RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 HSP90AB2PQ58FF8 381 aa26.12■■□□□ 1.77
CCDC88B-206ENST00000473405 SLC15A2Q16348 729 aa26.11■■□□□ 1.77
CCDC88B-206ENST00000473405 USHBP1Q8N6Y0 703 aa26.11■■□□□ 1.77
CCDC88B-206ENST00000473405 STK32BQ9NY57 414 aa26.11■■□□□ 1.77
CCDC88B-206ENST00000473405 NSD2O96028 1365 aa26.1■■□□□ 1.77
CCDC88B-206ENST00000473405 QSER1Q2KHR3 1735 aa26.1■■□□□ 1.77
CCDC88B-206ENST00000473405 PKD1L3Q7Z443 1732 aa26.1■■□□□ 1.77
CCDC88B-206ENST00000473405 ZCRB1Q8TBF4 217 aaKnown RBP26.09■■□□□ 1.77
CCDC88B-206ENST00000473405 EMILIN1Q9Y6C2 1016 aa26.09■■□□□ 1.77
CCDC88B-206ENST00000473405 UTRNP46939 3433 aa26.09■■□□□ 1.77
CCDC88B-206ENST00000473405 TUBGCP6Q96RT7 1819 aa26.09■■□□□ 1.77
CCDC88B-206ENST00000473405 CCER1Q8TC90 406 aaPredicted RBP26.08■■□□□ 1.77
CCDC88B-206ENST00000473405 LRRC4BQ9NT99 713 aa26.07■■□□□ 1.76
CCDC88B-206ENST00000473405 CGNL1Q0VF96 1302 aa26.07■■□□□ 1.76
CCDC88B-206ENST00000473405 NCAPD2Q15021 1401 aa26.06■■□□□ 1.76
CCDC88B-206ENST00000473405 TOGARAM1Q9Y4F4 1720 aa26.05■■□□□ 1.76
CCDC88B-206ENST00000473405 ZBTB7AO95365 584 aa26.05■■□□□ 1.76
CCDC88B-206ENST00000473405 HSPA5P11021 654 aaKnown RBP26.05■■□□□ 1.76
CCDC88B-206ENST00000473405 EIF4G2P78344 907 aaKnown RBP eCLIP26.05■■□□□ 1.76
CCDC88B-206ENST00000473405 PPP1R1BQ9UD71 204 aaPredicted RBP26.05■■□□□ 1.76
CCDC88B-206ENST00000473405 PRIM1P49642 420 aaKnown RBP26.04■■□□□ 1.76
CCDC88B-206ENST00000473405 PTGER2P43116 358 aa26.03■■□□□ 1.76
CCDC88B-206ENST00000473405 ZNF827Q17R98 1081 aa26.03■■□□□ 1.76
CCDC88B-206ENST00000473405 RAPGEF4Q8WZA2 1011 aa26.03■■□□□ 1.76
CCDC88B-206ENST00000473405 SYTL4Q96C24 671 aaPredicted RBP26.02■■□□□ 1.76
CCDC88B-206ENST00000473405 POLR3GLQ9BT43 218 aa26.02■■□□□ 1.76
CCDC88B-206ENST00000473405 ITGB4P16144 1822 aa26■■□□□ 1.75
CCDC88B-206ENST00000473405 TATP17735 454 aaPredicted RBP26■■□□□ 1.75
CCDC88B-206ENST00000473405 SLC27A3Q5K4L6 730 aa25.99■■□□□ 1.75
CCDC88B-206ENST00000473405 COL24A1Q17RW2 1714 aa25.99■■□□□ 1.75
CCDC88B-206ENST00000473405 WASHC2AQ641Q2 1341 aa25.98■■□□□ 1.75
CCDC88B-206ENST00000473405 PCDH11XQ9BZA7 1347 aa25.98■■□□□ 1.75
CCDC88B-206ENST00000473405 PCDH11YQ9BZA8 1340 aa25.98■■□□□ 1.75
CCDC88B-206ENST00000473405 ATF5Q9Y2D1 282 aaPredicted RBP25.98■■□□□ 1.75
CCDC88B-206ENST00000473405 GOLGB1Q14789 3259 aaKnown RBP25.98■■□□□ 1.75
CCDC88B-206ENST00000473405 PPM1GO15355 546 aaPredicted RBP25.97■■□□□ 1.75
CCDC88B-206ENST00000473405 AKT1S1Q96B36 256 aa25.97■■□□□ 1.75
CCDC88B-206ENST00000473405 MTFR1LQ9H019 292 aa25.97■■□□□ 1.75
CCDC88B-206ENST00000473405 C5P01031 1676 aa25.96■■□□□ 1.75
CCDC88B-206ENST00000473405 SGIP1Q9BQI5 828 aa25.96■■□□□ 1.75
CCDC88B-206ENST00000473405 POLKQ9UBT6 870 aa25.96■■□□□ 1.75
CCDC88B-206ENST00000473405 KCNQ4P56696 695 aa25.95■■□□□ 1.74
CCDC88B-206ENST00000473405 TAF1LQ8IZX4 1826 aa25.95■■□□□ 1.74
CCDC88B-206ENST00000473405 CYP27B1O15528 508 aa25.94■■□□□ 1.74
CCDC88B-206ENST00000473405 PANK3Q9H999 370 aa25.92■■□□□ 1.74
CCDC88B-206ENST00000473405 EYA1Q99502 592 aa25.91■■□□□ 1.74
CCDC88B-206ENST00000473405 PNPLA7Q6ZV29 1317 aa25.9■■□□□ 1.74
CCDC88B-206ENST00000473405 TNNT2P45379 298 aaPredicted RBP25.9■■□□□ 1.74
CCDC88B-206ENST00000473405 CCNL1Q9UK58 526 aaPredicted RBP25.89■■□□□ 1.74
CCDC88B-206ENST00000473405 EIF4A2Q14240 407 aaKnown RBP25.87■■□□□ 1.73
CCDC88B-206ENST00000473405 FHDC1Q9C0D6 1143 aaPredicted RBP25.86■■□□□ 1.73
CCDC88B-206ENST00000473405 PALLDQ8WX93 1383 aa25.85■■□□□ 1.73
CCDC88B-206ENST00000473405 TFCP2L1Q9NZI6 479 aa25.85■■□□□ 1.73
CCDC88B-206ENST00000473405 NKX1-1Q15270 411 aaPredicted RBP25.84■■□□□ 1.73
CCDC88B-206ENST00000473405 SPG7Q9UQ90 795 aa25.84■■□□□ 1.73
CCDC88B-206ENST00000473405 C4BP0C0L5 1744 aa25.83■■□□□ 1.73
CCDC88B-206ENST00000473405 MPRIPQ6WCQ1 1025 aa25.83■■□□□ 1.73
CCDC88B-206ENST00000473405 ARXQ96QS3 562 aa25.83■■□□□ 1.73
CCDC88B-206ENST00000473405 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.83■■□□□ 1.73
CCDC88B-206ENST00000473405 MAP3K5Q99683 1374 aa25.82■■□□□ 1.72
CCDC88B-206ENST00000473405 PLEKHG2Q9H7P9 1386 aa25.82■■□□□ 1.72
CCDC88B-206ENST00000473405 SLC16A10Q8TF71 515 aa25.82■■□□□ 1.72
CCDC88B-206ENST00000473405 SYT17Q9BSW7 474 aa25.82■■□□□ 1.72
CCDC88B-206ENST00000473405 IGSF1Q8N6C5 1336 aa25.82■■□□□ 1.72
CCDC88B-206ENST00000473405 KIF7Q2M1P5 1343 aa25.8■■□□□ 1.72
CCDC88B-206ENST00000473405 UBR3Q6ZT12 1888 aa25.79■■□□□ 1.72
CCDC88B-206ENST00000473405 PIGBQ92521 554 aa25.79■■□□□ 1.72
CCDC88B-206ENST00000473405 DCAF8L1A6NGE4 600 aa25.77■■□□□ 1.72
CCDC88B-206ENST00000473405 PHKG2P15735 406 aa25.77■■□□□ 1.72
CCDC88B-206ENST00000473405 YY1P25490 414 aa25.76■■□□□ 1.71
CCDC88B-206ENST00000473405 MORC1Q86VD1 984 aa25.76■■□□□ 1.71
CCDC88B-206ENST00000473405 COL23A1Q86Y22 540 aaPredicted RBP25.75■■□□□ 1.71
CCDC88B-206ENST00000473405 KNSTRNQ9Y448 316 aa25.75■■□□□ 1.71
CCDC88B-206ENST00000473405 AMER1Q5JTC6 1135 aaPredicted RBP25.74■■□□□ 1.71
CCDC88B-206ENST00000473405 IFNL2Q8IZJ0 200 aa25.74■■□□□ 1.71
CCDC88B-206ENST00000473405 SMARCC1Q92922 1105 aaPredicted RBP25.74■■□□□ 1.71
CCDC88B-206ENST00000473405 POLD1P28340 1107 aa25.72■■□□□ 1.71
CCDC88B-206ENST00000473405 CHD4Q14839 1912 aa25.72■■□□□ 1.71
CCDC88B-206ENST00000473405 ZNF831Q5JPB2 1677 aa25.71■■□□□ 1.71
CCDC88B-206ENST00000473405 TMOD3Q9NYL9 352 aa25.71■■□□□ 1.71
CCDC88B-206ENST00000473405 MSH5O43196 834 aa25.69■■□□□ 1.7
CCDC88B-206ENST00000473405 AMIGO3Q86WK7 504 aa25.69■■□□□ 1.7
CCDC88B-206ENST00000473405 AEBP1Q8IUX7 1158 aa25.69■■□□□ 1.7
CCDC88B-206ENST00000473405 ASAP1Q9ULH1 1129 aa25.69■■□□□ 1.7
CCDC88B-206ENST00000473405 KDM6AO15550 1401 aaPredicted RBP25.69■■□□□ 1.7
CCDC88B-206ENST00000473405 KDRP35968 1356 aa25.69■■□□□ 1.7
CCDC88B-206ENST00000473405 COL5A3P25940 1745 aaPredicted RBP25.68■■□□□ 1.7
CCDC88B-206ENST00000473405 LOC102724428A0A0B4J2F2 783 aa25.67■■□□□ 1.7
CCDC88B-206ENST00000473405 HMGB2P26583 209 aaKnown RBP25.67■■□□□ 1.7
CCDC88B-206ENST00000473405 SIK1P57059 783 aa25.67■■□□□ 1.7
CCDC88B-206ENST00000473405 MSL1Q68DK7 614 aa25.66■■□□□ 1.7
CCDC88B-206ENST00000473405 LINC00116Q8NCU8 138 aa25.66■■□□□ 1.7
CCDC88B-206ENST00000473405 SCN11AQ9UI33 1791 aa25.65■■□□□ 1.7
CCDC88B-206ENST00000473405 PER1O15534 1290 aaPredicted RBP25.65■■□□□ 1.7
CCDC88B-206ENST00000473405 KLHL34Q8N239 644 aa25.65■■□□□ 1.7
CCDC88B-206ENST00000473405 AK7Q96M32 723 aa25.65■■□□□ 1.7
CCDC88B-206ENST00000473405 ATG3Q9NT62 314 aa25.65■■□□□ 1.7
CCDC88B-206ENST00000473405 IL13P35225 146 aa25.64■■□□□ 1.7
CCDC88B-206ENST00000473405 ITPK1Q13572 414 aa25.64■■□□□ 1.7
CCDC88B-206ENST00000473405 FLAD1Q8NFF5 587 aa25.64■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms