RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 ZCRB1Q8TBF4 217 aaKnown RBP25.78■■□□□ 1.72
PTCD3-210ENST00000473829 DDX54Q8TDD1 881 aaKnown RBP25.78■■□□□ 1.72
PTCD3-210ENST00000473829 DOT1LQ8TEK3 1739 aa25.77■■□□□ 1.72
PTCD3-210ENST00000473829 RGPD3A6NKT7 1758 aaPredicted RBP25.77■■□□□ 1.72
PTCD3-210ENST00000473829 RGPD4Q7Z3J3 1758 aa25.77■■□□□ 1.72
PTCD3-210ENST00000473829 EZH2Q15910 746 aaKnown RBP25.77■■□□□ 1.72
PTCD3-210ENST00000473829 CAMKK2Q96RR4 588 aa25.77■■□□□ 1.72
PTCD3-210ENST00000473829 TATP17735 454 aaPredicted RBP25.76■■□□□ 1.71
PTCD3-210ENST00000473829 BCL11BQ9C0K0 894 aaPredicted RBP25.76■■□□□ 1.71
PTCD3-210ENST00000473829 NUP188Q5SRE5 1749 aa25.76■■□□□ 1.71
PTCD3-210ENST00000473829 IGSF1Q8N6C5 1336 aa25.75■■□□□ 1.71
PTCD3-210ENST00000473829 KCNQ2O43526 872 aa25.75■■□□□ 1.71
PTCD3-210ENST00000473829 ACSBG1Q96GR2 724 aa25.75■■□□□ 1.71
PTCD3-210ENST00000473829 MTHFSP49914 203 aa25.74■■□□□ 1.71
PTCD3-210ENST00000473829 BTAF1O14981 1849 aa25.74■■□□□ 1.71
PTCD3-210ENST00000473829 PARD3Q8TEW0 1356 aa25.72■■□□□ 1.71
PTCD3-210ENST00000473829 ZEB1P37275 1124 aaPredicted RBP25.72■■□□□ 1.71
PTCD3-210ENST00000473829 KAT6BQ8WYB5 2073 aa25.7■■□□□ 1.71
PTCD3-210ENST00000473829 IL13P35225 146 aa25.7■■□□□ 1.7
PTCD3-210ENST00000473829 COL3A1P02461 1466 aaPredicted RBP25.7■■□□□ 1.7
PTCD3-210ENST00000473829 TOGARAM1Q9Y4F4 1720 aa25.69■■□□□ 1.7
PTCD3-210ENST00000473829 PCDH11XQ9BZA7 1347 aa25.68■■□□□ 1.7
PTCD3-210ENST00000473829 PCDH11YQ9BZA8 1340 aa25.68■■□□□ 1.7
PTCD3-210ENST00000473829 CYP27B1O15528 508 aa25.67■■□□□ 1.7
PTCD3-210ENST00000473829 AEBP1Q8IUX7 1158 aa25.67■■□□□ 1.7
PTCD3-210ENST00000473829 PLSCR1O15162 318 aa25.66■■□□□ 1.7
PTCD3-210ENST00000473829 KDRP35968 1356 aa25.63■■□□□ 1.69
PTCD3-210ENST00000473829 PLEKHG2Q9H7P9 1386 aa25.62■■□□□ 1.69
PTCD3-210ENST00000473829 PRIM1P49642 420 aaKnown RBP25.62■■□□□ 1.69
PTCD3-210ENST00000473829 PROM2Q8N271 834 aa25.62■■□□□ 1.69
PTCD3-210ENST00000473829 SPG7Q9UQ90 795 aa25.62■■□□□ 1.69
PTCD3-210ENST00000473829 ITGB4P16144 1822 aa25.61■■□□□ 1.69
PTCD3-210ENST00000473829 SULT6B1Q6IMI4 303 aa25.61■■□□□ 1.69
PTCD3-210ENST00000473829 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.61■■□□□ 1.691e-12■■□□□ 13.1
PTCD3-210ENST00000473829 PSDA5PKW4 1024 aaPredicted RBP25.6■■□□□ 1.69
PTCD3-210ENST00000473829 DDX10Q13206 875 aaKnown RBP25.6■■□□□ 1.69
PTCD3-210ENST00000473829 SYTL4Q96C24 671 aaPredicted RBP25.6■■□□□ 1.69
PTCD3-210ENST00000473829 DIAPH1O60610 1272 aaKnown RBP25.59■■□□□ 1.69
PTCD3-210ENST00000473829 PPP2R1AP30153 589 aa25.59■■□□□ 1.69
PTCD3-210ENST00000473829 PHKG2P15735 406 aa25.57■■□□□ 1.68
PTCD3-210ENST00000473829 TXNRD1Q16881 649 aa25.57■■□□□ 1.68
PTCD3-210ENST00000473829 SRCAPQ6ZRS2 3230 aa25.57■■□□□ 1.68
PTCD3-210ENST00000473829 LY75O60449 1722 aa25.57■■□□□ 1.68
PTCD3-210ENST00000473829 R3HDM1Q15032 1099 aaKnown RBP25.56■■□□□ 1.68
PTCD3-210ENST00000473829 NKX1-1Q15270 411 aaPredicted RBP25.56■■□□□ 1.68
PTCD3-210ENST00000473829 PAPPAQ13219 1627 aa25.55■■□□□ 1.68
PTCD3-210ENST00000473829 HMOX1P09601 288 aa25.55■■□□□ 1.68
PTCD3-210ENST00000473829 ANO8Q9HCE9 1232 aaPredicted RBP25.55■■□□□ 1.68
PTCD3-210ENST00000473829 IFNL2Q8IZJ0 200 aa25.54■■□□□ 1.68
PTCD3-210ENST00000473829 PLEKHO1Q53GL0 409 aaPredicted RBP25.52■■□□□ 1.68
PTCD3-210ENST00000473829 ZNF530Q6P9A1 599 aaPredicted RBP25.51■■□□□ 1.67
PTCD3-210ENST00000473829 KDM6AO15550 1401 aaPredicted RBP25.5■■□□□ 1.67
PTCD3-210ENST00000473829 AMOTQ4VCS5 1084 aa25.5■■□□□ 1.67
PTCD3-210ENST00000473829 LRRC4BQ9NT99 713 aa25.5■■□□□ 1.67
PTCD3-210ENST00000473829 U2SURPO15042 1029 aaKnown RBP25.49■■□□□ 1.67
PTCD3-210ENST00000473829 NBPF14Q5TI25 921 aa25.49■■□□□ 1.67
PTCD3-210ENST00000473829 MPRIPQ6WCQ1 1025 aa25.49■■□□□ 1.67
PTCD3-210ENST00000473829 CFAP53Q96M91 514 aa25.49■■□□□ 1.67
PTCD3-210ENST00000473829 KCNQ4P56696 695 aa25.46■■□□□ 1.67
PTCD3-210ENST00000473829 PIGBQ92521 554 aa25.46■■□□□ 1.67
PTCD3-210ENST00000473829 VIRMAQ69YN4 1812 aaKnown RBP25.46■■□□□ 1.67
PTCD3-210ENST00000473829 SCN11AQ9UI33 1791 aa25.46■■□□□ 1.67
PTCD3-210ENST00000473829 CASZ1Q86V15 1759 aa25.45■■□□□ 1.66
PTCD3-210ENST00000473829 LRP5O75197 1615 aa25.44■■□□□ 1.66
PTCD3-210ENST00000473829 PALLDQ8WX93 1383 aa25.44■■□□□ 1.66
PTCD3-210ENST00000473829 DCAF5Q96JK2 942 aa25.43■■□□□ 1.66
PTCD3-210ENST00000473829 TUBGCP6Q96RT7 1819 aa25.42■■□□□ 1.66
PTCD3-210ENST00000473829 C1orf141Q5JVX7 400 aa25.42■■□□□ 1.66
PTCD3-210ENST00000473829 SLC27A3Q5K4L6 730 aa25.42■■□□□ 1.66
PTCD3-210ENST00000473829 TMOD3Q9NYL9 352 aa25.42■■□□□ 1.66
PTCD3-210ENST00000473829 C5P01031 1676 aa25.42■■□□□ 1.66
PTCD3-210ENST00000473829 HSP90AB1P08238 724 aaKnown RBP25.41■■□□□ 1.66
PTCD3-210ENST00000473829 ZNF827Q17R98 1081 aa25.41■■□□□ 1.66
PTCD3-210ENST00000473829 MTHFSDQ2M296 383 aaKnown RBP25.41■■□□□ 1.66
PTCD3-210ENST00000473829 TAF1LQ8IZX4 1826 aa25.41■■□□□ 1.66
PTCD3-210ENST00000473829 ADAMTS7Q9UKP4 1686 aa25.41■■□□□ 1.66
PTCD3-210ENST00000473829 RALBP1Q15311 655 aa25.4■■□□□ 1.66
PTCD3-210ENST00000473829 SLC15A2Q16348 729 aa25.4■■□□□ 1.66
PTCD3-210ENST00000473829 RSPH6AQ9H0K4 717 aa25.4■■□□□ 1.66
PTCD3-210ENST00000473829 STK32BQ9NY57 414 aa25.4■■□□□ 1.66
PTCD3-210ENST00000473829 AKAP4Q5JQC9 854 aa25.39■■□□□ 1.66
PTCD3-210ENST00000473829 PDGFDQ9GZP0 370 aaPredicted RBP25.39■■□□□ 1.66
PTCD3-210ENST00000473829 CCNL1Q9UK58 526 aaPredicted RBP25.39■■□□□ 1.66
PTCD3-210ENST00000473829 NUDCQ9Y266 331 aa25.39■■□□□ 1.66
PTCD3-210ENST00000473829 ERVV-2B6SEH9 535 aa25.38■■□□□ 1.65
PTCD3-210ENST00000473829 ASAP1Q9ULH1 1129 aa25.38■■□□□ 1.65
PTCD3-210ENST00000473829 U2AF1L5P0DN76 240 aaPredicted RBP25.37■■□□□ 1.65
PTCD3-210ENST00000473829 PRKAR2BP31323 418 aa25.37■■□□□ 1.65
PTCD3-210ENST00000473829 U2AF1Q01081 240 aaKnown RBP eCLIP25.37■■□□□ 1.65
PTCD3-210ENST00000473829 QSER1Q2KHR3 1735 aa25.37■■□□□ 1.65
PTCD3-210ENST00000473829 MRC1P22897 1456 aa25.36■■□□□ 1.65
PTCD3-210ENST00000473829 ZNF316A6NFI3 1004 aaPredicted RBP25.36■■□□□ 1.65
PTCD3-210ENST00000473829 AKT1S1Q96B36 256 aa25.36■■□□□ 1.65
PTCD3-210ENST00000473829 SMARCC1Q92922 1105 aaPredicted RBP25.35■■□□□ 1.65
PTCD3-210ENST00000473829 PHACTR3Q96KR7 559 aa25.35■■□□□ 1.65
PTCD3-210ENST00000473829 ATG3Q9NT62 314 aa25.35■■□□□ 1.65
PTCD3-210ENST00000473829 LGR6Q9HBX8 967 aa25.34■■□□□ 1.65
PTCD3-210ENST00000473829 MYBBP1AQ9BQG0 1328 aaKnown RBP25.34■■□□□ 1.65
PTCD3-210ENST00000473829 CABP4P57796 275 aa25.33■■□□□ 1.65
PTCD3-210ENST00000473829 C4BP0C0L5 1744 aa25.32■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms