RNA–Protein interactions for RNA: ENST00000465522.5

ITGA4-204, Transcript of integrin subunit alpha 4, humanhuman

TSL 2

Gene ITGA4, Length 1,721 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA4-204ENST00000465522 IL16Q14005 1332 aa28.32■■■□□ 2.12
ITGA4-204ENST00000465522 GNAT3A8MTJ3 354 aa28.31■■■□□ 2.12
ITGA4-204ENST00000465522 DCTN1Q14203 1278 aa28.31■■■□□ 2.12
ITGA4-204ENST00000465522 THUMPD2Q9BTF0 503 aaKnown RBP28.3■■■□□ 2.12
ITGA4-204ENST00000465522 MYH16Q9H6N6 1097 aa28.3■■■□□ 2.12
ITGA4-204ENST00000465522 HTATSF1O43719 755 aaKnown RBP28.29■■■□□ 2.12
ITGA4-204ENST00000465522 CRB1P82279 1406 aa28.29■■■□□ 2.12
ITGA4-204ENST00000465522 MCM10Q7L590 875 aa28.28■■■□□ 2.12
ITGA4-204ENST00000465522 PLCH1Q4KWH8 1693 aa28.28■■■□□ 2.12
ITGA4-204ENST00000465522 ZNF530Q6P9A1 599 aaPredicted RBP28.27■■■□□ 2.12
ITGA4-204ENST00000465522 MAP3K5Q99683 1374 aa28.26■■■□□ 2.12
ITGA4-204ENST00000465522 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.26■■■□□ 2.11
ITGA4-204ENST00000465522 USP35Q9P2H5 1018 aa28.26■■■□□ 2.11
ITGA4-204ENST00000465522 MEGF6O75095 1541 aa28.25■■■□□ 2.11
ITGA4-204ENST00000465522 C1orf141Q5JVX7 400 aa28.25■■■□□ 2.11
ITGA4-204ENST00000465522 NGLY1Q96IV0 654 aa28.25■■■□□ 2.11
ITGA4-204ENST00000465522 SPG7Q9UQ90 795 aa28.25■■■□□ 2.11
ITGA4-204ENST00000465522 LAS1LQ9Y4W2 734 aaKnown RBP28.25■■■□□ 2.11
ITGA4-204ENST00000465522 AKAP4Q5JQC9 854 aa28.24■■■□□ 2.11
ITGA4-204ENST00000465522 C8orf37Q96NL8 207 aa28.24■■■□□ 2.11
ITGA4-204ENST00000465522 PLEKHG2Q9H7P9 1386 aa28.24■■■□□ 2.11
ITGA4-204ENST00000465522 SUPT16HQ9Y5B9 1047 aaKnown RBP28.23■■■□□ 2.11
ITGA4-204ENST00000465522 IL2RBP14784 551 aa28.23■■■□□ 2.11
ITGA4-204ENST00000465522 GNAI1P63096 354 aa28.23■■■□□ 2.11
ITGA4-204ENST00000465522 IFT57Q9NWB7 429 aa28.23■■■□□ 2.11
ITGA4-204ENST00000465522 NWD2Q9ULI1 1742 aa28.22■■■□□ 2.11
ITGA4-204ENST00000465522 SLIT2O94813 1529 aa28.22■■■□□ 2.11
ITGA4-204ENST00000465522 TSR2Q969E8 191 aaKnown RBP28.21■■■□□ 2.11
ITGA4-204ENST00000465522 CFAP44Q96MT7 982 aa28.21■■■□□ 2.11
ITGA4-204ENST00000465522 FANCIQ9NVI1 1328 aa28.2■■■□□ 2.1
ITGA4-204ENST00000465522 IL17REQ8NFR9 667 aa28.2■■■□□ 2.1
ITGA4-204ENST00000465522 RCAN3Q9UKA8 241 aa28.2■■■□□ 2.1
ITGA4-204ENST00000465522 LRP6O75581 1613 aa28.19■■■□□ 2.1
ITGA4-204ENST00000465522 ZNF853P0CG23 659 aa28.19■■■□□ 2.1
ITGA4-204ENST00000465522 OVOS2A0A0G2JMS6 1433 aa28.19■■■□□ 2.1
ITGA4-204ENST00000465522 NRAPQ86VF7 1730 aa28.18■■■□□ 2.1
ITGA4-204ENST00000465522 MEX3CQ5U5Q3 659 aaKnown RBP28.18■■■□□ 2.1
ITGA4-204ENST00000465522 PARP4Q9UKK3 1724 aaKnown RBP28.18■■■□□ 2.1
ITGA4-204ENST00000465522 UNC5CLQ8IV45 518 aa28.18■■■□□ 2.1
ITGA4-204ENST00000465522 ZCRB1Q8TBF4 217 aaKnown RBP28.17■■■□□ 2.1
ITGA4-204ENST00000465522 MPRIPQ6WCQ1 1025 aa28.16■■■□□ 2.1
ITGA4-204ENST00000465522 IFNL2Q8IZJ0 200 aa28.16■■■□□ 2.1
ITGA4-204ENST00000465522 FNBP4Q8N3X1 1017 aaPredicted RBP28.15■■■□□ 2.1
ITGA4-204ENST00000465522 LGR6Q9HBX8 967 aa28.15■■■□□ 2.1
ITGA4-204ENST00000465522 PKD1L3Q7Z443 1732 aa28.15■■■□□ 2.1
ITGA4-204ENST00000465522 MBIPQ9NS73 344 aa28.15■■■□□ 2.1
ITGA4-204ENST00000465522 PHKG2P15735 406 aa28.14■■■□□ 2.1
ITGA4-204ENST00000465522 CCDC9Q9Y3X0 531 aaKnown RBP28.14■■■□□ 2.1
ITGA4-204ENST00000465522 SPATA31A1Q5TZJ5 1347 aa28.14■■■□□ 2.09
ITGA4-204ENST00000465522 CHL1O00533 1208 aa28.13■■■□□ 2.09
ITGA4-204ENST00000465522 THRAP3Q9Y2W1 955 aaKnown RBP28.13■■■□□ 2.09
ITGA4-204ENST00000465522 CYP27B1O15528 508 aa28.12■■■□□ 2.09
ITGA4-204ENST00000465522 RNMTO43148 476 aaKnown RBP28.12■■■□□ 2.09
ITGA4-204ENST00000465522 EXOSC9Q06265 439 aaKnown RBP28.12■■■□□ 2.09
ITGA4-204ENST00000465522 CEMIPQ8WUJ3 1361 aa28.12■■■□□ 2.09
ITGA4-204ENST00000465522 SPATA31A5Q5VU36 1347 aa28.12■■■□□ 2.09
ITGA4-204ENST00000465522 SPATA31A7Q8IWB4 1347 aa28.12■■■□□ 2.09
ITGA4-204ENST00000465522 TAF7Q15545 349 aaPredicted RBP28.11■■■□□ 2.09
ITGA4-204ENST00000465522 PCDH11XQ9BZA7 1347 aa28.11■■■□□ 2.09
ITGA4-204ENST00000465522 PCDH11YQ9BZA8 1340 aa28.11■■■□□ 2.09
ITGA4-204ENST00000465522 BCL9LQ86UU0 1499 aa28.11■■■□□ 2.09
ITGA4-204ENST00000465522 USP21Q9UK80 565 aa28.1■■■□□ 2.09
ITGA4-204ENST00000465522 VIRMAQ69YN4 1812 aaKnown RBP28.1■■■□□ 2.09
ITGA4-204ENST00000465522 HSP90AB1P08238 724 aaKnown RBP28.09■■■□□ 2.09
ITGA4-204ENST00000465522 TEFQ10587 303 aa28.09■■■□□ 2.09
ITGA4-204ENST00000465522 MIS18AQ9NYP9 233 aa28.09■■■□□ 2.09
ITGA4-204ENST00000465522 LRRC37A3O60309 1634 aa28.09■■■□□ 2.09
ITGA4-204ENST00000465522 CT47B1P0C2W7 299 aaPredicted RBP28.08■■■□□ 2.09
ITGA4-204ENST00000465522 VPS72Q15906 364 aa28.08■■■□□ 2.09
ITGA4-204ENST00000465522 CDCA7Q9BWT1 371 aaPredicted RBP28.08■■■□□ 2.09
ITGA4-204ENST00000465522 TSPYL4Q9UJ04 414 aa28.08■■■□□ 2.09
ITGA4-204ENST00000465522 DISP2A7MBM2 1401 aa28.07■■■□□ 2.08
ITGA4-204ENST00000465522 DDX54Q8TDD1 881 aaKnown RBP28.07■■■□□ 2.08
ITGA4-204ENST00000465522 DCAF5Q96JK2 942 aa28.06■■■□□ 2.08
ITGA4-204ENST00000465522 BABAM1Q9NWV8 329 aa28.06■■■□□ 2.08
ITGA4-204ENST00000465522 NEFLP07196 543 aa28.06■■■□□ 2.08
ITGA4-204ENST00000465522 GTF3C3Q9Y5Q9 886 aa28.06■■■□□ 2.08
ITGA4-204ENST00000465522 EXOC5O00471 708 aa28.05■■■□□ 2.08
ITGA4-204ENST00000465522 AFF2P51816 1311 aa28.04■■■□□ 2.08
ITGA4-204ENST00000465522 BARGINQ6ZT62 677 aa28.04■■■□□ 2.08
ITGA4-204ENST00000465522 SCN11AQ9UI33 1791 aa28.03■■■□□ 2.08
ITGA4-204ENST00000465522 RNF123Q5XPI4 1314 aa28.03■■■□□ 2.08
ITGA4-204ENST00000465522 FBXO41Q8TF61 875 aa28.03■■■□□ 2.08
ITGA4-204ENST00000465522 ADAMTS7Q9UKP4 1686 aa28.02■■■□□ 2.08
ITGA4-204ENST00000465522 KDM6AO15550 1401 aaPredicted RBP28.02■■■□□ 2.08
ITGA4-204ENST00000465522 WNK3Q9BYP7 1800 aa28.02■■■□□ 2.08
ITGA4-204ENST00000465522 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.02■■■□□ 2.08
ITGA4-204ENST00000465522 SHANK3Q9BYB0 1731 aa28.01■■■□□ 2.07
ITGA4-204ENST00000465522 ELL2O00472 640 aaPredicted RBP28.01■■■□□ 2.07
ITGA4-204ENST00000465522 RARSP54136 660 aaKnown RBP28.01■■■□□ 2.07
ITGA4-204ENST00000465522 NKX1-1Q15270 411 aaPredicted RBP28.01■■■□□ 2.07
ITGA4-204ENST00000465522 C8orf58Q8NAV2 365 aa28.01■■■□□ 2.07
ITGA4-204ENST00000465522 BTBD11A6QL63 1104 aa28■■■□□ 2.07
ITGA4-204ENST00000465522 RRP1P56182 461 aaKnown RBP27.99■■■□□ 2.07
ITGA4-204ENST00000465522 TWISTNBQ3B726 338 aaPredicted RBP27.99■■■□□ 2.07
ITGA4-204ENST00000465522 TSPYL6Q8N831 410 aa27.99■■■□□ 2.07
ITGA4-204ENST00000465522 SLC52A2Q9HAB3 445 aa27.99■■■□□ 2.07
ITGA4-204ENST00000465522 VAMP4O75379 141 aa27.98■■■□□ 2.07
ITGA4-204ENST00000465522 BCAR3O75815 825 aa27.98■■■□□ 2.07
ITGA4-204ENST00000465522 DDB1Q16531 1140 aa27.98■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms