RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 IDI1Q13907 227 aa10.34□□□□□ -0.75
HPS4-209ENST00000466781 SULT6B1Q6IMI4 303 aa10.34□□□□□ -0.75
HPS4-209ENST00000466781 ZSCAN29Q8IWY8 852 aaPredicted RBP10.34□□□□□ -0.75
HPS4-209ENST00000466781 TSHZ2Q9NRE2 1034 aa10.34□□□□□ -0.75
HPS4-209ENST00000466781 ABCA5Q8WWZ7 1642 aa10.34□□□□□ -0.75
HPS4-209ENST00000466781 CFAP74Q9C0B2 1584 aa10.34□□□□□ -0.75
HPS4-209ENST00000466781 TRIM21P19474 475 aaKnown RBP10.34□□□□□ -0.75
HPS4-209ENST00000466781 ZSCAN25Q6NSZ9 544 aa10.34□□□□□ -0.75
HPS4-209ENST00000466781 ZNHIT6Q9NWK9 470 aaKnown RBP10.34□□□□□ -0.75
HPS4-209ENST00000466781 UHRF1BP1LA0JNW5 1464 aa10.33□□□□□ -0.76
HPS4-209ENST00000466781 NOS1P29475 1434 aa10.33□□□□□ -0.76
HPS4-209ENST00000466781 CEP170Q5SW79 1584 aa10.33□□□□□ -0.76
HPS4-209ENST00000466781 MPHOSPH8Q99549 860 aa10.33□□□□□ -0.76
HPS4-209ENST00000466781 TANGO6Q9C0B7 1094 aa10.33□□□□□ -0.76
HPS4-209ENST00000466781 CCDC39Q9UFE4 941 aa10.33□□□□□ -0.76
HPS4-209ENST00000466781 CCDC61Q9Y6R9 512 aa10.33□□□□□ -0.76
HPS4-209ENST00000466781 NUP153P49790 1475 aaKnown RBP10.33□□□□□ -0.76
HPS4-209ENST00000466781 ANKRD62A6NC57 917 aa10.33□□□□□ -0.76
HPS4-209ENST00000466781 STK38Q15208 465 aa10.33□□□□□ -0.76
HPS4-209ENST00000466781 TRIM22Q8IYM9 498 aa10.33□□□□□ -0.76
HPS4-209ENST00000466781 CADPS2Q86UW7 1296 aa10.33□□□□□ -0.76
HPS4-209ENST00000466781 LUC7LQ9NQ29 371 aaKnown RBP10.33□□□□□ -0.76
HPS4-209ENST00000466781 DACH1Q9UI36 760 aa10.33□□□□□ -0.76
HPS4-209ENST00000466781 ABCC10Q5T3U5 1492 aa10.32□□□□□ -0.76
HPS4-209ENST00000466781 TXLNBQ8N3L3 684 aa10.32□□□□□ -0.76
HPS4-209ENST00000466781 BCL11BQ9C0K0 894 aaPredicted RBP10.32□□□□□ -0.76
HPS4-209ENST00000466781 C1orf115Q9H7X2 142 aa10.32□□□□□ -0.76
HPS4-209ENST00000466781 NCOA1Q15788 1441 aa10.32□□□□□ -0.76
HPS4-209ENST00000466781 NCKAP5LQ9HCH0 1330 aa10.32□□□□□ -0.76
HPS4-209ENST00000466781 IBSPP21815 317 aaPredicted RBP10.32□□□□□ -0.76
HPS4-209ENST00000466781 CCDC57Q2TAC2 916 aa10.32□□□□□ -0.76
HPS4-209ENST00000466781 DEF6Q9H4E7 631 aa10.32□□□□□ -0.76
HPS4-209ENST00000466781 NAIPQ13075 1403 aa10.32□□□□□ -0.76
HPS4-209ENST00000466781 GNAI2P04899 355 aa10.32□□□□□ -0.76
HPS4-209ENST00000466781 ZNF76P36508 570 aa10.32□□□□□ -0.76
HPS4-209ENST00000466781 JMYQ8N9B5 988 aa10.32□□□□□ -0.76
HPS4-209ENST00000466781 NOL7Q9UMY1 257 aaKnown RBP10.32□□□□□ -0.76
HPS4-209ENST00000466781 MYL6BP14649 208 aa10.31□□□□□ -0.76
HPS4-209ENST00000466781 TSR2Q969E8 191 aaKnown RBP10.31□□□□□ -0.76
HPS4-209ENST00000466781 PDCP20941 246 aa10.31□□□□□ -0.76
HPS4-209ENST00000466781 NUP133Q8WUM0 1156 aa10.31□□□□□ -0.76
HPS4-209ENST00000466781 CCDC97Q96F63 343 aaPredicted RBP10.31□□□□□ -0.76
HPS4-209ENST00000466781 DNAI2Q9GZS0 605 aa10.31□□□□□ -0.76
HPS4-209ENST00000466781 TMOD2Q9NZR1 351 aa10.31□□□□□ -0.76
HPS4-209ENST00000466781 BTBD11A6QL63 1104 aa10.31□□□□□ -0.76
HPS4-209ENST00000466781 H0YHG0 523 aa10.31□□□□□ -0.76
HPS4-209ENST00000466781 WASLO00401 505 aaPredicted RBP10.31□□□□□ -0.76
HPS4-209ENST00000466781 TRIM5Q9C035 493 aa10.31□□□□□ -0.76
HPS4-209ENST00000466781 NUP160Q12769 1436 aa10.31□□□□□ -0.76
HPS4-209ENST00000466781 CDCA7LQ96GN5 454 aa10.31□□□□□ -0.76
HPS4-209ENST00000466781 FAM13BQ9NYF5 915 aa10.31□□□□□ -0.76
HPS4-209ENST00000466781 TMOD3Q9NYL9 352 aa10.31□□□□□ -0.76
HPS4-209ENST00000466781 WDHD1O75717 1129 aaPredicted RBP10.3□□□□□ -0.76
HPS4-209ENST00000466781 UHRF1BP1Q6BDS2 1440 aa10.3□□□□□ -0.76
HPS4-209ENST00000466781 NSD3Q9BZ95 1437 aa10.3□□□□□ -0.76
HPS4-209ENST00000466781 SEPT11Q9NVA2 429 aaKnown RBP10.3□□□□□ -0.76
HPS4-209ENST00000466781 RIMS2Q9UQ26 1411 aa10.3□□□□□ -0.76
HPS4-209ENST00000466781 TCP11L2Q8N4U5 519 aa10.3□□□□□ -0.76
HPS4-209ENST00000466781 LMTK3Q96Q04 1460 aa10.3□□□□□ -0.76
HPS4-209ENST00000466781 BRD4O60885 1362 aaPredicted RBP10.3□□□□□ -0.76
HPS4-209ENST00000466781 FOXO3O43524 673 aa10.3□□□□□ -0.76
HPS4-209ENST00000466781 CWC15Q9P013 229 aaKnown RBP10.3□□□□□ -0.76
HPS4-209ENST00000466781 GOLGA6L10A6NI86 522 aa10.29□□□□□ -0.76
HPS4-209ENST00000466781 MCM2P49736 904 aa10.29□□□□□ -0.76
HPS4-209ENST00000466781 CEBPZQ03701 1054 aaKnown RBP10.29□□□□□ -0.76
HPS4-209ENST00000466781 CCDC181Q5TID7 509 aa10.29□□□□□ -0.76
HPS4-209ENST00000466781 VSIG10Q8N0Z9 540 aa10.29□□□□□ -0.76
HPS4-209ENST00000466781 SIL1Q9H173 461 aa10.29□□□□□ -0.76
HPS4-209ENST00000466781 PPM1FP49593 454 aaPredicted RBP10.29□□□□□ -0.76
HPS4-209ENST00000466781 ANKRD1Q15327 319 aa10.29□□□□□ -0.76
HPS4-209ENST00000466781 ENOX2Q16206 610 aaKnown RBP10.29□□□□□ -0.76
HPS4-209ENST00000466781 HDGFL1Q5TGJ6 251 aa10.29□□□□□ -0.76
HPS4-209ENST00000466781 FMNL2Q96PY5 1086 aa10.29□□□□□ -0.76
HPS4-209ENST00000466781 TSPY26PQ9H489 355 aa10.29□□□□□ -0.76
HPS4-209ENST00000466781 SERPINC1P01008 464 aa10.29□□□□□ -0.76
HPS4-209ENST00000466781 TWISTNBQ3B726 338 aaPredicted RBP10.29□□□□□ -0.76
HPS4-209ENST00000466781 PPFIBP1Q86W92 1011 aa10.29□□□□□ -0.76
HPS4-209ENST00000466781 BMP2KQ9NSY1 1161 aaPredicted RBP10.29□□□□□ -0.76
HPS4-209ENST00000466781 EXOSC9Q06265 439 aaKnown RBP10.28□□□□□ -0.76
HPS4-209ENST00000466781 ADGRF5Q8IZF2 1346 aa10.28□□□□□ -0.76
HPS4-209ENST00000466781 TDO2P48775 406 aa10.28□□□□□ -0.76
HPS4-209ENST00000466781 BICDL1Q6ZP65 573 aa10.28□□□□□ -0.76
HPS4-209ENST00000466781 RAI14Q9P0K7 980 aa10.28□□□□□ -0.76
HPS4-209ENST00000466781 STARD3NLO95772 234 aa10.28□□□□□ -0.76
HPS4-209ENST00000466781 AEBP1Q8IUX7 1158 aa10.28□□□□□ -0.76
HPS4-209ENST00000466781 USHBP1Q8N6Y0 703 aa10.28□□□□□ -0.76
HPS4-209ENST00000466781 IGHMBP2P38935 993 aaKnown RBP10.28□□□□□ -0.76
HPS4-209ENST00000466781 STK3Q13188 491 aa10.28□□□□□ -0.76
HPS4-209ENST00000466781 NOB1Q9ULX3 412 aaKnown RBP10.28□□□□□ -0.76
HPS4-209ENST00000466781 ATP10AO60312 1499 aa10.28□□□□□ -0.76
HPS4-209ENST00000466781 ZPR1O75312 459 aa10.27□□□□□ -0.76
HPS4-209ENST00000466781 GBP2P32456 591 aaPredicted RBP10.27□□□□□ -0.76
HPS4-209ENST00000466781 CCT4P50991 539 aaKnown RBP10.27□□□□□ -0.76
HPS4-209ENST00000466781 AXDND1Q5T1B0 1012 aaPredicted RBP10.27□□□□□ -0.76
HPS4-209ENST00000466781 CYP46A1Q9Y6A2 500 aa10.27□□□□□ -0.76
HPS4-209ENST00000466781 CDKL5O76039 1030 aa10.27□□□□□ -0.76
HPS4-209ENST00000466781 TNIP1Q15025 636 aa10.27□□□□□ -0.76
HPS4-209ENST00000466781 EXOC5O00471 708 aa10.27□□□□□ -0.77
HPS4-209ENST00000466781 SSBP05455 408 aaKnown RBP eCLIP10.27□□□□□ -0.77
HPS4-209ENST00000466781 HSPA2P54652 639 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms