RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 THUMPD2Q9BTF0 503 aaKnown RBP12.16□□□□□ -0.46
VPS52-216ENST00000471309 CRB1P82279 1406 aa12.16□□□□□ -0.46
VPS52-216ENST00000471309 ADAMTS7Q9UKP4 1686 aa12.16□□□□□ -0.46
VPS52-216ENST00000471309 PKD1L3Q7Z443 1732 aa12.15□□□□□ -0.46
VPS52-216ENST00000471309 PARP4Q9UKK3 1724 aaKnown RBP12.15□□□□□ -0.46
VPS52-216ENST00000471309 FAM83GA6ND36 823 aa12.15□□□□□ -0.46
VPS52-216ENST00000471309 LRRC59Q96AG4 307 aaKnown RBP12.15□□□□□ -0.46
VPS52-216ENST00000471309 PPP4R2Q9NY27 417 aa12.15□□□□□ -0.46
VPS52-216ENST00000471309 COL14A1Q05707 1796 aaKnown RBP12.15□□□□□ -0.46
VPS52-216ENST00000471309 COL5A2P05997 1499 aaPredicted RBP12.14□□□□□ -0.47
VPS52-216ENST00000471309 OVOS2A0A0G2JMS6 1433 aa12.14□□□□□ -0.47
VPS52-216ENST00000471309 RARSP54136 660 aaKnown RBP12.14□□□□□ -0.47
VPS52-216ENST00000471309 EXOSC9Q06265 439 aaKnown RBP12.14□□□□□ -0.47
VPS52-216ENST00000471309 GNAT3A8MTJ3 354 aa12.13□□□□□ -0.47
VPS52-216ENST00000471309 RTF1Q92541 710 aaKnown RBP12.13□□□□□ -0.47
VPS52-216ENST00000471309 ZNF428Q96B54 188 aa12.13□□□□□ -0.47
VPS52-216ENST00000471309 PRDM11Q9NQV5 511 aa12.13□□□□□ -0.47
VPS52-216ENST00000471309 MBIPQ9NS73 344 aa12.13□□□□□ -0.47
VPS52-216ENST00000471309 VIRMAQ69YN4 1812 aaKnown RBP12.12□□□□□ -0.47
VPS52-216ENST00000471309 BCAR3O75815 825 aa12.12□□□□□ -0.47
VPS52-216ENST00000471309 HAP1P54257 671 aaPredicted RBP12.12□□□□□ -0.47
VPS52-216ENST00000471309 DCTN1Q14203 1278 aa12.12□□□□□ -0.47
VPS52-216ENST00000471309 CHRNA2Q15822 529 aa12.12□□□□□ -0.47
VPS52-216ENST00000471309 AMOTQ4VCS5 1084 aa12.12□□□□□ -0.47
VPS52-216ENST00000471309 MCM10Q7L590 875 aa12.12□□□□□ -0.47
VPS52-216ENST00000471309 LAS1LQ9Y4W2 734 aaKnown RBP12.12□□□□□ -0.47
VPS52-216ENST00000471309 MEGF6O75095 1541 aa12.11□□□□□ -0.47
VPS52-216ENST00000471309 KDM3BQ7LBC6 1761 aa12.11□□□□□ -0.47
VPS52-216ENST00000471309 CEMIPQ8WUJ3 1361 aa12.11□□□□□ -0.47
VPS52-216ENST00000471309 CHL1O00533 1208 aa12.11□□□□□ -0.47
VPS52-216ENST00000471309 PLIN1O60240 522 aa12.11□□□□□ -0.47
VPS52-216ENST00000471309 TOM1O60784 492 aa12.11□□□□□ -0.47
VPS52-216ENST00000471309 PLEKHO1Q53GL0 409 aaPredicted RBP12.11□□□□□ -0.47
VPS52-216ENST00000471309 WDR17Q8IZU2 1322 aa12.11□□□□□ -0.47
VPS52-216ENST00000471309 PLCH1Q4KWH8 1693 aa12.1□□□□□ -0.47
VPS52-216ENST00000471309 NLRP2Q9NX02 1062 aa12.1□□□□□ -0.47
VPS52-216ENST00000471309 SIPA1L3O60292 1781 aaPredicted RBP12.1□□□□□ -0.47
VPS52-216ENST00000471309 CSB-PGBD3P0DP91 1061 aa12.09□□□□□ -0.47
VPS52-216ENST00000471309 PDE3AQ14432 1141 aa12.09□□□□□ -0.47
VPS52-216ENST00000471309 ALDH1L2Q3SY69 923 aa12.09□□□□□ -0.47
VPS52-216ENST00000471309 AKAP4Q5JQC9 854 aa12.09□□□□□ -0.47
VPS52-216ENST00000471309 BABAM1Q9NWV8 329 aa12.09□□□□□ -0.47
VPS52-216ENST00000471309 SCN11AQ9UI33 1791 aa12.08□□□□□ -0.48
VPS52-216ENST00000471309 CANXP27824 592 aaKnown RBP12.08□□□□□ -0.48
VPS52-216ENST00000471309 C20orf194Q5TEA3 1177 aa12.08□□□□□ -0.48
VPS52-216ENST00000471309 ZNF530Q6P9A1 599 aaPredicted RBP12.08□□□□□ -0.48
VPS52-216ENST00000471309 EXOC6Q8TAG9 804 aa12.08□□□□□ -0.48
VPS52-216ENST00000471309 RAPGEF4Q8WZA2 1011 aa12.08□□□□□ -0.48
VPS52-216ENST00000471309 CRBNQ96SW2 442 aa12.08□□□□□ -0.48
VPS52-216ENST00000471309 SMC4Q9NTJ3 1288 aa12.08□□□□□ -0.48
VPS52-216ENST00000471309 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.08□□□□□ -0.483e-8■■■□□ 17.5
VPS52-216ENST00000471309 KIF16BQ96L93 1317 aa12.08□□□□□ -0.48
VPS52-216ENST00000471309 WNK3Q9BYP7 1800 aa12.07□□□□□ -0.48
VPS52-216ENST00000471309 VAMP4O75379 141 aa12.07□□□□□ -0.48
VPS52-216ENST00000471309 TATP17735 454 aaPredicted RBP12.07□□□□□ -0.48
VPS52-216ENST00000471309 BRPF1P55201 1214 aaPredicted RBP12.07□□□□□ -0.48
VPS52-216ENST00000471309 TWISTNBQ3B726 338 aaPredicted RBP12.07□□□□□ -0.48
VPS52-216ENST00000471309 C1orf141Q5JVX7 400 aa12.07□□□□□ -0.48
VPS52-216ENST00000471309 NRAPQ86VF7 1730 aa12.07□□□□□ -0.48
VPS52-216ENST00000471309 IL17REQ8NFR9 667 aa12.07□□□□□ -0.48
VPS52-216ENST00000471309 SSH1Q8WYL5 1049 aa12.07□□□□□ -0.48
VPS52-216ENST00000471309 MRC1P22897 1456 aa12.07□□□□□ -0.48
VPS52-216ENST00000471309 SHANK3Q9BYB0 1731 aa12.06□□□□□ -0.48
VPS52-216ENST00000471309 ZKSCAN2Q63HK3 967 aa12.06□□□□□ -0.48
VPS52-216ENST00000471309 FRAT1Q92837 279 aaPredicted RBP12.06□□□□□ -0.48
VPS52-216ENST00000471309 BCL2L13Q9BXK5 485 aa12.06□□□□□ -0.48
VPS52-216ENST00000471309 TSPYL4Q9UJ04 414 aa12.06□□□□□ -0.48
VPS52-216ENST00000471309 SOS1Q07889 1333 aaPredicted RBP12.06□□□□□ -0.48
VPS52-216ENST00000471309 NWD2Q9ULI1 1742 aa12.06□□□□□ -0.48
VPS52-216ENST00000471309 MS4A1P11836 297 aa12.05□□□□□ -0.48
VPS52-216ENST00000471309 PELP1Q8IZL8 1130 aaKnown RBP12.05□□□□□ -0.48
VPS52-216ENST00000471309 TSPYL6Q8N831 410 aa12.05□□□□□ -0.48
VPS52-216ENST00000471309 C8orf58Q8NAV2 365 aa12.05□□□□□ -0.48
VPS52-216ENST00000471309 SPG7Q9UQ90 795 aa12.05□□□□□ -0.48
VPS52-216ENST00000471309 TAF7Q15545 349 aaPredicted RBP12.04□□□□□ -0.48
VPS52-216ENST00000471309 B4GALNT3Q6L9W6 998 aa12.04□□□□□ -0.48
VPS52-216ENST00000471309 TOM1L2Q6ZVM7 507 aa12.04□□□□□ -0.48
VPS52-216ENST00000471309 CCDC136Q96JN2 1154 aa12.04□□□□□ -0.48
VPS52-216ENST00000471309 CARD10Q9BWT7 1032 aa12.04□□□□□ -0.48
VPS52-216ENST00000471309 KDM6AO15550 1401 aaPredicted RBP12.03□□□□□ -0.48
VPS52-216ENST00000471309 UBAP1LF5GYI3 381 aa12.03□□□□□ -0.48
VPS52-216ENST00000471309 PIP4K2BP78356 416 aa12.03□□□□□ -0.48
VPS52-216ENST00000471309 IPO8O15397 1037 aaKnown RBP12.02□□□□□ -0.49
VPS52-216ENST00000471309 RNMTO43148 476 aaKnown RBP12.02□□□□□ -0.49
VPS52-216ENST00000471309 PHKG2P15735 406 aa12.02□□□□□ -0.49
VPS52-216ENST00000471309 AAMPQ13685 434 aa12.02□□□□□ -0.49
VPS52-216ENST00000471309 ATF7IPQ6VMQ6 1270 aa12.02□□□□□ -0.49
VPS52-216ENST00000471309 MRPL50Q8N5N7 158 aaKnown RBP12.02□□□□□ -0.49
VPS52-216ENST00000471309 ARHGAP45Q92619 1136 aa12.02□□□□□ -0.49
VPS52-216ENST00000471309 LGR6Q9HBX8 967 aa12.02□□□□□ -0.49
VPS52-216ENST00000471309 ELL2O00472 640 aaPredicted RBP12.01□□□□□ -0.49
VPS52-216ENST00000471309 TRIM27P14373 513 aa12.01□□□□□ -0.49
VPS52-216ENST00000471309 TEFQ10587 303 aa12.01□□□□□ -0.49
VPS52-216ENST00000471309 LARP1Q6PKG0 1096 aaKnown RBP12.01□□□□□ -0.49
VPS52-216ENST00000471309 MPRIPQ6WCQ1 1025 aa12.01□□□□□ -0.49
VPS52-216ENST00000471309 IFNL2Q8IZJ0 200 aa12.01□□□□□ -0.49
VPS52-216ENST00000471309 PANK1Q8TE04 598 aa12.01□□□□□ -0.49
VPS52-216ENST00000471309 STRN4Q9NRL3 753 aa12.01□□□□□ -0.49
VPS52-216ENST00000471309 BTG4Q9NY30 223 aa12.01□□□□□ -0.49
VPS52-216ENST00000471309 MIS18AQ9NYP9 233 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms