RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 HSPA5P11021 654 aaKnown RBP11.29□□□□□ -0.6
USP48-207ENST00000471752 GOLGB1Q14789 3259 aaKnown RBP11.29□□□□□ -0.6
USP48-207ENST00000471752 ZCRB1Q8TBF4 217 aaKnown RBP11.28□□□□□ -0.6
USP48-207ENST00000471752 SYTL4Q96C24 671 aaPredicted RBP11.28□□□□□ -0.6
USP48-207ENST00000471752 STK32BQ9NY57 414 aa11.28□□□□□ -0.6
USP48-207ENST00000471752 ABCC6O95255 1503 aa11.28□□□□□ -0.6
USP48-207ENST00000471752 NSD2O96028 1365 aa11.28□□□□□ -0.6
USP48-207ENST00000471752 NINLQ9Y2I6 1382 aa11.28□□□□□ -0.6
USP48-207ENST00000471752 NSD3Q9BZ95 1437 aa11.27□□□□□ -0.6
USP48-207ENST00000471752 RGPD2P0DJD1 1756 aa11.27□□□□□ -0.61
USP48-207ENST00000471752 TNNT2P45379 298 aaPredicted RBP11.27□□□□□ -0.61
USP48-207ENST00000471752 SMIM5Q71RC9 77 aa11.27□□□□□ -0.61
USP48-207ENST00000471752 SGIP1Q9BQI5 828 aa11.27□□□□□ -0.61
USP48-207ENST00000471752 PPM1GO15355 546 aaPredicted RBP11.26□□□□□ -0.61
USP48-207ENST00000471752 CYP27B1O15528 508 aa11.26□□□□□ -0.61
USP48-207ENST00000471752 AKT1S1Q96B36 256 aa11.26□□□□□ -0.61
USP48-207ENST00000471752 PPP1R1BQ9UD71 204 aaPredicted RBP11.26□□□□□ -0.61
USP48-207ENST00000471752 FAM208AQ9UK61 1670 aaKnown RBP11.25□□□□□ -0.61
USP48-207ENST00000471752 POLKQ9UBT6 870 aa11.25□□□□□ -0.61
USP48-207ENST00000471752 KAT6BQ8WYB5 2073 aa11.24□□□□□ -0.61
USP48-207ENST00000471752 CCER1Q8TC90 406 aaPredicted RBP11.24□□□□□ -0.61
USP48-207ENST00000471752 PANK3Q9H999 370 aa11.24□□□□□ -0.61
USP48-207ENST00000471752 TIMELESSQ9UNS1 1208 aa11.24□□□□□ -0.61
USP48-207ENST00000471752 CASZ1Q86V15 1759 aa11.23□□□□□ -0.61
USP48-207ENST00000471752 SLC24A1O60721 1099 aa11.23□□□□□ -0.61
USP48-207ENST00000471752 AMIGO3Q86WK7 504 aa11.23□□□□□ -0.61
USP48-207ENST00000471752 EYA1Q99502 592 aa11.23□□□□□ -0.61
USP48-207ENST00000471752 FHDC1Q9C0D6 1143 aaPredicted RBP11.23□□□□□ -0.61
USP48-207ENST00000471752 INSRP06213 1382 aa11.23□□□□□ -0.61
USP48-207ENST00000471752 NHSQ6T4R5 1651 aa11.23□□□□□ -0.61
USP48-207ENST00000471752 CDCA8Q53HL2 280 aa11.22□□□□□ -0.61
USP48-207ENST00000471752 PNPLA7Q6ZV29 1317 aa11.22□□□□□ -0.61
USP48-207ENST00000471752 SYT17Q9BSW7 474 aa11.22□□□□□ -0.61
USP48-207ENST00000471752 BTAF1O14981 1849 aa11.21□□□□□ -0.61
USP48-207ENST00000471752 MYOM1P52179 1685 aa11.21□□□□□ -0.61
USP48-207ENST00000471752 RTL1A6NKG5 1358 aa11.21□□□□□ -0.61
USP48-207ENST00000471752 TATP17735 454 aaPredicted RBP11.21□□□□□ -0.61
USP48-207ENST00000471752 MPRIPQ6WCQ1 1025 aa11.21□□□□□ -0.61
USP48-207ENST00000471752 RAPGEF4Q8WZA2 1011 aa11.21□□□□□ -0.61
USP48-207ENST00000471752 FLT4P35916 1363 aa11.2□□□□□ -0.62
USP48-207ENST00000471752 WASHC2AQ641Q2 1341 aa11.2□□□□□ -0.62
USP48-207ENST00000471752 EIF4G2P78344 907 aaKnown RBP eCLIP11.2□□□□□ -0.62
USP48-207ENST00000471752 EIF4A2Q14240 407 aaKnown RBP11.2□□□□□ -0.62
USP48-207ENST00000471752 COL23A1Q86Y22 540 aaPredicted RBP11.2□□□□□ -0.62
USP48-207ENST00000471752 MTFR1LQ9H019 292 aa11.2□□□□□ -0.62
USP48-207ENST00000471752 RGPD3A6NKT7 1758 aaPredicted RBP11.2□□□□□ -0.62
USP48-207ENST00000471752 RGPD4Q7Z3J3 1758 aa11.2□□□□□ -0.62
USP48-207ENST00000471752 SHANK3Q9BYB0 1731 aa11.2□□□□□ -0.62
USP48-207ENST00000471752 PAPPAQ13219 1627 aa11.2□□□□□ -0.62
USP48-207ENST00000471752 CLSPNQ9HAW4 1339 aa11.19□□□□□ -0.62
USP48-207ENST00000471752 PIGBQ92521 554 aa11.19□□□□□ -0.62
USP48-207ENST00000471752 TFCP2L1Q9NZI6 479 aa11.19□□□□□ -0.62
USP48-207ENST00000471752 CCNL1Q9UK58 526 aaPredicted RBP11.19□□□□□ -0.62
USP48-207ENST00000471752 YY1P25490 414 aa11.18□□□□□ -0.62
USP48-207ENST00000471752 SLC27A3Q5K4L6 730 aa11.18□□□□□ -0.62
USP48-207ENST00000471752 MSL1Q68DK7 614 aa11.18□□□□□ -0.62
USP48-207ENST00000471752 ARXQ96QS3 562 aa11.18□□□□□ -0.62
USP48-207ENST00000471752 CGNL1Q0VF96 1302 aa11.17□□□□□ -0.62
USP48-207ENST00000471752 AEBP1Q8IUX7 1158 aa11.17□□□□□ -0.62
USP48-207ENST00000471752 NLGN2Q8NFZ4 835 aa11.17□□□□□ -0.62
USP48-207ENST00000471752 NKX1-1Q15270 411 aaPredicted RBP11.16□□□□□ -0.62
USP48-207ENST00000471752 ASAP1Q9ULH1 1129 aa11.16□□□□□ -0.62
USP48-207ENST00000471752 DOT1LQ8TEK3 1739 aa11.15□□□□□ -0.62
USP48-207ENST00000471752 ITPK1Q13572 414 aa11.15□□□□□ -0.62
USP48-207ENST00000471752 KLHL34Q8N239 644 aa11.15□□□□□ -0.62
USP48-207ENST00000471752 SLC4A9Q96Q91 983 aa11.15□□□□□ -0.62
USP48-207ENST00000471752 NCAPD2Q15021 1401 aa11.15□□□□□ -0.62
USP48-207ENST00000471752 KIF20BQ96Q89 1820 aa11.14□□□□□ -0.63
USP48-207ENST00000471752 PCDH11XQ9BZA7 1347 aa11.14□□□□□ -0.63
USP48-207ENST00000471752 PCDH11YQ9BZA8 1340 aa11.14□□□□□ -0.63
USP48-207ENST00000471752 PHKG2P15735 406 aa11.14□□□□□ -0.63
USP48-207ENST00000471752 LINC00116Q8NCU8 138 aa11.14□□□□□ -0.63
USP48-207ENST00000471752 SMG6Q86US8 1419 aaKnown RBP11.14□□□□□ -0.63
USP48-207ENST00000471752 KIF24Q5T7B8 1368 aa11.14□□□□□ -0.63
USP48-207ENST00000471752 PALLDQ8WX93 1383 aa11.14□□□□□ -0.63
USP48-207ENST00000471752 KIF7Q2M1P5 1343 aa11.13□□□□□ -0.63
USP48-207ENST00000471752 CNGB1Q14028 1251 aaPredicted RBP11.13□□□□□ -0.63
USP48-207ENST00000471752 MORC1Q86VD1 984 aa11.13□□□□□ -0.63
USP48-207ENST00000471752 ATG3Q9NT62 314 aa11.13□□□□□ -0.63
USP48-207ENST00000471752 TOGARAM1Q9Y4F4 1720 aa11.12□□□□□ -0.63
USP48-207ENST00000471752 KCNA4P22459 653 aa11.12□□□□□ -0.63
USP48-207ENST00000471752 AMER1Q5JTC6 1135 aaPredicted RBP11.12□□□□□ -0.63
USP48-207ENST00000471752 SPG7Q9UQ90 795 aa11.12□□□□□ -0.63
USP48-207ENST00000471752 PER1O15534 1290 aaPredicted RBP11.11□□□□□ -0.63
USP48-207ENST00000471752 PHF14O94880 888 aa11.11□□□□□ -0.63
USP48-207ENST00000471752 SLC16A10Q8TF71 515 aa11.11□□□□□ -0.63
USP48-207ENST00000471752 WWC3Q9ULE0 1092 aa11.11□□□□□ -0.63
USP48-207ENST00000471752 MAP2P11137 1827 aaKnown RBP11.11□□□□□ -0.63
USP48-207ENST00000471752 IGSF1Q8N6C5 1336 aa11.1□□□□□ -0.63
USP48-207ENST00000471752 LY75O60449 1722 aa11.1□□□□□ -0.63
USP48-207ENST00000471752 TUBGCP6Q96RT7 1819 aa11.1□□□□□ -0.63
USP48-207ENST00000471752 LOC102724428A0A0B4J2F2 783 aa11.1□□□□□ -0.63
USP48-207ENST00000471752 YBX3P16989 372 aaKnown RBP eCLIP11.1□□□□□ -0.63
USP48-207ENST00000471752 IL13P35225 146 aa11.1□□□□□ -0.63
USP48-207ENST00000471752 SIK1P57059 783 aa11.1□□□□□ -0.63
USP48-207ENST00000471752 IFNL2Q8IZJ0 200 aa11.1□□□□□ -0.63
USP48-207ENST00000471752 PELP1Q8IZL8 1130 aaKnown RBP11.1□□□□□ -0.63
USP48-207ENST00000471752 ZNF784Q8NCA9 323 aaPredicted RBP11.09□□□□□ -0.63
USP48-207ENST00000471752 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.09□□□□□ -0.634e-8■■■■■ 30.4
USP48-207ENST00000471752 TMOD3Q9NYL9 352 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms