RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 TATP17735 454 aaPredicted RBP21.46■■□□□ 1.03
HDAC6-218ENST00000470942 NHSQ6T4R5 1651 aa21.45■■□□□ 1.02
HDAC6-218ENST00000470942 NUP188Q5SRE5 1749 aa21.45■■□□□ 1.02
HDAC6-218ENST00000470942 R3HDM1Q15032 1099 aaKnown RBP21.44■■□□□ 1.02
HDAC6-218ENST00000470942 RGPD3A6NKT7 1758 aaPredicted RBP21.43■■□□□ 1.02
HDAC6-218ENST00000470942 RGPD4Q7Z3J3 1758 aa21.43■■□□□ 1.02
HDAC6-218ENST00000470942 NBPF14Q5TI25 921 aa21.43■■□□□ 1.02
HDAC6-218ENST00000470942 SHANK3Q9BYB0 1731 aa21.43■■□□□ 1.02
HDAC6-218ENST00000470942 AMER1Q5JTC6 1135 aaPredicted RBP21.42■■□□□ 1.02
HDAC6-218ENST00000470942 EYA1Q99502 592 aa21.41■■□□□ 1.02
HDAC6-218ENST00000470942 EIF4A2Q14240 407 aaKnown RBP21.4■■□□□ 1.02
HDAC6-218ENST00000470942 BTAF1O14981 1849 aa21.4■■□□□ 1.02
HDAC6-218ENST00000470942 PER1O15534 1290 aaPredicted RBP21.39■■□□□ 1.01
HDAC6-218ENST00000470942 CC2D1BQ5T0F9 858 aaKnown RBP21.38■■□□□ 1.01
HDAC6-218ENST00000470942 SYTL4Q96C24 671 aaPredicted RBP21.38■■□□□ 1.01
HDAC6-218ENST00000470942 DOT1LQ8TEK3 1739 aa21.38■■□□□ 1.01
HDAC6-218ENST00000470942 CNGB1Q14028 1251 aaPredicted RBP21.37■■□□□ 1.01
HDAC6-218ENST00000470942 TXNRD1Q16881 649 aa21.37■■□□□ 1.01
HDAC6-218ENST00000470942 PROM2Q8N271 834 aa21.37■■□□□ 1.01
HDAC6-218ENST00000470942 PCDH11XQ9BZA7 1347 aa21.36■■□□□ 1.01
HDAC6-218ENST00000470942 PCDH11YQ9BZA8 1340 aa21.36■■□□□ 1.01
HDAC6-218ENST00000470942 PRIM1P49642 420 aaKnown RBP21.36■■□□□ 1.01
HDAC6-218ENST00000470942 NCAPD2Q15021 1401 aa21.36■■□□□ 1.01
HDAC6-218ENST00000470942 SPG7Q9UQ90 795 aa21.34■■□□□ 1.01
HDAC6-218ENST00000470942 PKD1L3Q7Z443 1732 aa21.33■■□□□ 1.01
HDAC6-218ENST00000470942 CYP27B1O15528 508 aa21.31■■□□□ 1
HDAC6-218ENST00000470942 IGSF1Q8N6C5 1336 aa21.3■■□□□ 1
HDAC6-218ENST00000470942 MTHFSP49914 203 aa21.3■■□□□ 1
HDAC6-218ENST00000470942 ANO8Q9HCE9 1232 aaPredicted RBP21.3■■□□□ 1
HDAC6-218ENST00000470942 SRCAPQ6ZRS2 3230 aa21.29■■□□□ 1
HDAC6-218ENST00000470942 STK32BQ9NY57 414 aa21.29■■□□□ 1
HDAC6-218ENST00000470942 NPC1L1Q9UHC9 1359 aa21.28■■□□□ 1
HDAC6-218ENST00000470942 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.28■■□□□ 16e-7■□□□□ 10.3
HDAC6-218ENST00000470942 LRP5O75197 1615 aa21.28■■□□□ 1
HDAC6-218ENST00000470942 IL13P35225 146 aa21.26■□□□□ 0.99
HDAC6-218ENST00000470942 MPRIPQ6WCQ1 1025 aa21.26■□□□□ 0.99
HDAC6-218ENST00000470942 ITGB4P16144 1822 aa21.26■□□□□ 0.99
HDAC6-218ENST00000470942 SLC15A2Q16348 729 aa21.25■□□□□ 0.99
HDAC6-218ENST00000470942 IFNL2Q8IZJ0 200 aa21.25■□□□□ 0.99
HDAC6-218ENST00000470942 TOGARAM1Q9Y4F4 1720 aa21.24■□□□□ 0.99
HDAC6-218ENST00000470942 NKX1-1Q15270 411 aaPredicted RBP21.24■□□□□ 0.99
HDAC6-218ENST00000470942 PLEKHO1Q53GL0 409 aaPredicted RBP21.24■□□□□ 0.99
HDAC6-218ENST00000470942 SULT6B1Q6IMI4 303 aa21.24■□□□□ 0.99
HDAC6-218ENST00000470942 AEBP1Q8IUX7 1158 aa21.24■□□□□ 0.99
HDAC6-218ENST00000470942 LRRC4BQ9NT99 713 aa21.24■□□□□ 0.99
HDAC6-218ENST00000470942 LY75O60449 1722 aa21.24■□□□□ 0.99
HDAC6-218ENST00000470942 PHKG2P15735 406 aa21.23■□□□□ 0.99
HDAC6-218ENST00000470942 SLC27A3Q5K4L6 730 aa21.23■□□□□ 0.99
HDAC6-218ENST00000470942 DIAPH1O60610 1272 aaKnown RBP21.21■□□□□ 0.99
HDAC6-218ENST00000470942 KCNQ4P56696 695 aa21.21■□□□□ 0.99
HDAC6-218ENST00000470942 PLEKHG2Q9H7P9 1386 aa21.21■□□□□ 0.99
HDAC6-218ENST00000470942 PAPPAQ13219 1627 aa21.2■□□□□ 0.98
HDAC6-218ENST00000470942 AMOTQ4VCS5 1084 aa21.2■□□□□ 0.98
HDAC6-218ENST00000470942 ZNF530Q6P9A1 599 aaPredicted RBP21.2■□□□□ 0.98
HDAC6-218ENST00000470942 CCNL1Q9UK58 526 aaPredicted RBP21.2■□□□□ 0.98
HDAC6-218ENST00000470942 CASZ1Q86V15 1759 aa21.19■□□□□ 0.98
HDAC6-218ENST00000470942 PDGFDQ9GZP0 370 aaPredicted RBP21.19■□□□□ 0.98
HDAC6-218ENST00000470942 SPON1Q9HCB6 807 aa21.19■□□□□ 0.98
HDAC6-218ENST00000470942 ZNF827Q17R98 1081 aa21.18■□□□□ 0.98
HDAC6-218ENST00000470942 PIGBQ92521 554 aa21.18■□□□□ 0.98
HDAC6-218ENST00000470942 TMOD3Q9NYL9 352 aa21.18■□□□□ 0.98
HDAC6-218ENST00000470942 HSP90AB1P08238 724 aaKnown RBP21.17■□□□□ 0.98
HDAC6-218ENST00000470942 HMOX1P09601 288 aa21.17■□□□□ 0.98
HDAC6-218ENST00000470942 KDRP35968 1356 aa21.17■□□□□ 0.98
HDAC6-218ENST00000470942 PALLDQ8WX93 1383 aa21.16■□□□□ 0.98
HDAC6-218ENST00000470942 ZBTB7AO95365 584 aa21.16■□□□□ 0.98
HDAC6-218ENST00000470942 C1orf141Q5JVX7 400 aa21.16■□□□□ 0.98
HDAC6-218ENST00000470942 SMARCC1Q92922 1105 aaPredicted RBP21.16■□□□□ 0.98
HDAC6-218ENST00000470942 AKT1S1Q96B36 256 aa21.15■□□□□ 0.98
HDAC6-218ENST00000470942 U2SURPO15042 1029 aaKnown RBP21.14■□□□□ 0.97
HDAC6-218ENST00000470942 DCAF5Q96JK2 942 aa21.14■□□□□ 0.97
HDAC6-218ENST00000470942 CFAP53Q96M91 514 aa21.14■□□□□ 0.97
HDAC6-218ENST00000470942 PPP1R1BQ9UD71 204 aaPredicted RBP21.14■□□□□ 0.97
HDAC6-218ENST00000470942 TFCP2L1Q9NZI6 479 aa21.13■□□□□ 0.97
HDAC6-218ENST00000470942 ATF5Q9Y2D1 282 aaPredicted RBP21.13■□□□□ 0.97
HDAC6-218ENST00000470942 COL3A1P02461 1466 aaPredicted RBP21.13■□□□□ 0.97
HDAC6-218ENST00000470942 ERVV-2B6SEH9 535 aa21.12■□□□□ 0.97
HDAC6-218ENST00000470942 PPP2R1AP30153 589 aa21.12■□□□□ 0.97
HDAC6-218ENST00000470942 C5P01031 1676 aa21.12■□□□□ 0.97
HDAC6-218ENST00000470942 TAF1LQ8IZX4 1826 aa21.11■□□□□ 0.97
HDAC6-218ENST00000470942 TUBGCP6Q96RT7 1819 aa21.11■□□□□ 0.97
HDAC6-218ENST00000470942 QSER1Q2KHR3 1735 aa21.11■□□□□ 0.97
HDAC6-218ENST00000470942 HMGB2P26583 209 aaKnown RBP21.1■□□□□ 0.97
HDAC6-218ENST00000470942 CABP4P57796 275 aa21.1■□□□□ 0.97
HDAC6-218ENST00000470942 ASAP1Q9ULH1 1129 aa21.1■□□□□ 0.97
HDAC6-218ENST00000470942 MTFR1LQ9H019 292 aa21.09■□□□□ 0.97
HDAC6-218ENST00000470942 KDM6AO15550 1401 aaPredicted RBP21.09■□□□□ 0.97
HDAC6-218ENST00000470942 AKAP4Q5JQC9 854 aa21.08■□□□□ 0.97
HDAC6-218ENST00000470942 ATG3Q9NT62 314 aa21.08■□□□□ 0.97
HDAC6-218ENST00000470942 PNPLA7Q6ZV29 1317 aa21.07■□□□□ 0.96
HDAC6-218ENST00000470942 VIRMAQ69YN4 1812 aaKnown RBP21.07■□□□□ 0.96
HDAC6-218ENST00000470942 LOC102724428A0A0B4J2F2 783 aa21.07■□□□□ 0.96
HDAC6-218ENST00000470942 SIK1P57059 783 aa21.07■□□□□ 0.96
HDAC6-218ENST00000470942 NUDCQ9Y266 331 aa21.07■□□□□ 0.96
HDAC6-218ENST00000470942 SCN11AQ9UI33 1791 aa21.07■□□□□ 0.96
HDAC6-218ENST00000470942 MSH5O43196 834 aa21.06■□□□□ 0.96
HDAC6-218ENST00000470942 DDX10Q13206 875 aaKnown RBP21.06■□□□□ 0.96
HDAC6-218ENST00000470942 MTHFSDQ2M296 383 aaKnown RBP21.06■□□□□ 0.96
HDAC6-218ENST00000470942 ZEB1P37275 1124 aaPredicted RBP21.05■□□□□ 0.96
HDAC6-218ENST00000470942 ATP6V1AP38606 617 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms