RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 EYA1Q99502 592 aa16.37■□□□□ 0.21
SYNE1-221ENST00000472563 KIF20BQ96Q89 1820 aa16.37■□□□□ 0.21
SYNE1-221ENST00000472563 NCAPD2Q15021 1401 aa16.36■□□□□ 0.21
SYNE1-221ENST00000472563 PER1O15534 1290 aaPredicted RBP16.35■□□□□ 0.21
SYNE1-221ENST00000472563 PRIM1P49642 420 aaKnown RBP16.35■□□□□ 0.21
SYNE1-221ENST00000472563 EIF4A2Q14240 407 aaKnown RBP16.35■□□□□ 0.21
SYNE1-221ENST00000472563 ANO8Q9HCE9 1232 aaPredicted RBP16.35■□□□□ 0.21
SYNE1-221ENST00000472563 PCDH11XQ9BZA7 1347 aa16.34■□□□□ 0.21
SYNE1-221ENST00000472563 PCDH11YQ9BZA8 1340 aa16.34■□□□□ 0.21
SYNE1-221ENST00000472563 SYTL4Q96C24 671 aaPredicted RBP16.33■□□□□ 0.2
SYNE1-221ENST00000472563 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.33■□□□□ 0.2
SYNE1-221ENST00000472563 RREB1Q92766 1687 aa16.33■□□□□ 0.2
SYNE1-221ENST00000472563 CYP27B1O15528 508 aa16.32■□□□□ 0.2
SYNE1-221ENST00000472563 STK32BQ9NY57 414 aa16.32■□□□□ 0.2
SYNE1-221ENST00000472563 SPG7Q9UQ90 795 aa16.32■□□□□ 0.2
SYNE1-221ENST00000472563 SLC15A2Q16348 729 aa16.31■□□□□ 0.2
SYNE1-221ENST00000472563 SBF2Q86WG5 1849 aa16.31■□□□□ 0.2
SYNE1-221ENST00000472563 RGPD3A6NKT7 1758 aaPredicted RBP16.31■□□□□ 0.2
SYNE1-221ENST00000472563 RGPD4Q7Z3J3 1758 aa16.31■□□□□ 0.2
SYNE1-221ENST00000472563 IGSF1Q8N6C5 1336 aa16.3■□□□□ 0.2
SYNE1-221ENST00000472563 SLC27A3Q5K4L6 730 aa16.3■□□□□ 0.2
SYNE1-221ENST00000472563 NUP188Q5SRE5 1749 aa16.3■□□□□ 0.2
SYNE1-221ENST00000472563 NHSQ6T4R5 1651 aa16.3■□□□□ 0.2
SYNE1-221ENST00000472563 PLEKHG2Q9H7P9 1386 aa16.29■□□□□ 0.2
SYNE1-221ENST00000472563 NKX1-1Q15270 411 aaPredicted RBP16.29■□□□□ 0.2
SYNE1-221ENST00000472563 LRRC4BQ9NT99 713 aa16.29■□□□□ 0.2
SYNE1-221ENST00000472563 ANKRD26Q9UPS8 1709 aa16.28■□□□□ 0.2
SYNE1-221ENST00000472563 LRP5O75197 1615 aa16.28■□□□□ 0.2
SYNE1-221ENST00000472563 SPON1Q9HCB6 807 aa16.28■□□□□ 0.2
SYNE1-221ENST00000472563 NPC1L1Q9UHC9 1359 aa16.27■□□□□ 0.2
SYNE1-221ENST00000472563 CC2D1BQ5T0F9 858 aaKnown RBP16.26■□□□□ 0.19
SYNE1-221ENST00000472563 IFNL2Q8IZJ0 200 aa16.26■□□□□ 0.19
SYNE1-221ENST00000472563 PHKG2P15735 406 aa16.25■□□□□ 0.19
SYNE1-221ENST00000472563 IL13P35225 146 aa16.25■□□□□ 0.19
SYNE1-221ENST00000472563 MTHFSP49914 203 aa16.25■□□□□ 0.19
SYNE1-221ENST00000472563 PDGFDQ9GZP0 370 aaPredicted RBP16.25■□□□□ 0.19
SYNE1-221ENST00000472563 RGPD2P0DJD1 1756 aa16.24■□□□□ 0.19
SYNE1-221ENST00000472563 AKT1S1Q96B36 256 aa16.24■□□□□ 0.19
SYNE1-221ENST00000472563 ZNF827Q17R98 1081 aa16.23■□□□□ 0.19
SYNE1-221ENST00000472563 AMOTQ4VCS5 1084 aa16.23■□□□□ 0.19
SYNE1-221ENST00000472563 PLEKHO1Q53GL0 409 aaPredicted RBP16.23■□□□□ 0.19
SYNE1-221ENST00000472563 MPRIPQ6WCQ1 1025 aa16.23■□□□□ 0.19
SYNE1-221ENST00000472563 CCNL1Q9UK58 526 aaPredicted RBP16.23■□□□□ 0.19
SYNE1-221ENST00000472563 HMGB2P26583 209 aaKnown RBP16.22■□□□□ 0.19
SYNE1-221ENST00000472563 KCNQ4P56696 695 aa16.22■□□□□ 0.19
SYNE1-221ENST00000472563 SULT6B1Q6IMI4 303 aa16.22■□□□□ 0.19
SYNE1-221ENST00000472563 AEBP1Q8IUX7 1158 aa16.22■□□□□ 0.19
SYNE1-221ENST00000472563 PIGBQ92521 554 aa16.22■□□□□ 0.19
SYNE1-221ENST00000472563 SMARCC1Q92922 1105 aaPredicted RBP16.22■□□□□ 0.19
SYNE1-221ENST00000472563 ZBTB7AO95365 584 aa16.21■□□□□ 0.19
SYNE1-221ENST00000472563 SHANK3Q9BYB0 1731 aa16.21■□□□□ 0.19
SYNE1-221ENST00000472563 BTAF1O14981 1849 aa16.2■□□□□ 0.18
SYNE1-221ENST00000472563 HSP90AB1P08238 724 aaKnown RBP16.2■□□□□ 0.18
SYNE1-221ENST00000472563 MTFR1LQ9H019 292 aa16.2■□□□□ 0.18
SYNE1-221ENST00000472563 KDRP35968 1356 aa16.2■□□□□ 0.18
SYNE1-221ENST00000472563 PALLDQ8WX93 1383 aa16.2■□□□□ 0.18
SYNE1-221ENST00000472563 MAP2P11137 1827 aaKnown RBP16.19■□□□□ 0.18
SYNE1-221ENST00000472563 ZNF530Q6P9A1 599 aaPredicted RBP16.19■□□□□ 0.18
SYNE1-221ENST00000472563 DCAF5Q96JK2 942 aa16.19■□□□□ 0.18
SYNE1-221ENST00000472563 TMOD3Q9NYL9 352 aa16.19■□□□□ 0.18
SYNE1-221ENST00000472563 PPP1R1BQ9UD71 204 aaPredicted RBP16.19■□□□□ 0.18
SYNE1-221ENST00000472563 ERVV-2B6SEH9 535 aa16.18■□□□□ 0.18
SYNE1-221ENST00000472563 DIAPH1O60610 1272 aaKnown RBP16.18■□□□□ 0.18
SYNE1-221ENST00000472563 PTGER2P43116 358 aa16.18■□□□□ 0.18
SYNE1-221ENST00000472563 TFCP2L1Q9NZI6 479 aa16.18■□□□□ 0.18
SYNE1-221ENST00000472563 ATF5Q9Y2D1 282 aaPredicted RBP16.18■□□□□ 0.18
SYNE1-221ENST00000472563 PAPPAQ13219 1627 aa16.18■□□□□ 0.18
SYNE1-221ENST00000472563 PKD1L3Q7Z443 1732 aa16.17■□□□□ 0.18
SYNE1-221ENST00000472563 DOT1LQ8TEK3 1739 aa16.17■□□□□ 0.18
SYNE1-221ENST00000472563 CNGB1Q14028 1251 aaPredicted RBP16.17■□□□□ 0.18
SYNE1-221ENST00000472563 SLC16A10Q8TF71 515 aa16.17■□□□□ 0.18
SYNE1-221ENST00000472563 PNPLA7Q6ZV29 1317 aa16.17■□□□□ 0.18
SYNE1-221ENST00000472563 C1orf141Q5JVX7 400 aa16.15■□□□□ 0.18
SYNE1-221ENST00000472563 SGIP1Q9BQI5 828 aa16.15■□□□□ 0.18
SYNE1-221ENST00000472563 ASAP1Q9ULH1 1129 aa16.15■□□□□ 0.18
SYNE1-221ENST00000472563 ATG3Q9NT62 314 aa16.14■□□□□ 0.17
SYNE1-221ENST00000472563 CASZ1Q86V15 1759 aa16.13■□□□□ 0.17
SYNE1-221ENST00000472563 LOC102724428A0A0B4J2F2 783 aa16.13■□□□□ 0.17
SYNE1-221ENST00000472563 HMOX1P09601 288 aa16.13■□□□□ 0.17
SYNE1-221ENST00000472563 SIK1P57059 783 aa16.13■□□□□ 0.17
SYNE1-221ENST00000472563 FLAD1Q8NFF5 587 aa16.12■□□□□ 0.17
SYNE1-221ENST00000472563 KDM6AO15550 1401 aaPredicted RBP16.11■□□□□ 0.17
SYNE1-221ENST00000472563 CABP4P57796 275 aa16.11■□□□□ 0.17
SYNE1-221ENST00000472563 AKAP4Q5JQC9 854 aa16.11■□□□□ 0.17
SYNE1-221ENST00000472563 CFAP53Q96M91 514 aa16.11■□□□□ 0.17
SYNE1-221ENST00000472563 PPP2R1AP30153 589 aa16.1■□□□□ 0.17
SYNE1-221ENST00000472563 COL23A1Q86Y22 540 aaPredicted RBP16.1■□□□□ 0.17
SYNE1-221ENST00000472563 ARXQ96QS3 562 aa16.1■□□□□ 0.17
SYNE1-221ENST00000472563 COL3A1P02461 1466 aaPredicted RBP16.1■□□□□ 0.17
SYNE1-221ENST00000472563 LY75O60449 1722 aa16.09■□□□□ 0.17
SYNE1-221ENST00000472563 TOGARAM1Q9Y4F4 1720 aa16.09■□□□□ 0.17
SYNE1-221ENST00000472563 U2SURPO15042 1029 aaKnown RBP16.09■□□□□ 0.17
SYNE1-221ENST00000472563 ATP6V1AP38606 617 aa16.09■□□□□ 0.17
SYNE1-221ENST00000472563 ITPK1Q13572 414 aa16.09■□□□□ 0.17
SYNE1-221ENST00000472563 AK7Q96M32 723 aa16.09■□□□□ 0.17
SYNE1-221ENST00000472563 KAT6BQ8WYB5 2073 aa16.09■□□□□ 0.17
SYNE1-221ENST00000472563 MSH5O43196 834 aa16.08■□□□□ 0.16
SYNE1-221ENST00000472563 POLD1P28340 1107 aa16.08■□□□□ 0.16
SYNE1-221ENST00000472563 MTHFSDQ2M296 383 aaKnown RBP16.08■□□□□ 0.16
SYNE1-221ENST00000472563 NFATC2IPQ8NCF5 419 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms