RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 ZCRB1Q8TBF4 217 aaKnown RBP34.09■■■■□ 3.05
PTCH1-210ENST00000468211 ATF5Q9Y2D1 282 aaPredicted RBP34.08■■■■□ 3.05
PTCH1-210ENST00000468211 PTGER2P43116 358 aa34.07■■■■□ 3.04
PTCH1-210ENST00000468211 INSRP06213 1382 aa34.07■■■■□ 3.04
PTCH1-210ENST00000468211 PRIM1P49642 420 aaKnown RBP34.05■■■■□ 3.04
PTCH1-210ENST00000468211 ZNF827Q17R98 1081 aa34.05■■■■□ 3.04
PTCH1-210ENST00000468211 NSD2O96028 1365 aa34.04■■■■□ 3.04
PTCH1-210ENST00000468211 FLT4P35916 1363 aa34.04■■■■□ 3.04
PTCH1-210ENST00000468211 SMG6Q86US8 1419 aaKnown RBP34.04■■■■□ 3.04
PTCH1-210ENST00000468211 SYTL4Q96C24 671 aaPredicted RBP34.03■■■■□ 3.04
PTCH1-210ENST00000468211 EMILIN1Q9Y6C2 1016 aa34.03■■■■□ 3.04
PTCH1-210ENST00000468211 LY75O60449 1722 aa34.03■■■■□ 3.04
PTCH1-210ENST00000468211 MAP2P11137 1827 aaKnown RBP34.02■■■■□ 3.04
PTCH1-210ENST00000468211 ANKRD26Q9UPS8 1709 aa34.01■■■■□ 3.03
PTCH1-210ENST00000468211 KIF24Q5T7B8 1368 aa34■■■■□ 3.03
PTCH1-210ENST00000468211 KCNQ4P56696 695 aa33.99■■■■□ 3.03
PTCH1-210ENST00000468211 TUBGCP6Q96RT7 1819 aa33.99■■■■□ 3.03
PTCH1-210ENST00000468211 RAPGEF4Q8WZA2 1011 aa33.98■■■■□ 3.03
PTCH1-210ENST00000468211 SGIP1Q9BQI5 828 aa33.97■■■■□ 3.03
PTCH1-210ENST00000468211 MTFR1LQ9H019 292 aa33.97■■■■□ 3.03
PTCH1-210ENST00000468211 CGNL1Q0VF96 1302 aa33.97■■■■□ 3.03
PTCH1-210ENST00000468211 QSER1Q2KHR3 1735 aa33.96■■■■□ 3.03
PTCH1-210ENST00000468211 SLC27A3Q5K4L6 730 aa33.96■■■■□ 3.03
PTCH1-210ENST00000468211 AKT1S1Q96B36 256 aa33.96■■■■□ 3.03
PTCH1-210ENST00000468211 POLR3GLQ9BT43 218 aa33.96■■■■□ 3.03
PTCH1-210ENST00000468211 TATP17735 454 aaPredicted RBP33.95■■■■□ 3.03
PTCH1-210ENST00000468211 PPM1GO15355 546 aaPredicted RBP33.92■■■■□ 3.02
PTCH1-210ENST00000468211 PKD1L3Q7Z443 1732 aa33.91■■■■□ 3.02
PTCH1-210ENST00000468211 HSPA5P11021 654 aaKnown RBP33.91■■■■□ 3.02
PTCH1-210ENST00000468211 CCER1Q8TC90 406 aaPredicted RBP33.89■■■■□ 3.02
PTCH1-210ENST00000468211 TOGARAM1Q9Y4F4 1720 aa33.89■■■■□ 3.02
PTCH1-210ENST00000468211 NCAPD2Q15021 1401 aa33.88■■■■□ 3.01
PTCH1-210ENST00000468211 EIF4G2P78344 907 aaKnown RBP eCLIP33.88■■■■□ 3.01
PTCH1-210ENST00000468211 FHDC1Q9C0D6 1143 aaPredicted RBP33.88■■■■□ 3.01
PTCH1-210ENST00000468211 ITGB4P16144 1822 aa33.88■■■■□ 3.01
PTCH1-210ENST00000468211 PCDH11XQ9BZA7 1347 aa33.87■■■■□ 3.01
PTCH1-210ENST00000468211 PCDH11YQ9BZA8 1340 aa33.87■■■■□ 3.01
PTCH1-210ENST00000468211 CYP27B1O15528 508 aa33.87■■■■□ 3.01
PTCH1-210ENST00000468211 WASHC2AQ641Q2 1341 aa33.86■■■■□ 3.01
PTCH1-210ENST00000468211 PNPLA7Q6ZV29 1317 aa33.86■■■■□ 3.01
PTCH1-210ENST00000468211 POLKQ9UBT6 870 aa33.86■■■■□ 3.01
PTCH1-210ENST00000468211 COL24A1Q17RW2 1714 aa33.85■■■■□ 3.01
PTCH1-210ENST00000468211 SYT17Q9BSW7 474 aa33.85■■■■□ 3.01
PTCH1-210ENST00000468211 CCNL1Q9UK58 526 aaPredicted RBP33.84■■■■□ 3.01
PTCH1-210ENST00000468211 YY1P25490 414 aa33.82■■■■□ 3
PTCH1-210ENST00000468211 ARXQ96QS3 562 aa33.82■■■■□ 3
PTCH1-210ENST00000468211 EYA1Q99502 592 aa33.82■■■■□ 3
PTCH1-210ENST00000468211 TNNT2P45379 298 aaPredicted RBP33.81■■■■□ 3
PTCH1-210ENST00000468211 TFCP2L1Q9NZI6 479 aa33.81■■■■□ 3
PTCH1-210ENST00000468211 DCAF8L1A6NGE4 600 aa33.8■■■■□ 3
PTCH1-210ENST00000468211 C5P01031 1676 aa33.8■■■■□ 3
PTCH1-210ENST00000468211 TAF1LQ8IZX4 1826 aa33.79■■■■□ 3
PTCH1-210ENST00000468211 PANK3Q9H999 370 aa33.79■■■■□ 3
PTCH1-210ENST00000468211 MPRIPQ6WCQ1 1025 aa33.77■■■■□ 3
PTCH1-210ENST00000468211 SLC16A10Q8TF71 515 aa33.77■■■■□ 3
PTCH1-210ENST00000468211 EIF4A2Q14240 407 aaKnown RBP33.74■■■□□ 2.99
PTCH1-210ENST00000468211 PALLDQ8WX93 1383 aa33.73■■■□□ 2.99
PTCH1-210ENST00000468211 NKX1-1Q15270 411 aaPredicted RBP33.72■■■□□ 2.99
PTCH1-210ENST00000468211 UTRNP46939 3433 aa33.72■■■□□ 2.99
PTCH1-210ENST00000468211 MAP3K5Q99683 1374 aa33.72■■■□□ 2.99
PTCH1-210ENST00000468211 SPG7Q9UQ90 795 aa33.71■■■□□ 2.99
PTCH1-210ENST00000468211 COL23A1Q86Y22 540 aaPredicted RBP33.7■■■□□ 2.99
PTCH1-210ENST00000468211 PIGBQ92521 554 aa33.69■■■□□ 2.98
PTCH1-210ENST00000468211 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP33.67■■■□□ 2.98
PTCH1-210ENST00000468211 C4BP0C0L5 1744 aa33.65■■■□□ 2.98
PTCH1-210ENST00000468211 POLD1P28340 1107 aa33.65■■■□□ 2.98
PTCH1-210ENST00000468211 MSH5O43196 834 aa33.64■■■□□ 2.98
PTCH1-210ENST00000468211 CHD4Q14839 1912 aa33.63■■■□□ 2.97
PTCH1-210ENST00000468211 PHKG2P15735 406 aa33.63■■■□□ 2.97
PTCH1-210ENST00000468211 KLHL34Q8N239 644 aa33.63■■■□□ 2.97
PTCH1-210ENST00000468211 IGSF1Q8N6C5 1336 aa33.62■■■□□ 2.97
PTCH1-210ENST00000468211 SMARCC1Q92922 1105 aaPredicted RBP33.62■■■□□ 2.97
PTCH1-210ENST00000468211 UBR3Q6ZT12 1888 aa33.61■■■□□ 2.97
PTCH1-210ENST00000468211 IFNL2Q8IZJ0 200 aa33.6■■■□□ 2.97
PTCH1-210ENST00000468211 MSL1Q68DK7 614 aa33.59■■■□□ 2.97
PTCH1-210ENST00000468211 MORC1Q86VD1 984 aa33.59■■■□□ 2.97
PTCH1-210ENST00000468211 AMIGO3Q86WK7 504 aa33.59■■■□□ 2.97
PTCH1-210ENST00000468211 SMIM5Q71RC9 77 aa33.57■■■□□ 2.96
PTCH1-210ENST00000468211 TMOD3Q9NYL9 352 aa33.57■■■□□ 2.96
PTCH1-210ENST00000468211 ASAP1Q9ULH1 1129 aa33.57■■■□□ 2.96
PTCH1-210ENST00000468211 NLGN2Q8NFZ4 835 aa33.56■■■□□ 2.96
PTCH1-210ENST00000468211 KNSTRNQ9Y448 316 aa33.54■■■□□ 2.96
PTCH1-210ENST00000468211 PLEKHG2Q9H7P9 1386 aa33.53■■■□□ 2.96
PTCH1-210ENST00000468211 LOC102724428A0A0B4J2F2 783 aa33.53■■■□□ 2.96
PTCH1-210ENST00000468211 SIK1P57059 783 aa33.53■■■□□ 2.96
PTCH1-210ENST00000468211 KIF7Q2M1P5 1343 aa33.53■■■□□ 2.96
PTCH1-210ENST00000468211 LINC00116Q8NCU8 138 aa33.52■■■□□ 2.96
PTCH1-210ENST00000468211 AEBP1Q8IUX7 1158 aa33.51■■■□□ 2.95
PTCH1-210ENST00000468211 FLAD1Q8NFF5 587 aa33.51■■■□□ 2.95
PTCH1-210ENST00000468211 AK7Q96M32 723 aa33.51■■■□□ 2.95
PTCH1-210ENST00000468211 GOLGB1Q14789 3259 aaKnown RBP33.51■■■□□ 2.95
PTCH1-210ENST00000468211 ITPK1Q13572 414 aa33.5■■■□□ 2.95
PTCH1-210ENST00000468211 GPR162Q16538 588 aa33.5■■■□□ 2.95
PTCH1-210ENST00000468211 AMER1Q5JTC6 1135 aaPredicted RBP33.5■■■□□ 2.95
PTCH1-210ENST00000468211 ATG3Q9NT62 314 aa33.5■■■□□ 2.95
PTCH1-210ENST00000468211 PHF14O94880 888 aa33.48■■■□□ 2.95
PTCH1-210ENST00000468211 HMGB2P26583 209 aaKnown RBP33.48■■■□□ 2.95
PTCH1-210ENST00000468211 KDM6AO15550 1401 aaPredicted RBP33.46■■■□□ 2.95
PTCH1-210ENST00000468211 PLEKHO1Q53GL0 409 aaPredicted RBP33.46■■■□□ 2.95
PTCH1-210ENST00000468211 PELP1Q8IZL8 1130 aaKnown RBP33.46■■■□□ 2.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms