RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 GAS2L2Q8NHY3 880 aa23.37■■□□□ 1.33
COL9A3-205ENST00000466192 CHL1O00533 1208 aa23.37■■□□□ 1.33
COL9A3-205ENST00000466192 BRPF1P55201 1214 aaPredicted RBP23.37■■□□□ 1.33
COL9A3-205ENST00000466192 TWISTNBQ3B726 338 aaPredicted RBP23.37■■□□□ 1.33
COL9A3-205ENST00000466192 ARHGEF25Q86VW2 580 aa23.37■■□□□ 1.33
COL9A3-205ENST00000466192 DDX17Q92841 729 aaKnown RBP23.37■■□□□ 1.33
COL9A3-205ENST00000466192 MSH6P52701 1360 aa23.36■■□□□ 1.33
COL9A3-205ENST00000466192 USHBP1Q8N6Y0 703 aa23.36■■□□□ 1.33
COL9A3-205ENST00000466192 AAMPQ13685 434 aa23.35■■□□□ 1.33
COL9A3-205ENST00000466192 MSH5O43196 834 aa23.35■■□□□ 1.33
COL9A3-205ENST00000466192 IGHDP01880 384 aa23.35■■□□□ 1.33
COL9A3-205ENST00000466192 RGPD5Q99666 1765 aa23.34■■□□□ 1.33
COL9A3-205ENST00000466192 MED1Q15648 1581 aaPredicted RBP23.34■■□□□ 1.33
COL9A3-205ENST00000466192 PDE4AP27815 886 aa23.34■■□□□ 1.33
COL9A3-205ENST00000466192 NBPF6Q5VWK0 638 aa23.34■■□□□ 1.33
COL9A3-205ENST00000466192 MRPL50Q8N5N7 158 aaKnown RBP23.34■■□□□ 1.33
COL9A3-205ENST00000466192 RTF1Q92541 710 aaKnown RBP23.34■■□□□ 1.33
COL9A3-205ENST00000466192 NBPF4Q96M43 638 aa23.34■■□□□ 1.33
COL9A3-205ENST00000466192 IPO8O15397 1037 aaKnown RBP23.33■■□□□ 1.33
COL9A3-205ENST00000466192 LRRC37A3O60309 1634 aa23.33■■□□□ 1.33
COL9A3-205ENST00000466192 PCDHB15Q9Y5E8 787 aa23.32■■□□□ 1.32
COL9A3-205ENST00000466192 KRT24Q2M2I5 525 aa23.3■■□□□ 1.32
COL9A3-205ENST00000466192 BACH2Q9BYV9 841 aa23.3■■□□□ 1.32
COL9A3-205ENST00000466192 ZNF335Q9H4Z2 1342 aaPredicted RBP23.3■■□□□ 1.32
COL9A3-205ENST00000466192 HTATSF1O43719 755 aaKnown RBP23.3■■□□□ 1.32
COL9A3-205ENST00000466192 TMEM57Q8N5G2 664 aa23.3■■□□□ 1.32
COL9A3-205ENST00000466192 LRRC59Q96AG4 307 aaKnown RBP23.3■■□□□ 1.32
COL9A3-205ENST00000466192 NPHP3Q7Z494 1330 aa23.29■■□□□ 1.32
COL9A3-205ENST00000466192 GNAT3A8MTJ3 354 aa23.29■■□□□ 1.32
COL9A3-205ENST00000466192 KIAA0232Q92628 1395 aa23.29■■□□□ 1.32
COL9A3-205ENST00000466192 ITPRIPQ8IWB1 547 aa23.28■■□□□ 1.32
COL9A3-205ENST00000466192 MIS18AQ9NYP9 233 aa23.28■■□□□ 1.32
COL9A3-205ENST00000466192 PXDNQ92626 1479 aa23.28■■□□□ 1.32
COL9A3-205ENST00000466192 DDX19BQ9UMR2 479 aa23.28■■□□□ 1.32
COL9A3-205ENST00000466192 MAP3K5Q99683 1374 aa23.28■■□□□ 1.32
COL9A3-205ENST00000466192 AXIN2Q9Y2T1 843 aa23.27■■□□□ 1.32
COL9A3-205ENST00000466192 RGS3P49796 1198 aa23.27■■□□□ 1.32
COL9A3-205ENST00000466192 ARHGAP45Q92619 1136 aa23.27■■□□□ 1.32
COL9A3-205ENST00000466192 CAMTA1Q9Y6Y1 1673 aa23.26■■□□□ 1.31
COL9A3-205ENST00000466192 ANKRD24Q8TF21 1146 aa23.25■■□□□ 1.31
COL9A3-205ENST00000466192 NCAPD2Q15021 1401 aa23.25■■□□□ 1.31
COL9A3-205ENST00000466192 TNS3Q68CZ2 1445 aa23.25■■□□□ 1.31
COL9A3-205ENST00000466192 ZC3H6P61129 1189 aaKnown RBP23.25■■□□□ 1.31
COL9A3-205ENST00000466192 TSPYL4Q9UJ04 414 aa23.25■■□□□ 1.31
COL9A3-205ENST00000466192 CRYBG1Q9Y4K1 1723 aa23.25■■□□□ 1.31
COL9A3-205ENST00000466192 IL17REQ8NFR9 667 aa23.24■■□□□ 1.31
COL9A3-205ENST00000466192 ANP32AP39687 249 aaKnown RBP23.24■■□□□ 1.31
COL9A3-205ENST00000466192 BRINP3Q76B58 766 aa23.23■■□□□ 1.31
COL9A3-205ENST00000466192 COL18A1P39060 1754 aa23.22■■□□□ 1.31
COL9A3-205ENST00000466192 VIRMAQ69YN4 1812 aaKnown RBP23.22■■□□□ 1.31
COL9A3-205ENST00000466192 HAP1P54257 671 aaPredicted RBP23.21■■□□□ 1.31
COL9A3-205ENST00000466192 LMO7Q8WWI1 1683 aa23.21■■□□□ 1.31
COL9A3-205ENST00000466192 SPATA31A3Q5VYP0 1347 aa23.21■■□□□ 1.31
COL9A3-205ENST00000466192 ZBTB40Q9NUA8 1239 aa23.21■■□□□ 1.31
COL9A3-205ENST00000466192 CABLES1Q8TDN4 633 aa23.2■■□□□ 1.3
COL9A3-205ENST00000466192 NPM2Q86SE8 214 aaKnown RBP23.2■■□□□ 1.3
COL9A3-205ENST00000466192 ABCC4O15439 1325 aa23.2■■□□□ 1.3
COL9A3-205ENST00000466192 RWDD1Q9H446 243 aaPredicted RBP23.19■■□□□ 1.3
COL9A3-205ENST00000466192 ERBB3P21860 1342 aa23.18■■□□□ 1.3
COL9A3-205ENST00000466192 SLAIN2Q9P270 581 aa23.18■■□□□ 1.3
COL9A3-205ENST00000466192 CEMIPQ8WUJ3 1361 aa23.17■■□□□ 1.3
COL9A3-205ENST00000466192 API5Q9BZZ5 524 aaKnown RBP23.17■■□□□ 1.3
COL9A3-205ENST00000466192 TAF7Q15545 349 aaPredicted RBP23.16■■□□□ 1.3
COL9A3-205ENST00000466192 PLEKHO1Q53GL0 409 aaPredicted RBP23.16■■□□□ 1.3
COL9A3-205ENST00000466192 ZBTB7BO15156 539 aaPredicted RBP23.15■■□□□ 1.3
COL9A3-205ENST00000466192 ZNF530Q6P9A1 599 aaPredicted RBP23.14■■□□□ 1.3
COL9A3-205ENST00000466192 LGR6Q9HBX8 967 aa23.14■■□□□ 1.3
COL9A3-205ENST00000466192 BABAM1Q9NWV8 329 aa23.14■■□□□ 1.3
COL9A3-205ENST00000466192 FAM161AQ3B820 660 aa23.14■■□□□ 1.29
COL9A3-205ENST00000466192 AMOTQ4VCS5 1084 aa23.14■■□□□ 1.29
COL9A3-205ENST00000466192 ERICH6Q7L0X2 663 aa23.14■■□□□ 1.29
COL9A3-205ENST00000466192 IPO9Q96P70 1041 aaKnown RBP23.14■■□□□ 1.29
COL9A3-205ENST00000466192 RGS12O14924 1447 aa23.14■■□□□ 1.29
COL9A3-205ENST00000466192 HDAC1Q13547 482 aaPredicted RBP23.13■■□□□ 1.29
COL9A3-205ENST00000466192 FAM208AQ9UK61 1670 aaKnown RBP23.13■■□□□ 1.29
COL9A3-205ENST00000466192 CACNA1FO60840 1977 aa23.13■■□□□ 1.29
COL9A3-205ENST00000466192 C8orf34Q49A92 452 aa23.13■■□□□ 1.29
COL9A3-205ENST00000466192 AKAP4Q5JQC9 854 aa23.13■■□□□ 1.29
COL9A3-205ENST00000466192 KDM3BQ7LBC6 1761 aa23.12■■□□□ 1.29
COL9A3-205ENST00000466192 SOS2Q07890 1332 aaPredicted RBP23.12■■□□□ 1.29
COL9A3-205ENST00000466192 SLC4A2P04920 1241 aa23.11■■□□□ 1.29
COL9A3-205ENST00000466192 ABCC6O95255 1503 aa23.11■■□□□ 1.29
COL9A3-205ENST00000466192 CHRNA2Q15822 529 aa23.11■■□□□ 1.29
COL9A3-205ENST00000466192 PDZRN3Q9UPQ7 1066 aa23.1■■□□□ 1.29
COL9A3-205ENST00000466192 PTPRCP08575 1304 aa23.09■■□□□ 1.29
COL9A3-205ENST00000466192 CPDO75976 1380 aa23.09■■□□□ 1.29
COL9A3-205ENST00000466192 MPRIPQ6WCQ1 1025 aa23.09■■□□□ 1.29
COL9A3-205ENST00000466192 CHMP4BQ9H444 224 aaKnown RBP23.08■■□□□ 1.29
COL9A3-205ENST00000466192 NLRP2Q9NX02 1062 aa23.08■■□□□ 1.29
COL9A3-205ENST00000466192 NOP58Q9Y2X3 529 aaKnown RBP23.08■■□□□ 1.29
COL9A3-205ENST00000466192 C1orf141Q5JVX7 400 aa23.07■■□□□ 1.28
COL9A3-205ENST00000466192 INTS3Q68E01 1043 aaKnown RBP23.07■■□□□ 1.28
COL9A3-205ENST00000466192 G2E3Q7L622 706 aa23.07■■□□□ 1.28
COL9A3-205ENST00000466192 NHSL1Q5SYE7 1610 aa23.07■■□□□ 1.28
COL9A3-205ENST00000466192 C1orf115Q9H7X2 142 aa23.06■■□□□ 1.28
COL9A3-205ENST00000466192 ABCA3Q99758 1704 aa23.06■■□□□ 1.28
COL9A3-205ENST00000466192 SIPA1L3O60292 1781 aaPredicted RBP23.06■■□□□ 1.28
COL9A3-205ENST00000466192 RNMTO43148 476 aaKnown RBP23.06■■□□□ 1.28
COL9A3-205ENST00000466192 SOS1Q07889 1333 aaPredicted RBP23.05■■□□□ 1.28
COL9A3-205ENST00000466192 ADAMTS7Q9UKP4 1686 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 198.1 ms