.51
USF1-205ENST00000473969 RGPD4Q7Z3J3 1758 aa18.23■□□□□ 0.51
USF1-205ENST00000473969 PALLDQ8WX93 1383 aa18.23■□□□□ 0.51
USF1-205ENST00000473969 RNMTO43148 476 aaKnown RBP18.23■□□□□ 0.51
USF1-205ENST00000473969 MAP3K5Q99683 1374 aa18.22■□□□□ 0.51
USF1-205ENST00000473969 NFATC2IPQ8NCF5 419 aa18.22■□□□□ 0.51
USF1-205ENST00000473969 LGR6Q9HBX8 967 aa18.22■□□□□ 0.51
USF1-205ENST00000473969 TEFQ10587 303 aa18.21■□□□□ 0.51
USF1-205ENST00000473969 ASAP1Q9ULH1 1129 aa18.21■□□□□ 0.51
USF1-205ENST00000473969 KDM6AO15550 1401 aaPredicted RBP18.21■□□□□ 0.51
USF1-205ENST00000473969 RREB1Q92766 1687 aa18.2■□□□□ 0.5
USF1-205ENST00000473969 SLC52A2Q9HAB3 445 aa18.2■□□□□ 0.5
USF1-205ENST00000473969 SLC15A2Q16348 729 aa18.19■□□□□ 0.5
USF1-205ENST00000473969 RBM42Q9BTD8 480 aaKnown RBP18.19■□□□□ 0.5
USF1-205ENST00000473969 ATG3Q9NT62 314 aa18.19■□□□□ 0.5
USF1-205ENST00000473969 LRRC4BQ9NT99 713 aa18.19■□□□□ 0.5
USF1-205ENST00000473969 TOGARAM1Q9Y4F4 1720 aa18.18■□□□□ 0.5
USF1-205ENST00000473969 LOC102724428A0A0B4J2F2 783 aa18.18■□□□□ 0.5
USF1-205ENST00000473969 KCNQ4P56696 695 aa18.18■□□□□ 0.5
USF1-205ENST00000473969 SIK1P57059 783 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms