RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 DDX54Q8TDD1 881 aaKnown RBP20.61■□□□□ 0.89
SDC3-203ENST00000471567 CFAP53Q96M91 514 aa20.61■□□□□ 0.89
SDC3-203ENST00000471567 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.61■□□□□ 0.89
SDC3-203ENST00000471567 RGPD1P0DJD0 1748 aa20.61■□□□□ 0.89
SDC3-203ENST00000471567 RALBP1Q15311 655 aa20.6■□□□□ 0.89
SDC3-203ENST00000471567 BAG6P46379 1132 aa20.59■□□□□ 0.89
SDC3-203ENST00000471567 PCDH11XQ9BZA7 1347 aa20.58■□□□□ 0.89
SDC3-203ENST00000471567 PCDH11YQ9BZA8 1340 aa20.58■□□□□ 0.89
SDC3-203ENST00000471567 BCL11BQ9C0K0 894 aaPredicted RBP20.58■□□□□ 0.89
SDC3-203ENST00000471567 SPG7Q9UQ90 795 aa20.58■□□□□ 0.89
SDC3-203ENST00000471567 COL3A1P02461 1466 aaPredicted RBP20.57■□□□□ 0.88
SDC3-203ENST00000471567 KDRP35968 1356 aa20.57■□□□□ 0.88
SDC3-203ENST00000471567 SULT6B1Q6IMI4 303 aa20.56■□□□□ 0.88
SDC3-203ENST00000471567 DEFB132Q7Z7B7 95 aa20.56■□□□□ 0.88
SDC3-203ENST00000471567 SBF2Q86WG5 1849 aa20.55■□□□□ 0.88
SDC3-203ENST00000471567 APBA3O96018 575 aa20.55■□□□□ 0.88
SDC3-203ENST00000471567 AEBP1Q8IUX7 1158 aa20.55■□□□□ 0.88
SDC3-203ENST00000471567 PKD1L3Q7Z443 1732 aa20.55■□□□□ 0.88
SDC3-203ENST00000471567 SHANK3Q9BYB0 1731 aa20.55■□□□□ 0.88
SDC3-203ENST00000471567 TNS1Q9HBL0 1735 aaKnown RBP20.55■□□□□ 0.88
SDC3-203ENST00000471567 CYP27B1O15528 508 aa20.53■□□□□ 0.88
SDC3-203ENST00000471567 AMOTQ4VCS5 1084 aa20.53■□□□□ 0.88
SDC3-203ENST00000471567 PLEKHO1Q53GL0 409 aaPredicted RBP20.53■□□□□ 0.88
SDC3-203ENST00000471567 NUDCQ9Y266 331 aa20.53■□□□□ 0.88
SDC3-203ENST00000471567 U2SURPO15042 1029 aaKnown RBP20.51■□□□□ 0.87
SDC3-203ENST00000471567 EN1Q05925 392 aaPredicted RBP20.51■□□□□ 0.87
SDC3-203ENST00000471567 NKX1-1Q15270 411 aaPredicted RBP20.51■□□□□ 0.87
SDC3-203ENST00000471567 ACSBG1Q96GR2 724 aa20.51■□□□□ 0.87
SDC3-203ENST00000471567 PLSCR1O15162 318 aa20.5■□□□□ 0.87
SDC3-203ENST00000471567 KCNQ2O43526 872 aa20.5■□□□□ 0.87
SDC3-203ENST00000471567 PTF1AQ7RTS3 328 aa20.5■□□□□ 0.87
SDC3-203ENST00000471567 IFNL2Q8IZJ0 200 aa20.5■□□□□ 0.87
SDC3-203ENST00000471567 CAMKK2Q96RR4 588 aa20.5■□□□□ 0.87
SDC3-203ENST00000471567 NHSQ6T4R5 1651 aa20.49■□□□□ 0.87
SDC3-203ENST00000471567 HMOX1P09601 288 aa20.49■□□□□ 0.87
SDC3-203ENST00000471567 MYBBP1AQ9BQG0 1328 aaKnown RBP20.49■□□□□ 0.87
SDC3-203ENST00000471567 PHKG2P15735 406 aa20.48■□□□□ 0.87
SDC3-203ENST00000471567 PRKRIP1Q9H875 184 aaPredicted RBP20.48■□□□□ 0.87
SDC3-203ENST00000471567 PRIM1P49642 420 aaKnown RBP20.47■□□□□ 0.87
SDC3-203ENST00000471567 EZH2Q15910 746 aaKnown RBP20.47■□□□□ 0.87
SDC3-203ENST00000471567 KAT6BQ8WYB5 2073 aa20.46■□□□□ 0.87
SDC3-203ENST00000471567 HSP90AB1P08238 724 aaKnown RBP20.46■□□□□ 0.87
SDC3-203ENST00000471567 ZNF530Q6P9A1 599 aaPredicted RBP20.46■□□□□ 0.87
SDC3-203ENST00000471567 U2AF1L5P0DN76 240 aaPredicted RBP20.44■□□□□ 0.86
SDC3-203ENST00000471567 U2AF1Q01081 240 aaKnown RBP eCLIP20.44■□□□□ 0.86
SDC3-203ENST00000471567 SYTL4Q96C24 671 aaPredicted RBP20.44■□□□□ 0.86
SDC3-203ENST00000471567 DOT1LQ8TEK3 1739 aa20.44■□□□□ 0.86
SDC3-203ENST00000471567 RGPD3A6NKT7 1758 aaPredicted RBP20.44■□□□□ 0.86
SDC3-203ENST00000471567 RGPD4Q7Z3J3 1758 aa20.44■□□□□ 0.86
SDC3-203ENST00000471567 FCHSD2O94868 740 aa20.43■□□□□ 0.86
SDC3-203ENST00000471567 C1orf141Q5JVX7 400 aa20.43■□□□□ 0.86
SDC3-203ENST00000471567 DCAF5Q96JK2 942 aa20.42■□□□□ 0.86
SDC3-203ENST00000471567 RSPH6AQ9H0K4 717 aa20.42■□□□□ 0.86
SDC3-203ENST00000471567 AKAP4Q5JQC9 854 aa20.41■□□□□ 0.86
SDC3-203ENST00000471567 BTAF1O14981 1849 aa20.41■□□□□ 0.86
SDC3-203ENST00000471567 ERVV-2B6SEH9 535 aa20.4■□□□□ 0.86
SDC3-203ENST00000471567 MTHFSDQ2M296 383 aaKnown RBP20.4■□□□□ 0.86
SDC3-203ENST00000471567 PRKAR2BP31323 418 aa20.39■□□□□ 0.85
SDC3-203ENST00000471567 TXNRD1Q16881 649 aa20.39■□□□□ 0.85
SDC3-203ENST00000471567 PROM2Q8N271 834 aa20.39■□□□□ 0.85
SDC3-203ENST00000471567 RREB1Q92766 1687 aa20.38■□□□□ 0.85
SDC3-203ENST00000471567 MPRIPQ6WCQ1 1025 aa20.38■□□□□ 0.85
SDC3-203ENST00000471567 GAS2L2Q8NHY3 880 aa20.38■□□□□ 0.85
SDC3-203ENST00000471567 TOGARAM1Q9Y4F4 1720 aa20.38■□□□□ 0.85
SDC3-203ENST00000471567 PIGBQ92521 554 aa20.37■□□□□ 0.85
SDC3-203ENST00000471567 TMOD3Q9NYL9 352 aa20.37■□□□□ 0.85
SDC3-203ENST00000471567 NBPF14Q5TI25 921 aa20.36■□□□□ 0.85
SDC3-203ENST00000471567 PNNQ9H307 717 aaKnown RBP20.36■□□□□ 0.85
SDC3-203ENST00000471567 KDM6AO15550 1401 aaPredicted RBP20.36■□□□□ 0.85
SDC3-203ENST00000471567 ITGB4P16144 1822 aa20.35■□□□□ 0.85
SDC3-203ENST00000471567 ANP32CO43423 234 aa20.35■□□□□ 0.85
SDC3-203ENST00000471567 SLC27A3Q5K4L6 730 aa20.35■□□□□ 0.85
SDC3-203ENST00000471567 SMARCC1Q92922 1105 aaPredicted RBP20.35■□□□□ 0.85
SDC3-203ENST00000471567 PHACTR3Q96KR7 559 aa20.35■□□□□ 0.85
SDC3-203ENST00000471567 NUP188Q5SRE5 1749 aa20.33■□□□□ 0.85
SDC3-203ENST00000471567 NEFMP07197 916 aa20.33■□□□□ 0.85
SDC3-203ENST00000471567 CABP4P57796 275 aa20.33■□□□□ 0.85
SDC3-203ENST00000471567 GNAT3A8MTJ3 354 aa20.32■□□□□ 0.84
SDC3-203ENST00000471567 RNMTO43148 476 aaKnown RBP20.32■□□□□ 0.84
SDC3-203ENST00000471567 HMGB2P26583 209 aaKnown RBP20.31■□□□□ 0.84
SDC3-203ENST00000471567 PLEKHF1Q96S99 279 aa20.31■□□□□ 0.84
SDC3-203ENST00000471567 PALLDQ8WX93 1383 aa20.31■□□□□ 0.84
SDC3-203ENST00000471567 MAP3K5Q99683 1374 aa20.31■□□□□ 0.84
SDC3-203ENST00000471567 LGR6Q9HBX8 967 aa20.3■□□□□ 0.84
SDC3-203ENST00000471567 LY75O60449 1722 aa20.3■□□□□ 0.84
SDC3-203ENST00000471567 SCN11AQ9UI33 1791 aa20.29■□□□□ 0.84
SDC3-203ENST00000471567 WDR43Q15061 677 aaKnown RBP eCLIP20.29■□□□□ 0.84
SDC3-203ENST00000471567 NFATC2IPQ8NCF5 419 aa20.29■□□□□ 0.84
SDC3-203ENST00000471567 SLC52A2Q9HAB3 445 aa20.29■□□□□ 0.84
SDC3-203ENST00000471567 LRRC4BQ9NT99 713 aa20.29■□□□□ 0.84
SDC3-203ENST00000471567 ATG3Q9NT62 314 aa20.28■□□□□ 0.84
SDC3-203ENST00000471567 CCNL1Q9UK58 526 aaPredicted RBP20.28■□□□□ 0.84
SDC3-203ENST00000471567 ASAP1Q9ULH1 1129 aa20.28■□□□□ 0.84
SDC3-203ENST00000471567 ADAMTS7Q9UKP4 1686 aa20.28■□□□□ 0.84
SDC3-203ENST00000471567 HTATSF1O43719 755 aaKnown RBP20.27■□□□□ 0.84
SDC3-203ENST00000471567 R3HDM1Q15032 1099 aaKnown RBP20.27■□□□□ 0.84
SDC3-203ENST00000471567 STK32BQ9NY57 414 aa20.27■□□□□ 0.84
SDC3-203ENST00000471567 MAPK8IP3Q9UPT6 1336 aa20.27■□□□□ 0.83
SDC3-203ENST00000471567 MRC1P22897 1456 aa20.26■□□□□ 0.83
SDC3-203ENST00000471567 IL17REQ8NFR9 667 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms