RNA–Protein interactions for RNA: ENST00000466379.1

UBE4B-206, Transcript of ubiquitination factor E4B, humanhuman

TSL 2

Gene UBE4B, Length 2,299 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-206ENST00000466379 CHL1O00533 1208 aa17.3■□□□□ 0.36
UBE4B-206ENST00000466379 DDX17Q92841 729 aaKnown RBP17.3■□□□□ 0.36
UBE4B-206ENST00000466379 RTF1Q92541 710 aaKnown RBP17.29■□□□□ 0.36
UBE4B-206ENST00000466379 ATF3P18847 181 aa17.28■□□□□ 0.36
UBE4B-206ENST00000466379 AAMPQ13685 434 aa17.28■□□□□ 0.36
UBE4B-206ENST00000466379 KCNH5Q8NCM2 988 aa17.28■□□□□ 0.36
UBE4B-206ENST00000466379 GAS2L2Q8NHY3 880 aa17.28■□□□□ 0.36
UBE4B-206ENST00000466379 DDX19BQ9UMR2 479 aa17.28■□□□□ 0.36
UBE4B-206ENST00000466379 BRPF1P55201 1214 aaPredicted RBP17.28■□□□□ 0.36
UBE4B-206ENST00000466379 KIF1AQ12756 1690 aa17.28■□□□□ 0.36
UBE4B-206ENST00000466379 MST1RQ04912 1400 aa17.27■□□□□ 0.36
UBE4B-206ENST00000466379 GCP02774 474 aa17.27■□□□□ 0.36
UBE4B-206ENST00000466379 RGPD2P0DJD1 1756 aa17.27■□□□□ 0.36
UBE4B-206ENST00000466379 KDM4FA0A1W2PPD8 638 aa17.27■□□□□ 0.35
UBE4B-206ENST00000466379 NBPF6Q5VWK0 638 aa17.27■□□□□ 0.35
UBE4B-206ENST00000466379 NBPF4Q96M43 638 aa17.27■□□□□ 0.35
UBE4B-206ENST00000466379 LRRC59Q96AG4 307 aaKnown RBP17.26■□□□□ 0.35
UBE4B-206ENST00000466379 SLIT3O75094 1523 aa17.26■□□□□ 0.35
UBE4B-206ENST00000466379 NPM2Q86SE8 214 aaKnown RBP17.26■□□□□ 0.35
UBE4B-206ENST00000466379 RWDD1Q9H446 243 aaPredicted RBP17.24■□□□□ 0.35
UBE4B-206ENST00000466379 TSPYL4Q9UJ04 414 aa17.24■□□□□ 0.35
UBE4B-206ENST00000466379 MSH6P52701 1360 aa17.24■□□□□ 0.35
UBE4B-206ENST00000466379 GNAT3A8MTJ3 354 aa17.24■□□□□ 0.35
UBE4B-206ENST00000466379 ARHGEF25Q86VW2 580 aa17.24■□□□□ 0.35
UBE4B-206ENST00000466379 ERICH6Q7L0X2 663 aa17.23■□□□□ 0.35
UBE4B-206ENST00000466379 PHRF1Q9P1Y6 1649 aaKnown RBP17.23■□□□□ 0.35
UBE4B-206ENST00000466379 ZBTB40Q9NUA8 1239 aa17.23■□□□□ 0.35
UBE4B-206ENST00000466379 USP19O94966 1318 aa17.23■□□□□ 0.35
UBE4B-206ENST00000466379 ARHGAP45Q92619 1136 aa17.22■□□□□ 0.35
UBE4B-206ENST00000466379 PDZRN3Q9UPQ7 1066 aa17.22■□□□□ 0.35
UBE4B-206ENST00000466379 MAP3K5Q99683 1374 aa17.22■□□□□ 0.35
UBE4B-206ENST00000466379 LMTK3Q96Q04 1460 aa17.22■□□□□ 0.35
UBE4B-206ENST00000466379 KIAA0232Q92628 1395 aa17.22■□□□□ 0.35
UBE4B-206ENST00000466379 LRRC37A3O60309 1634 aa17.22■□□□□ 0.35
UBE4B-206ENST00000466379 ALS2Q96Q42 1657 aa17.21■□□□□ 0.35
UBE4B-206ENST00000466379 ANP32AP39687 249 aaKnown RBP17.21■□□□□ 0.35
UBE4B-206ENST00000466379 IL17REQ8NFR9 667 aa17.21■□□□□ 0.35
UBE4B-206ENST00000466379 STRCQ7RTU9 1775 aa17.21■□□□□ 0.34
UBE4B-206ENST00000466379 C8orf34Q49A92 452 aa17.21■□□□□ 0.34
UBE4B-206ENST00000466379 AXIN2Q9Y2T1 843 aa17.21■□□□□ 0.34
UBE4B-206ENST00000466379 ABCC4O15439 1325 aa17.2■□□□□ 0.34
UBE4B-206ENST00000466379 ZC3H6P61129 1189 aaKnown RBP17.2■□□□□ 0.34
UBE4B-206ENST00000466379 C1orf115Q9H7X2 142 aa17.2■□□□□ 0.34
UBE4B-206ENST00000466379 DCCP43146 1447 aa17.2■□□□□ 0.34
UBE4B-206ENST00000466379 MED1Q15648 1581 aaPredicted RBP17.2■□□□□ 0.34
UBE4B-206ENST00000466379 XIRP1Q702N8 1843 aaKnown RBP17.2■□□□□ 0.34
UBE4B-206ENST00000466379 HTATSF1O43719 755 aaKnown RBP17.19■□□□□ 0.34
UBE4B-206ENST00000466379 FAM161AQ3B820 660 aa17.19■□□□□ 0.34
UBE4B-206ENST00000466379 ANKRD24Q8TF21 1146 aa17.19■□□□□ 0.34
UBE4B-206ENST00000466379 CADPS2Q86UW7 1296 aa17.19■□□□□ 0.34
UBE4B-206ENST00000466379 NCOA3Q9Y6Q9 1424 aa17.18■□□□□ 0.34
UBE4B-206ENST00000466379 ZBTB7BO15156 539 aaPredicted RBP17.18■□□□□ 0.34
UBE4B-206ENST00000466379 API5Q9BZZ5 524 aaKnown RBP17.18■□□□□ 0.34
UBE4B-206ENST00000466379 RGPD5Q99666 1765 aa17.18■□□□□ 0.34
UBE4B-206ENST00000466379 HDAC1Q13547 482 aaPredicted RBP17.17■□□□□ 0.34
UBE4B-206ENST00000466379 CABLES1Q8TDN4 633 aa17.17■□□□□ 0.34
UBE4B-206ENST00000466379 SLC4A2P04920 1241 aa17.16■□□□□ 0.34
UBE4B-206ENST00000466379 HAP1P54257 671 aaPredicted RBP17.16■□□□□ 0.34
UBE4B-206ENST00000466379 ZNF335Q9H4Z2 1342 aaPredicted RBP17.15■□□□□ 0.34
UBE4B-206ENST00000466379 RGS12O14924 1447 aa17.15■□□□□ 0.34
UBE4B-206ENST00000466379 LGR6Q9HBX8 967 aa17.15■□□□□ 0.34
UBE4B-206ENST00000466379 NPHP3Q7Z494 1330 aa17.14■□□□□ 0.34
UBE4B-206ENST00000466379 NECTIN2Q92692 538 aa17.14■□□□□ 0.33
UBE4B-206ENST00000466379 TAF7Q15545 349 aaPredicted RBP17.14■□□□□ 0.33
UBE4B-206ENST00000466379 G2E3Q7L622 706 aa17.14■□□□□ 0.33
UBE4B-206ENST00000466379 IPO9Q96P70 1041 aaKnown RBP17.14■□□□□ 0.33
UBE4B-206ENST00000466379 ZNF530Q6P9A1 599 aaPredicted RBP17.13■□□□□ 0.33
UBE4B-206ENST00000466379 PXDNQ92626 1479 aa17.13■□□□□ 0.33
UBE4B-206ENST00000466379 TNS3Q68CZ2 1445 aa17.12■□□□□ 0.33
UBE4B-206ENST00000466379 PLEKHO1Q53GL0 409 aaPredicted RBP17.12■□□□□ 0.33
UBE4B-206ENST00000466379 MPRIPQ6WCQ1 1025 aa17.12■□□□□ 0.33
UBE4B-206ENST00000466379 SMC5Q8IY18 1101 aa17.12■□□□□ 0.33
UBE4B-206ENST00000466379 NCAPD2Q15021 1401 aa17.11■□□□□ 0.33
UBE4B-206ENST00000466379 BRINP3Q76B58 766 aa17.11■□□□□ 0.33
UBE4B-206ENST00000466379 CEMIPQ8WUJ3 1361 aa17.11■□□□□ 0.33
UBE4B-206ENST00000466379 LMO7Q8WWI1 1683 aa17.11■□□□□ 0.33
UBE4B-206ENST00000466379 CAMTA1Q9Y6Y1 1673 aa17.11■□□□□ 0.33
UBE4B-206ENST00000466379 ERBB3P21860 1342 aa17.11■□□□□ 0.33
UBE4B-206ENST00000466379 CHRNA2Q15822 529 aa17.1■□□□□ 0.33
UBE4B-206ENST00000466379 PTPRCP08575 1304 aa17.1■□□□□ 0.33
UBE4B-206ENST00000466379 AKAP4Q5JQC9 854 aa17.1■□□□□ 0.33
UBE4B-206ENST00000466379 INTS3Q68E01 1043 aaKnown RBP17.1■□□□□ 0.33
UBE4B-206ENST00000466379 CHMP4BQ9H444 224 aaKnown RBP17.1■□□□□ 0.33
UBE4B-206ENST00000466379 VIRMAQ69YN4 1812 aaKnown RBP17.1■□□□□ 0.33
UBE4B-206ENST00000466379 SPATA31A3Q5VYP0 1347 aa17.1■□□□□ 0.33
UBE4B-206ENST00000466379 FAM208AQ9UK61 1670 aaKnown RBP17.09■□□□□ 0.33
UBE4B-206ENST00000466379 F6X3S4 739 aa17.09■□□□□ 0.33
UBE4B-206ENST00000466379 SIRT2Q8IXJ6 389 aa17.09■□□□□ 0.33
UBE4B-206ENST00000466379 ARXQ96QS3 562 aa17.09■□□□□ 0.33
UBE4B-206ENST00000466379 NOP58Q9Y2X3 529 aaKnown RBP17.09■□□□□ 0.33
UBE4B-206ENST00000466379 KCNQ3O43525 872 aa17.08■□□□□ 0.33
UBE4B-206ENST00000466379 AMOTQ4VCS5 1084 aa17.08■□□□□ 0.32
UBE4B-206ENST00000466379 STK31Q9BXU1 1019 aa17.08■□□□□ 0.32
UBE4B-206ENST00000466379 NLRP2Q9NX02 1062 aa17.08■□□□□ 0.32
UBE4B-206ENST00000466379 C1orf141Q5JVX7 400 aa17.07■□□□□ 0.32
UBE4B-206ENST00000466379 SLC4A10Q6U841 1118 aa17.07■□□□□ 0.32
UBE4B-206ENST00000466379 ANP32EQ9BTT0 268 aa17.07■□□□□ 0.32
UBE4B-206ENST00000466379 CRYBG1Q9Y4K1 1723 aa17.07■□□□□ 0.32
UBE4B-206ENST00000466379 COL18A1P39060 1754 aa17.07■□□□□ 0.32
UBE4B-206ENST00000466379 SEC24BO95487 1268 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms