RNA–Protein interactions for RNA: ENST00000470026.5

BRCA1-209, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-209ENST00000470026 ACEP12821 1306 aa16.99■□□□□ 0.31
BRCA1-209ENST00000470026 XRCC6P12956 609 aaKnown RBP eCLIP16.99■□□□□ 0.31
BRCA1-209ENST00000470026 KIF13AQ9H1H9 1805 aa16.98■□□□□ 0.31
BRCA1-209ENST00000470026 K7ELQ4 463 aaPredicted RBP16.98■□□□□ 0.31
BRCA1-209ENST00000470026 CD2BP2O95400 341 aaKnown RBP16.98■□□□□ 0.31
BRCA1-209ENST00000470026 TTC22Q5TAA0 569 aa16.98■□□□□ 0.31
BRCA1-209ENST00000470026 ARHGEF10O15013 1369 aa16.97■□□□□ 0.31
BRCA1-209ENST00000470026 TNPO1Q92973 898 aaKnown RBP16.97■□□□□ 0.31
BRCA1-209ENST00000470026 ISY1Q9ULR0 285 aaKnown RBP16.97■□□□□ 0.31
BRCA1-209ENST00000470026 RTL1A6NKG5 1358 aa16.97■□□□□ 0.31
BRCA1-209ENST00000470026 HSP90AB1P08238 724 aaKnown RBP16.97■□□□□ 0.31
BRCA1-209ENST00000470026 CEP85Q6P2H3 762 aa16.97■□□□□ 0.31
BRCA1-209ENST00000470026 FMN2Q9NZ56 1722 aa16.96■□□□□ 0.31
BRCA1-209ENST00000470026 ESF1Q9H501 851 aaKnown RBP16.96■□□□□ 0.31
BRCA1-209ENST00000470026 KRT24Q2M2I5 525 aa16.96■□□□□ 0.3
BRCA1-209ENST00000470026 CLEC17AQ6ZS10 378 aa16.96■□□□□ 0.3
BRCA1-209ENST00000470026 MSH6P52701 1360 aa16.95■□□□□ 0.3
BRCA1-209ENST00000470026 HSP90AB2PQ58FF8 381 aa16.94■□□□□ 0.3
BRCA1-209ENST00000470026 MCM10Q7L590 875 aa16.94■□□□□ 0.3
BRCA1-209ENST00000470026 PTPRUQ92729 1446 aa16.94■□□□□ 0.3
BRCA1-209ENST00000470026 KDRP35968 1356 aa16.94■□□□□ 0.3
BRCA1-209ENST00000470026 PTMSP20962 102 aa16.94■□□□□ 0.3
BRCA1-209ENST00000470026 GBP4Q96PP9 640 aa16.94■□□□□ 0.3
BRCA1-209ENST00000470026 TTC21AQ8NDW8 1320 aa16.93■□□□□ 0.3
BRCA1-209ENST00000470026 MRE11P49959 708 aa16.93■□□□□ 0.3
BRCA1-209ENST00000470026 ANO8Q9HCE9 1232 aaPredicted RBP16.93■□□□□ 0.3
BRCA1-209ENST00000470026 RBM42Q9BTD8 480 aaKnown RBP16.93■□□□□ 0.3
BRCA1-209ENST00000470026 RABEP1Q15276 862 aa16.92■□□□□ 0.3
BRCA1-209ENST00000470026 USP26Q9BXU7 913 aa16.92■□□□□ 0.3
BRCA1-209ENST00000470026 LRRC37A3O60309 1634 aa16.91■□□□□ 0.3
BRCA1-209ENST00000470026 LTKP29376 864 aa16.91■□□□□ 0.3
BRCA1-209ENST00000470026 C16orf71Q8IYS4 520 aaPredicted RBP16.91■□□□□ 0.3
BRCA1-209ENST00000470026 GZF1Q9H116 711 aaPredicted RBP16.91■□□□□ 0.3
BRCA1-209ENST00000470026 SBNO1A3KN83 1393 aa16.91■□□□□ 0.3
BRCA1-209ENST00000470026 SKOR2Q2VWA4 1001 aaPredicted RBP16.91■□□□□ 0.3
BRCA1-209ENST00000470026 GAS2L2Q8NHY3 880 aa16.91■□□□□ 0.3
BRCA1-209ENST00000470026 MAP3K19Q56UN5 1328 aa16.91■□□□□ 0.3
BRCA1-209ENST00000470026 RIMS1Q86UR5 1692 aaKnown RBP16.9■□□□□ 0.3
BRCA1-209ENST00000470026 MEIS3Q99687 375 aa16.9■□□□□ 0.3
BRCA1-209ENST00000470026 FLT4P35916 1363 aa16.9■□□□□ 0.3
BRCA1-209ENST00000470026 SLIT1O75093 1534 aa16.9■□□□□ 0.3
BRCA1-209ENST00000470026 ARHGAP23Q9P227 1491 aa16.89■□□□□ 0.29
BRCA1-209ENST00000470026 OTUD7AQ8TE49 926 aaPredicted RBP16.89■□□□□ 0.29
BRCA1-209ENST00000470026 OSBPL3Q9H4L5 887 aa16.89■□□□□ 0.29
BRCA1-209ENST00000470026 RRAGDQ9NQL2 400 aaPredicted RBP16.89■□□□□ 0.29
BRCA1-209ENST00000470026 MTHFSDQ2M296 383 aaKnown RBP16.88■□□□□ 0.29
BRCA1-209ENST00000470026 PANK2Q9BZ23 570 aa16.88■□□□□ 0.29
BRCA1-209ENST00000470026 IGSF1Q8N6C5 1336 aa16.88■□□□□ 0.29
BRCA1-209ENST00000470026 SLC4A2P04920 1241 aa16.88■□□□□ 0.29
BRCA1-209ENST00000470026 SDSP20132 328 aa16.88■□□□□ 0.29
BRCA1-209ENST00000470026 USP54Q70EL1 1684 aa16.88■□□□□ 0.29
BRCA1-209ENST00000470026 GRPEL1Q9HAV7 217 aa16.87■□□□□ 0.29
BRCA1-209ENST00000470026 CEP170BQ9Y4F5 1589 aaPredicted RBP16.87■□□□□ 0.29
BRCA1-209ENST00000470026 PIK3C2AO00443 1686 aa16.87■□□□□ 0.29
BRCA1-209ENST00000470026 HTATSF1O43719 755 aaKnown RBP16.87■□□□□ 0.29
BRCA1-209ENST00000470026 CCT4P50991 539 aaKnown RBP16.87■□□□□ 0.29
BRCA1-209ENST00000470026 DIP2AQ14689 1571 aa16.86■□□□□ 0.29
BRCA1-209ENST00000470026 TUBGCP6Q96RT7 1819 aa16.86■□□□□ 0.29
BRCA1-209ENST00000470026 N4BP2Q86UW6 1770 aaPredicted RBP16.86■□□□□ 0.29
BRCA1-209ENST00000470026 HMMRO75330 724 aa16.86■□□□□ 0.29
BRCA1-209ENST00000470026 HSP90AA1P07900 732 aaKnown RBP16.86■□□□□ 0.29
BRCA1-209ENST00000470026 CYP2E1P05181 493 aaPredicted RBP16.85■□□□□ 0.29
BRCA1-209ENST00000470026 FAM208AQ9UK61 1670 aaKnown RBP16.85■□□□□ 0.29
BRCA1-209ENST00000470026 FOXO3O43524 673 aa16.85■□□□□ 0.29
BRCA1-209ENST00000470026 SSFA2P28290 1259 aa16.85■□□□□ 0.29
BRCA1-209ENST00000470026 G2E3Q7L622 706 aa16.85■□□□□ 0.29
BRCA1-209ENST00000470026 TBX22Q9Y458 520 aa16.85■□□□□ 0.29
BRCA1-209ENST00000470026 XRN1Q8IZH2 1706 aaKnown RBP16.84■□□□□ 0.29
BRCA1-209ENST00000470026 SMARCA5O60264 1052 aaPredicted RBP16.84■□□□□ 0.29
BRCA1-209ENST00000470026 EYA1Q99502 592 aa16.84■□□□□ 0.29
BRCA1-209ENST00000470026 TSPYL4Q9UJ04 414 aa16.84■□□□□ 0.29
BRCA1-209ENST00000470026 IBTKQ9P2D0 1353 aaPredicted RBP16.84■□□□□ 0.29
BRCA1-209ENST00000470026 MARF1Q9Y4F3 1742 aaKnown RBP16.84■□□□□ 0.29
BRCA1-209ENST00000470026 CACNA1FO60840 1977 aa16.84■□□□□ 0.29
BRCA1-209ENST00000470026 CASC1Q6TDU7 716 aa16.84■□□□□ 0.29
BRCA1-209ENST00000470026 RTF1Q92541 710 aaKnown RBP16.84■□□□□ 0.29
BRCA1-209ENST00000470026 SOS1Q07889 1333 aaPredicted RBP16.84■□□□□ 0.29
BRCA1-209ENST00000470026 SALL3Q9BXA9 1300 aa16.84■□□□□ 0.29
BRCA1-209ENST00000470026 NWD1Q149M9 1564 aa16.83■□□□□ 0.29
BRCA1-209ENST00000470026 RGPD8O14715 1765 aaPredicted RBP16.83■□□□□ 0.29
BRCA1-209ENST00000470026 FOXD4L1Q9NU39 408 aa16.83■□□□□ 0.28
BRCA1-209ENST00000470026 NUTM2FA1L443 756 aa16.82■□□□□ 0.28
BRCA1-209ENST00000470026 BAG4O95429 457 aaKnown RBP16.82■□□□□ 0.28
BRCA1-209ENST00000470026 GAS2L3Q86XJ1 694 aa16.82■□□□□ 0.28
BRCA1-209ENST00000470026 MIS18AQ9NYP9 233 aa16.82■□□□□ 0.28
BRCA1-209ENST00000470026 AMOTL2Q9Y2J4 779 aa16.82■□□□□ 0.28
BRCA1-209ENST00000470026 REC8O95072 547 aa16.82■□□□□ 0.28
BRCA1-209ENST00000470026 NUCB2P80303 420 aa16.82■□□□□ 0.28
BRCA1-209ENST00000470026 ANKARQ7Z5J8 1434 aa16.81■□□□□ 0.28
BRCA1-209ENST00000470026 PDE1AP54750 535 aa16.81■□□□□ 0.28
BRCA1-209ENST00000470026 CWC22Q9HCG8 908 aaKnown RBP16.81■□□□□ 0.28
BRCA1-209ENST00000470026 KLHL40Q2TBA0 621 aa16.81■□□□□ 0.28
BRCA1-209ENST00000470026 SLC26A8Q96RN1 970 aa16.81■□□□□ 0.28
BRCA1-209ENST00000470026 BABAM1Q9NWV8 329 aa16.81■□□□□ 0.28
BRCA1-209ENST00000470026 F6X3S4 739 aa16.8■□□□□ 0.28
BRCA1-209ENST00000470026 GOLGA6L22H0YM25 854 aa16.8■□□□□ 0.28
BRCA1-209ENST00000470026 ERC2O15083 957 aa16.8■□□□□ 0.28
BRCA1-209ENST00000470026 GNAI2P04899 355 aa16.8■□□□□ 0.28
BRCA1-209ENST00000470026 EID1Q9Y6B2 187 aa16.8■□□□□ 0.28
BRCA1-209ENST00000470026 PXDNLA1KZ92 1463 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms