RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 ARHGAP45Q92619 1136 aa21.61■■□□□ 1.05
SMARCD3-206ENST00000470588 RWDD1Q9H446 243 aaPredicted RBP21.61■■□□□ 1.05
SMARCD3-206ENST00000470588 PCDHB15Q9Y5E8 787 aa21.6■■□□□ 1.05
SMARCD3-206ENST00000470588 DCTN1Q14203 1278 aa21.59■■□□□ 1.05
SMARCD3-206ENST00000470588 MRPL50Q8N5N7 158 aaKnown RBP21.59■■□□□ 1.05
SMARCD3-206ENST00000470588 CHL1O00533 1208 aa21.59■■□□□ 1.05
SMARCD3-206ENST00000470588 TWISTNBQ3B726 338 aaPredicted RBP21.59■■□□□ 1.05
SMARCD3-206ENST00000470588 SKAP1Q86WV1 359 aa21.59■■□□□ 1.05
SMARCD3-206ENST00000470588 DDX17Q92841 729 aaKnown RBP21.59■■□□□ 1.05
SMARCD3-206ENST00000470588 HAP1P54257 671 aaPredicted RBP21.58■■□□□ 1.04
SMARCD3-206ENST00000470588 TSPYL6Q8N831 410 aa21.58■■□□□ 1.04
SMARCD3-206ENST00000470588 SPATA31A3Q5VYP0 1347 aa21.57■■□□□ 1.04
SMARCD3-206ENST00000470588 PLEKHG5O94827 1062 aa21.57■■□□□ 1.04
SMARCD3-206ENST00000470588 GAS2L2Q8NHY3 880 aa21.57■■□□□ 1.04
SMARCD3-206ENST00000470588 MED1Q15648 1581 aaPredicted RBP21.57■■□□□ 1.04
SMARCD3-206ENST00000470588 HTATSF1O43719 755 aaKnown RBP21.56■■□□□ 1.04
SMARCD3-206ENST00000470588 ARHGEF25Q86VW2 580 aa21.56■■□□□ 1.04
SMARCD3-206ENST00000470588 C8orf58Q8NAV2 365 aa21.56■■□□□ 1.04
SMARCD3-206ENST00000470588 MSH5O43196 834 aa21.56■■□□□ 1.04
SMARCD3-206ENST00000470588 ANP32AP39687 249 aaKnown RBP21.56■■□□□ 1.04
SMARCD3-206ENST00000470588 MTHFSDQ2M296 383 aaKnown RBP21.56■■□□□ 1.04
SMARCD3-206ENST00000470588 LTV1Q96GA3 475 aaPredicted RBP21.56■■□□□ 1.04
SMARCD3-206ENST00000470588 NHSL1Q5SYE7 1610 aa21.55■■□□□ 1.04
SMARCD3-206ENST00000470588 ITPRIPQ8IWB1 547 aa21.55■■□□□ 1.04
SMARCD3-206ENST00000470588 TMEM57Q8N5G2 664 aa21.55■■□□□ 1.04
SMARCD3-206ENST00000470588 RTF1Q92541 710 aaKnown RBP21.54■■□□□ 1.04
SMARCD3-206ENST00000470588 CHMP4BQ9H444 224 aaKnown RBP21.54■■□□□ 1.04
SMARCD3-206ENST00000470588 MCM10Q7L590 875 aa21.53■■□□□ 1.04
SMARCD3-206ENST00000470588 KIAA0232Q92628 1395 aa21.53■■□□□ 1.04
SMARCD3-206ENST00000470588 CRYBG1Q9Y4K1 1723 aa21.53■■□□□ 1.04
SMARCD3-206ENST00000470588 ELL2O00472 640 aaPredicted RBP21.53■■□□□ 1.04
SMARCD3-206ENST00000470588 SOS2Q07890 1332 aaPredicted RBP21.52■■□□□ 1.04
SMARCD3-206ENST00000470588 CRB1P82279 1406 aa21.52■■□□□ 1.04
SMARCD3-206ENST00000470588 LTBP4Q8N2S1 1624 aa21.52■■□□□ 1.04
SMARCD3-206ENST00000470588 FAM161AQ3B820 660 aa21.52■■□□□ 1.04
SMARCD3-206ENST00000470588 ABCC6O95255 1503 aa21.52■■□□□ 1.04
SMARCD3-206ENST00000470588 RGS3P49796 1198 aa21.51■■□□□ 1.03
SMARCD3-206ENST00000470588 ZBTB40Q9NUA8 1239 aa21.51■■□□□ 1.03
SMARCD3-206ENST00000470588 HDAC1Q13547 482 aaPredicted RBP21.51■■□□□ 1.03
SMARCD3-206ENST00000470588 API5Q9BZZ5 524 aaKnown RBP21.5■■□□□ 1.03
SMARCD3-206ENST00000470588 ZC3H6P61129 1189 aaKnown RBP21.48■■□□□ 1.03
SMARCD3-206ENST00000470588 IPO9Q96P70 1041 aaKnown RBP21.48■■□□□ 1.03
SMARCD3-206ENST00000470588 GNAT3A8MTJ3 354 aa21.47■■□□□ 1.03
SMARCD3-206ENST00000470588 ANKRD24Q8TF21 1146 aa21.47■■□□□ 1.03
SMARCD3-206ENST00000470588 RGPD2P0DJD1 1756 aa21.46■■□□□ 1.03
SMARCD3-206ENST00000470588 RGPD5Q99666 1765 aa21.46■■□□□ 1.03
SMARCD3-206ENST00000470588 PDZRN3Q9UPQ7 1066 aa21.46■■□□□ 1.03
SMARCD3-206ENST00000470588 FAM208AQ9UK61 1670 aaKnown RBP21.46■■□□□ 1.03
SMARCD3-206ENST00000470588 ROBO1Q9Y6N7 1651 aa21.46■■□□□ 1.03
SMARCD3-206ENST00000470588 ABCC4O15439 1325 aa21.46■■□□□ 1.03
SMARCD3-206ENST00000470588 CAMTA1Q9Y6Y1 1673 aa21.45■■□□□ 1.02
SMARCD3-206ENST00000470588 ZBTB7BO15156 539 aaPredicted RBP21.45■■□□□ 1.02
SMARCD3-206ENST00000470588 C8orf34Q49A92 452 aa21.45■■□□□ 1.02
SMARCD3-206ENST00000470588 CPDO75976 1380 aa21.45■■□□□ 1.02
SMARCD3-206ENST00000470588 BABAM1Q9NWV8 329 aa21.44■■□□□ 1.02
SMARCD3-206ENST00000470588 NBPF6Q5VWK0 638 aa21.43■■□□□ 1.02
SMARCD3-206ENST00000470588 CABLES1Q8TDN4 633 aa21.43■■□□□ 1.02
SMARCD3-206ENST00000470588 NBPF4Q96M43 638 aa21.43■■□□□ 1.02
SMARCD3-206ENST00000470588 TSPYL4Q9UJ04 414 aa21.43■■□□□ 1.02
SMARCD3-206ENST00000470588 ABCA3Q99758 1704 aa21.43■■□□□ 1.02
SMARCD3-206ENST00000470588 COL18A1P39060 1754 aa21.43■■□□□ 1.02
SMARCD3-206ENST00000470588 USHBP1Q8N6Y0 703 aa21.43■■□□□ 1.02
SMARCD3-206ENST00000470588 ANP32EQ9BTT0 268 aa21.43■■□□□ 1.02
SMARCD3-206ENST00000470588 ERICH6Q7L0X2 663 aa21.42■■□□□ 1.02
SMARCD3-206ENST00000470588 AHDC1Q5TGY3 1603 aaPredicted RBP21.41■■□□□ 1.02
SMARCD3-206ENST00000470588 NCAPD2Q15021 1401 aa21.41■■□□□ 1.02
SMARCD3-206ENST00000470588 MAP3K5Q99683 1374 aa21.41■■□□□ 1.02
SMARCD3-206ENST00000470588 ERBB3P21860 1342 aa21.41■■□□□ 1.02
SMARCD3-206ENST00000470588 SMC5Q8IY18 1101 aa21.41■■□□□ 1.02
SMARCD3-206ENST00000470588 KRT24Q2M2I5 525 aa21.4■■□□□ 1.02
SMARCD3-206ENST00000470588 LRRC59Q96AG4 307 aaKnown RBP21.4■■□□□ 1.02
SMARCD3-206ENST00000470588 AXIN2Q9Y2T1 843 aa21.4■■□□□ 1.02
SMARCD3-206ENST00000470588 NPM2Q86SE8 214 aaKnown RBP21.39■■□□□ 1.01
SMARCD3-206ENST00000470588 MIS18AQ9NYP9 233 aa21.39■■□□□ 1.01
SMARCD3-206ENST00000470588 PTPRCP08575 1304 aa21.39■■□□□ 1.01
SMARCD3-206ENST00000470588 SOS1Q07889 1333 aaPredicted RBP21.39■■□□□ 1.01
SMARCD3-206ENST00000470588 TAF7Q15545 349 aaPredicted RBP21.38■■□□□ 1.01
SMARCD3-206ENST00000470588 IL17REQ8NFR9 667 aa21.38■■□□□ 1.01
SMARCD3-206ENST00000470588 NOP58Q9Y2X3 529 aaKnown RBP21.38■■□□□ 1.01
SMARCD3-206ENST00000470588 LMO7Q8WWI1 1683 aa21.38■■□□□ 1.01
SMARCD3-206ENST00000470588 CSB-PGBD3P0DP91 1061 aa21.38■■□□□ 1.01
SMARCD3-206ENST00000470588 INTS3Q68E01 1043 aaKnown RBP21.38■■□□□ 1.01
SMARCD3-206ENST00000470588 ZBTB47Q9UFB7 747 aaPredicted RBP21.38■■□□□ 1.01
SMARCD3-206ENST00000470588 PLEKHO1Q53GL0 409 aaPredicted RBP21.37■■□□□ 1.01
SMARCD3-206ENST00000470588 PRDM11Q9NQV5 511 aa21.37■■□□□ 1.01
SMARCD3-206ENST00000470588 AMOTQ4VCS5 1084 aa21.36■■□□□ 1.01
SMARCD3-206ENST00000470588 CHRNA2Q15822 529 aa21.36■■□□□ 1.01
SMARCD3-206ENST00000470588 AEBP2Q6ZN18 517 aaPredicted RBP21.36■■□□□ 1.01
SMARCD3-206ENST00000470588 LRRC37A3O60309 1634 aa21.35■■□□□ 1.01
SMARCD3-206ENST00000470588 NLRP2Q9NX02 1062 aa21.35■■□□□ 1.01
SMARCD3-206ENST00000470588 TOM1O60784 492 aa21.34■■□□□ 1.01
SMARCD3-206ENST00000470588 SLC4A2P04920 1241 aa21.34■■□□□ 1.01
SMARCD3-206ENST00000470588 DDRGK1Q96HY6 314 aa21.34■■□□□ 1.01
SMARCD3-206ENST00000470588 PHLPP1O60346 1717 aa21.33■■□□□ 1
SMARCD3-206ENST00000470588 RAPGEF4Q8WZA2 1011 aa21.32■■□□□ 1
SMARCD3-206ENST00000470588 GCC1Q96CN9 775 aa21.32■■□□□ 1
SMARCD3-206ENST00000470588 PLEKHG2Q9H7P9 1386 aa21.31■■□□□ 1
SMARCD3-206ENST00000470588 NUCB1Q02818 461 aa21.31■■□□□ 1
SMARCD3-206ENST00000470588 AKAP4Q5JQC9 854 aa21.31■■□□□ 1
SMARCD3-206ENST00000470588 CCDC30Q5VVM6 783 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms