RNA–Protein interactions for RNA: ENST00000472988.5

SMARCD3-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,654 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-209ENST00000472988 SLFN5Q08AF3 891 aa25.13■■□□□ 1.61
SMARCD3-209ENST00000472988 SHANK3Q9BYB0 1731 aa25.12■■□□□ 1.61
SMARCD3-209ENST00000472988 LMOD3Q0VAK6 560 aa25.11■■□□□ 1.61
SMARCD3-209ENST00000472988 CARD10Q9BWT7 1032 aa25.1■■□□□ 1.61
SMARCD3-209ENST00000472988 DUSP27Q5VZP5 1158 aa25.1■■□□□ 1.61
SMARCD3-209ENST00000472988 TRMT2AQ8IZ69 625 aaKnown RBP25.1■■□□□ 1.61
SMARCD3-209ENST00000472988 THUMPD2Q9BTF0 503 aaKnown RBP25.1■■□□□ 1.61
SMARCD3-209ENST00000472988 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.09■■□□□ 1.61
SMARCD3-209ENST00000472988 PLEKHG2Q9H7P9 1386 aa25.09■■□□□ 1.61
SMARCD3-209ENST00000472988 E9PSI1 815 aa25.09■■□□□ 1.61
SMARCD3-209ENST00000472988 RAPGEF4Q8WZA2 1011 aa25.09■■□□□ 1.61
SMARCD3-209ENST00000472988 MAP3K5Q99683 1374 aa25.09■■□□□ 1.61
SMARCD3-209ENST00000472988 OVOS2A0A0G2JMS6 1433 aa25.08■■□□□ 1.6
SMARCD3-209ENST00000472988 DCTN1Q14203 1278 aa25.07■■□□□ 1.6
SMARCD3-209ENST00000472988 ADAMTS7Q9UKP4 1686 aa25.07■■□□□ 1.6
SMARCD3-209ENST00000472988 TATP17735 454 aaPredicted RBP25.07■■□□□ 1.6
SMARCD3-209ENST00000472988 AMOTQ4VCS5 1084 aa25.07■■□□□ 1.6
SMARCD3-209ENST00000472988 PLEKHO1Q53GL0 409 aaPredicted RBP25.07■■□□□ 1.6
SMARCD3-209ENST00000472988 IL16Q14005 1332 aa25.06■■□□□ 1.6
SMARCD3-209ENST00000472988 SCN11AQ9UI33 1791 aa25.05■■□□□ 1.6
SMARCD3-209ENST00000472988 MCM10Q7L590 875 aa25.04■■□□□ 1.6
SMARCD3-209ENST00000472988 C8orf37Q96NL8 207 aa25.04■■□□□ 1.6
SMARCD3-209ENST00000472988 GNAT3A8MTJ3 354 aa25.04■■□□□ 1.6
SMARCD3-209ENST00000472988 ZNF530Q6P9A1 599 aaPredicted RBP25.04■■□□□ 1.6
SMARCD3-209ENST00000472988 BCL9LQ86UU0 1499 aa25.02■■□□□ 1.6
SMARCD3-209ENST00000472988 USP35Q9P2H5 1018 aa25.02■■□□□ 1.6
SMARCD3-209ENST00000472988 SIPA1L3O60292 1781 aaPredicted RBP25.02■■□□□ 1.6
SMARCD3-209ENST00000472988 DISP2A7MBM2 1401 aa25.02■■□□□ 1.6
SMARCD3-209ENST00000472988 HTATSF1O43719 755 aaKnown RBP25.01■■□□□ 1.59
SMARCD3-209ENST00000472988 FANCIQ9NVI1 1328 aa25.01■■□□□ 1.59
SMARCD3-209ENST00000472988 IL2RBP14784 551 aa25.01■■□□□ 1.59
SMARCD3-209ENST00000472988 CALD1Q05682 793 aaKnown RBP25.01■■□□□ 1.59
SMARCD3-209ENST00000472988 RTF1Q92541 710 aaKnown RBP25.01■■□□□ 1.59
SMARCD3-209ENST00000472988 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.01■■□□□ 1.59
SMARCD3-209ENST00000472988 AKAP4Q5JQC9 854 aa25■■□□□ 1.59
SMARCD3-209ENST00000472988 NGLY1Q96IV0 654 aa25■■□□□ 1.59
SMARCD3-209ENST00000472988 MYH16Q9H6N6 1097 aa25■■□□□ 1.59
SMARCD3-209ENST00000472988 TSR2Q969E8 191 aaKnown RBP24.99■■□□□ 1.59
SMARCD3-209ENST00000472988 SPG7Q9UQ90 795 aa24.99■■□□□ 1.59
SMARCD3-209ENST00000472988 SPATA31A1Q5TZJ5 1347 aa24.98■■□□□ 1.59
SMARCD3-209ENST00000472988 ZNF853P0CG23 659 aa24.97■■□□□ 1.59
SMARCD3-209ENST00000472988 C1orf141Q5JVX7 400 aa24.97■■□□□ 1.59
SMARCD3-209ENST00000472988 FNBP4Q8N3X1 1017 aaPredicted RBP24.97■■□□□ 1.59
SMARCD3-209ENST00000472988 IL17REQ8NFR9 667 aa24.97■■□□□ 1.59
SMARCD3-209ENST00000472988 IFT57Q9NWB7 429 aa24.97■■□□□ 1.59
SMARCD3-209ENST00000472988 CEMIPQ8WUJ3 1361 aa24.97■■□□□ 1.59
SMARCD3-209ENST00000472988 UNC5CLQ8IV45 518 aa24.97■■□□□ 1.59
SMARCD3-209ENST00000472988 LAS1LQ9Y4W2 734 aaKnown RBP24.96■■□□□ 1.59
SMARCD3-209ENST00000472988 SPATA31A5Q5VU36 1347 aa24.96■■□□□ 1.59
SMARCD3-209ENST00000472988 SPATA31A7Q8IWB4 1347 aa24.96■■□□□ 1.59
SMARCD3-209ENST00000472988 KDM3BQ7LBC6 1761 aa24.95■■□□□ 1.59
SMARCD3-209ENST00000472988 GNAI1P63096 354 aa24.95■■□□□ 1.58
SMARCD3-209ENST00000472988 MEX3CQ5U5Q3 659 aaKnown RBP24.95■■□□□ 1.58
SMARCD3-209ENST00000472988 CFAP44Q96MT7 982 aa24.95■■□□□ 1.58
SMARCD3-209ENST00000472988 KDM6AO15550 1401 aaPredicted RBP24.95■■□□□ 1.58
SMARCD3-209ENST00000472988 PHKG2P15735 406 aa24.94■■□□□ 1.58
SMARCD3-209ENST00000472988 CYP27B1O15528 508 aa24.94■■□□□ 1.58
SMARCD3-209ENST00000472988 MPRIPQ6WCQ1 1025 aa24.93■■□□□ 1.58
SMARCD3-209ENST00000472988 ZCRB1Q8TBF4 217 aaKnown RBP24.93■■□□□ 1.58
SMARCD3-209ENST00000472988 LGR6Q9HBX8 967 aa24.93■■□□□ 1.58
SMARCD3-209ENST00000472988 MBIPQ9NS73 344 aa24.93■■□□□ 1.58
SMARCD3-209ENST00000472988 RCAN3Q9UKA8 241 aa24.92■■□□□ 1.58
SMARCD3-209ENST00000472988 SUPT16HQ9Y5B9 1047 aaKnown RBP24.92■■□□□ 1.58
SMARCD3-209ENST00000472988 PCDH11XQ9BZA7 1347 aa24.92■■□□□ 1.58
SMARCD3-209ENST00000472988 PCDH11YQ9BZA8 1340 aa24.92■■□□□ 1.58
SMARCD3-209ENST00000472988 TOGARAM1Q9Y4F4 1720 aa24.92■■□□□ 1.58
SMARCD3-209ENST00000472988 IFNL2Q8IZJ0 200 aa24.91■■□□□ 1.58
SMARCD3-209ENST00000472988 USP21Q9UK80 565 aa24.91■■□□□ 1.58
SMARCD3-209ENST00000472988 THRAP3Q9Y2W1 955 aaKnown RBP24.91■■□□□ 1.58
SMARCD3-209ENST00000472988 CHL1O00533 1208 aa24.9■■□□□ 1.58
SMARCD3-209ENST00000472988 RNMTO43148 476 aaKnown RBP24.9■■□□□ 1.58
SMARCD3-209ENST00000472988 VPS72Q15906 364 aa24.9■■□□□ 1.58
SMARCD3-209ENST00000472988 MRC1P22897 1456 aa24.9■■□□□ 1.58
SMARCD3-209ENST00000472988 TNS2Q63HR2 1409 aa24.89■■□□□ 1.58
SMARCD3-209ENST00000472988 EXOSC9Q06265 439 aaKnown RBP24.89■■□□□ 1.58
SMARCD3-209ENST00000472988 CCDC9Q9Y3X0 531 aaKnown RBP24.89■■□□□ 1.58
SMARCD3-209ENST00000472988 AFF2P51816 1311 aa24.89■■□□□ 1.57
SMARCD3-209ENST00000472988 GLI3P10071 1580 aa24.89■■□□□ 1.57
SMARCD3-209ENST00000472988 FBXO41Q8TF61 875 aa24.88■■□□□ 1.57
SMARCD3-209ENST00000472988 THSD7AQ9UPZ6 1657 aa24.86■■□□□ 1.57
SMARCD3-209ENST00000472988 BARGINQ6ZT62 677 aa24.86■■□□□ 1.57
SMARCD3-209ENST00000472988 MIS18AQ9NYP9 233 aa24.86■■□□□ 1.57
SMARCD3-209ENST00000472988 ITGB4P16144 1822 aa24.85■■□□□ 1.57
SMARCD3-209ENST00000472988 CDCA7Q9BWT1 371 aaPredicted RBP24.85■■□□□ 1.57
SMARCD3-209ENST00000472988 TSPYL4Q9UJ04 414 aa24.85■■□□□ 1.57
SMARCD3-209ENST00000472988 ATRNO75882 1429 aa24.84■■□□□ 1.57
SMARCD3-209ENST00000472988 RNF123Q5XPI4 1314 aa24.84■■□□□ 1.57
SMARCD3-209ENST00000472988 HSP90AB1P08238 724 aaKnown RBP24.84■■□□□ 1.57
SMARCD3-209ENST00000472988 TEFQ10587 303 aa24.84■■□□□ 1.57
SMARCD3-209ENST00000472988 TAF7Q15545 349 aaPredicted RBP24.84■■□□□ 1.57
SMARCD3-209ENST00000472988 DCAF5Q96JK2 942 aa24.84■■□□□ 1.57
SMARCD3-209ENST00000472988 DDX54Q8TDD1 881 aaKnown RBP24.83■■□□□ 1.57
SMARCD3-209ENST00000472988 DOT1LQ8TEK3 1739 aa24.83■■□□□ 1.57
SMARCD3-209ENST00000472988 NKX1-1Q15270 411 aaPredicted RBP24.81■■□□□ 1.56
SMARCD3-209ENST00000472988 BABAM1Q9NWV8 329 aa24.81■■□□□ 1.56
SMARCD3-209ENST00000472988 PAPPAQ13219 1627 aa24.81■■□□□ 1.56
SMARCD3-209ENST00000472988 CT47B1P0C2W7 299 aaPredicted RBP24.81■■□□□ 1.56
SMARCD3-209ENST00000472988 TSPYL6Q8N831 410 aa24.81■■□□□ 1.56
SMARCD3-209ENST00000472988 C8orf58Q8NAV2 365 aa24.8■■□□□ 1.56
SMARCD3-209ENST00000472988 EXOC5O00471 708 aa24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms