RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 IL17REQ8NFR9 667 aa13.17□□□□□ -0.3
SF3A1-207ENST00000471342 GJD4Q96KN9 370 aaPredicted RBP13.17□□□□□ -0.3
SF3A1-207ENST00000471342 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.17□□□□□ -0.3
SF3A1-207ENST00000471342 RRP7AQ9Y3A4 280 aaKnown RBP13.17□□□□□ -0.3
SF3A1-207ENST00000471342 THSD7AQ9UPZ6 1657 aa13.17□□□□□ -0.3
SF3A1-207ENST00000471342 ADAMTS7Q9UKP4 1686 aa13.16□□□□□ -0.3
SF3A1-207ENST00000471342 NFE2L2Q16236 605 aa13.16□□□□□ -0.3
SF3A1-207ENST00000471342 CCDC27Q2M243 656 aa13.16□□□□□ -0.3
SF3A1-207ENST00000471342 TRMT2AQ8IZ69 625 aaKnown RBP13.16□□□□□ -0.3
SF3A1-207ENST00000471342 THRAP3Q9Y2W1 955 aaKnown RBP13.16□□□□□ -0.3
SF3A1-207ENST00000471342 PKD1L3Q7Z443 1732 aa13.16□□□□□ -0.3
SF3A1-207ENST00000471342 KDM6AO15550 1401 aaPredicted RBP13.15□□□□□ -0.3
SF3A1-207ENST00000471342 EVA1CP58658 441 aa13.15□□□□□ -0.3
SF3A1-207ENST00000471342 NKX1-1Q15270 411 aaPredicted RBP13.15□□□□□ -0.3
SF3A1-207ENST00000471342 WWC1Q8IX03 1113 aa13.15□□□□□ -0.3
SF3A1-207ENST00000471342 CEMIPQ8WUJ3 1361 aa13.15□□□□□ -0.3
SF3A1-207ENST00000471342 CSB-PGBD3P0DP91 1061 aa13.14□□□□□ -0.31
SF3A1-207ENST00000471342 IL2RBP14784 551 aa13.14□□□□□ -0.31
SF3A1-207ENST00000471342 QTRT2Q9H974 415 aaKnown RBP13.14□□□□□ -0.31
SF3A1-207ENST00000471342 LGR6Q9HBX8 967 aa13.14□□□□□ -0.31
SF3A1-207ENST00000471342 ZNF853P0CG23 659 aa13.13□□□□□ -0.31
SF3A1-207ENST00000471342 PHKG2P15735 406 aa13.13□□□□□ -0.31
SF3A1-207ENST00000471342 DCTN1Q14203 1278 aa13.13□□□□□ -0.31
SF3A1-207ENST00000471342 MARCH10Q8NA82 808 aaPredicted RBP13.13□□□□□ -0.31
SF3A1-207ENST00000471342 THUMPD2Q9BTF0 503 aaKnown RBP13.13□□□□□ -0.31
SF3A1-207ENST00000471342 USP35Q9P2H5 1018 aa13.13□□□□□ -0.31
SF3A1-207ENST00000471342 TRPC5Q9UL62 973 aaPredicted RBP13.13□□□□□ -0.31
SF3A1-207ENST00000471342 WNK3Q9BYP7 1800 aa13.12□□□□□ -0.31
SF3A1-207ENST00000471342 CDCA7LQ96GN5 454 aa13.12□□□□□ -0.31
SF3A1-207ENST00000471342 LRRC37A3O60309 1634 aa13.11□□□□□ -0.31
SF3A1-207ENST00000471342 TATP17735 454 aaPredicted RBP13.11□□□□□ -0.31
SF3A1-207ENST00000471342 FAM98CQ17RN3 349 aaKnown RBP13.11□□□□□ -0.31
SF3A1-207ENST00000471342 ZCRB1Q8TBF4 217 aaKnown RBP13.11□□□□□ -0.31
SF3A1-207ENST00000471342 TNS2Q63HR2 1409 aa13.11□□□□□ -0.31
SF3A1-207ENST00000471342 ZBED9Q6R2W3 1325 aa13.11□□□□□ -0.31
SF3A1-207ENST00000471342 RIPK4P57078 832 aa13.1□□□□□ -0.31
SF3A1-207ENST00000471342 AMOTQ4VCS5 1084 aa13.1□□□□□ -0.31
SF3A1-207ENST00000471342 MEX3CQ5U5Q3 659 aaKnown RBP13.1□□□□□ -0.31
SF3A1-207ENST00000471342 PARP4Q9UKK3 1724 aaKnown RBP13.1□□□□□ -0.31
SF3A1-207ENST00000471342 HTATSF1O43719 755 aaKnown RBP13.09□□□□□ -0.31
SF3A1-207ENST00000471342 HNRNPUQ00839 825 aaKnown RBP eCLIP13.09□□□□□ -0.31
SF3A1-207ENST00000471342 PLEKHO1Q53GL0 409 aaPredicted RBP13.09□□□□□ -0.31
SF3A1-207ENST00000471342 AKAP4Q5JQC9 854 aa13.09□□□□□ -0.31
SF3A1-207ENST00000471342 MCM10Q7L590 875 aa13.09□□□□□ -0.31
SF3A1-207ENST00000471342 RAPGEF4Q8WZA2 1011 aa13.09□□□□□ -0.31
SF3A1-207ENST00000471342 MAP3K5Q99683 1374 aa13.08□□□□□ -0.31
SF3A1-207ENST00000471342 BCL9O00512 1426 aa13.08□□□□□ -0.32
SF3A1-207ENST00000471342 RNMTO43148 476 aaKnown RBP13.08□□□□□ -0.32
SF3A1-207ENST00000471342 ZNF530Q6P9A1 599 aaPredicted RBP13.08□□□□□ -0.32
SF3A1-207ENST00000471342 PTF1AQ7RTS3 328 aa13.08□□□□□ -0.32
SF3A1-207ENST00000471342 GAS2L2Q8NHY3 880 aa13.08□□□□□ -0.32
SF3A1-207ENST00000471342 SALL2Q9Y467 1007 aaPredicted RBP13.08□□□□□ -0.32
SF3A1-207ENST00000471342 MRC1P22897 1456 aa13.08□□□□□ -0.32
SF3A1-207ENST00000471342 RGS12O14924 1447 aa13.07□□□□□ -0.32
SF3A1-207ENST00000471342 CHL1O00533 1208 aa13.07□□□□□ -0.32
SF3A1-207ENST00000471342 SLFN5Q08AF3 891 aa13.07□□□□□ -0.32
SF3A1-207ENST00000471342 NEUROD2Q15784 382 aa13.07□□□□□ -0.32
SF3A1-207ENST00000471342 DUSP27Q5VZP5 1158 aa13.07□□□□□ -0.32
SF3A1-207ENST00000471342 ZNF772Q68DY9 489 aaPredicted RBP13.07□□□□□ -0.32
SF3A1-207ENST00000471342 CDCA7Q9BWT1 371 aaPredicted RBP13.07□□□□□ -0.32
SF3A1-207ENST00000471342 DLG5Q8TDM6 1919 aa13.06□□□□□ -0.32
SF3A1-207ENST00000471342 TOGARAM1Q9Y4F4 1720 aa13.06□□□□□ -0.32
SF3A1-207ENST00000471342 GNAT3A8MTJ3 354 aa13.06□□□□□ -0.32
SF3A1-207ENST00000471342 RBM6P78332 1123 aaKnown RBP13.06□□□□□ -0.32
SF3A1-207ENST00000471342 MPRIPQ6WCQ1 1025 aa13.06□□□□□ -0.32
SF3A1-207ENST00000471342 WDR63Q8IWG1 891 aa13.06□□□□□ -0.32
SF3A1-207ENST00000471342 SEPT12Q8IYM1 358 aa13.06□□□□□ -0.32
SF3A1-207ENST00000471342 NGEFQ8N5V2 710 aa13.06□□□□□ -0.32
SF3A1-207ENST00000471342 PNNQ9H307 717 aaKnown RBP13.06□□□□□ -0.32
SF3A1-207ENST00000471342 HEG1Q9ULI3 1381 aa13.06□□□□□ -0.32
SF3A1-207ENST00000471342 EXOC5O00471 708 aa13.05□□□□□ -0.32
SF3A1-207ENST00000471342 KCNQ3O43525 872 aa13.05□□□□□ -0.32
SF3A1-207ENST00000471342 IFNL2Q8IZJ0 200 aa13.05□□□□□ -0.32
SF3A1-207ENST00000471342 SPG7Q9UQ90 795 aa13.05□□□□□ -0.32
SF3A1-207ENST00000471342 YTHDC1Q96MU7 727 aaKnown RBP13.04□□□□□ -0.32
SF3A1-207ENST00000471342 IL16Q14005 1332 aa13.04□□□□□ -0.32
SF3A1-207ENST00000471342 PCDH11XQ9BZA7 1347 aa13.04□□□□□ -0.32
SF3A1-207ENST00000471342 PCDH11YQ9BZA8 1340 aa13.04□□□□□ -0.32
SF3A1-207ENST00000471342 MAPK8IP3Q9UPT6 1336 aa13.04□□□□□ -0.32
SF3A1-207ENST00000471342 DDB1Q16531 1140 aa13.03□□□□□ -0.32
SF3A1-207ENST00000471342 FAM182BQ5T319 152 aa13.03□□□□□ -0.32
SF3A1-207ENST00000471342 DDX54Q8TDD1 881 aaKnown RBP13.03□□□□□ -0.32
SF3A1-207ENST00000471342 DCAF5Q96JK2 942 aa13.03□□□□□ -0.32
SF3A1-207ENST00000471342 SIPA1L3O60292 1781 aaPredicted RBP13.02□□□□□ -0.32
SF3A1-207ENST00000471342 KCNQ2O43526 872 aa13.02□□□□□ -0.33
SF3A1-207ENST00000471342 MIS18AQ9NYP9 233 aa13.02□□□□□ -0.33
SF3A1-207ENST00000471342 EP400Q96L91 3159 aa13.02□□□□□ -0.33
SF3A1-207ENST00000471342 KRT24Q2M2I5 525 aa13.01□□□□□ -0.33
SF3A1-207ENST00000471342 PIGBQ92521 554 aa13.01□□□□□ -0.33
SF3A1-207ENST00000471342 CFAP44Q96MT7 982 aa13.01□□□□□ -0.33
SF3A1-207ENST00000471342 SLC4A9Q96Q91 983 aa13.01□□□□□ -0.33
SF3A1-207ENST00000471342 SLC52A2Q9HAB3 445 aa13.01□□□□□ -0.33
SF3A1-207ENST00000471342 MBIPQ9NS73 344 aa13.01□□□□□ -0.33
SF3A1-207ENST00000471342 CCDC9Q9Y3X0 531 aaKnown RBP13.01□□□□□ -0.33
SF3A1-207ENST00000471342 ERVV-2B6SEH9 535 aa13□□□□□ -0.33
SF3A1-207ENST00000471342 RXRBP28702 533 aa13□□□□□ -0.33
SF3A1-207ENST00000471342 TSR2Q969E8 191 aaKnown RBP13□□□□□ -0.33
SF3A1-207ENST00000471342 SCN11AQ9UI33 1791 aa12.99□□□□□ -0.33
SF3A1-207ENST00000471342 FANCIQ9NVI1 1328 aa12.99□□□□□ -0.33
SF3A1-207ENST00000471342 GOLGA2Q08379 1002 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms