RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 PARD3Q8TEW0 1356 aa15.74■□□□□ 0.11
CUX1-207ENST00000465461 HMOX1P09601 288 aa15.73■□□□□ 0.11
CUX1-207ENST00000465461 SF3B2Q13435 895 aaKnown RBP15.73■□□□□ 0.11
CUX1-207ENST00000465461 SHANK3Q9BYB0 1731 aa15.73■□□□□ 0.11
CUX1-207ENST00000465461 COL3A1P02461 1466 aaPredicted RBP15.72■□□□□ 0.11
CUX1-207ENST00000465461 U2SURPO15042 1029 aaKnown RBP15.72■□□□□ 0.11
CUX1-207ENST00000465461 KCNQ2O43526 872 aa15.72■□□□□ 0.11
CUX1-207ENST00000465461 CCDC125Q86Z20 511 aa15.72■□□□□ 0.11
CUX1-207ENST00000465461 EP400Q96L91 3159 aa15.71■□□□□ 0.11
CUX1-207ENST00000465461 APBA3O96018 575 aa15.71■□□□□ 0.11
CUX1-207ENST00000465461 EN1Q05925 392 aaPredicted RBP15.71■□□□□ 0.11
CUX1-207ENST00000465461 RGPD1P0DJD0 1748 aa15.71■□□□□ 0.1
CUX1-207ENST00000465461 CYP27B1O15528 508 aa15.7■□□□□ 0.1
CUX1-207ENST00000465461 SBF2Q86WG5 1849 aa15.7■□□□□ 0.1
CUX1-207ENST00000465461 TNS1Q9HBL0 1735 aaKnown RBP15.69■□□□□ 0.1
CUX1-207ENST00000465461 CFAP53Q96M91 514 aa15.69■□□□□ 0.1
CUX1-207ENST00000465461 RALBP1Q15311 655 aa15.68■□□□□ 0.1
CUX1-207ENST00000465461 EZH2Q15910 746 aaKnown RBP15.68■□□□□ 0.1
CUX1-207ENST00000465461 SPG7Q9UQ90 795 aa15.68■□□□□ 0.1
CUX1-207ENST00000465461 PCDH11XQ9BZA7 1347 aa15.68■□□□□ 0.1
CUX1-207ENST00000465461 PCDH11YQ9BZA8 1340 aa15.68■□□□□ 0.1
CUX1-207ENST00000465461 BAG6P46379 1132 aa15.67■□□□□ 0.1
CUX1-207ENST00000465461 SYTL4Q96C24 671 aaPredicted RBP15.67■□□□□ 0.1
CUX1-207ENST00000465461 BCL11BQ9C0K0 894 aaPredicted RBP15.67■□□□□ 0.1
CUX1-207ENST00000465461 PKD1L3Q7Z443 1732 aa15.67■□□□□ 0.1
CUX1-207ENST00000465461 KAT6BQ8WYB5 2073 aa15.67■□□□□ 0.1
CUX1-207ENST00000465461 BCL9O00512 1426 aa15.67■□□□□ 0.1
CUX1-207ENST00000465461 PRIM1P49642 420 aaKnown RBP15.66■□□□□ 0.1
CUX1-207ENST00000465461 PRKRIP1Q9H875 184 aaPredicted RBP15.66■□□□□ 0.1
CUX1-207ENST00000465461 KDRP35968 1356 aa15.65■□□□□ 0.1
CUX1-207ENST00000465461 PHKG2P15735 406 aa15.65■□□□□ 0.1
CUX1-207ENST00000465461 PLEKHO1Q53GL0 409 aaPredicted RBP15.65■□□□□ 0.1
CUX1-207ENST00000465461 U2AF1L5P0DN76 240 aaPredicted RBP15.64■□□□□ 0.09
CUX1-207ENST00000465461 U2AF1Q01081 240 aaKnown RBP eCLIP15.64■□□□□ 0.09
CUX1-207ENST00000465461 DOT1LQ8TEK3 1739 aa15.64■□□□□ 0.09
CUX1-207ENST00000465461 CAMKK2Q96RR4 588 aa15.64■□□□□ 0.09
CUX1-207ENST00000465461 MYBBP1AQ9BQG0 1328 aaKnown RBP15.64■□□□□ 0.09
CUX1-207ENST00000465461 ZNF530Q6P9A1 599 aaPredicted RBP15.63■□□□□ 0.09
CUX1-207ENST00000465461 IFNL2Q8IZJ0 200 aa15.63■□□□□ 0.09
CUX1-207ENST00000465461 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.63■□□□□ 0.093e-9■■□□□ 12.6
CUX1-207ENST00000465461 NUDCQ9Y266 331 aa15.63■□□□□ 0.09
CUX1-207ENST00000465461 NHSQ6T4R5 1651 aa15.63■□□□□ 0.09
CUX1-207ENST00000465461 MTHFSDQ2M296 383 aaKnown RBP15.62■□□□□ 0.09
CUX1-207ENST00000465461 AMOTQ4VCS5 1084 aa15.62■□□□□ 0.09
CUX1-207ENST00000465461 TOGARAM1Q9Y4F4 1720 aa15.61■□□□□ 0.09
CUX1-207ENST00000465461 MSH5O43196 834 aa15.61■□□□□ 0.09
CUX1-207ENST00000465461 PRKAR2BP31323 418 aa15.61■□□□□ 0.09
CUX1-207ENST00000465461 NKX1-1Q15270 411 aaPredicted RBP15.61■□□□□ 0.09
CUX1-207ENST00000465461 MPRIPQ6WCQ1 1025 aa15.61■□□□□ 0.09
CUX1-207ENST00000465461 POTEDQ86YR6 584 aa15.61■□□□□ 0.09
CUX1-207ENST00000465461 BTAF1O14981 1849 aa15.6■□□□□ 0.09
CUX1-207ENST00000465461 PROM2Q8N271 834 aa15.6■□□□□ 0.09
CUX1-207ENST00000465461 PHACTR3Q96KR7 559 aa15.6■□□□□ 0.09
CUX1-207ENST00000465461 RSPH6AQ9H0K4 717 aa15.6■□□□□ 0.09
CUX1-207ENST00000465461 C1orf141Q5JVX7 400 aa15.59■□□□□ 0.09
CUX1-207ENST00000465461 PLSCR1O15162 318 aa15.58■□□□□ 0.08
CUX1-207ENST00000465461 KCNQ4P56696 695 aa15.58■□□□□ 0.08
CUX1-207ENST00000465461 CCDC184Q52MB2 194 aa15.58■□□□□ 0.08
CUX1-207ENST00000465461 PIGBQ92521 554 aa15.57■□□□□ 0.08
CUX1-207ENST00000465461 LGR6Q9HBX8 967 aa15.57■□□□□ 0.08
CUX1-207ENST00000465461 KDM6AO15550 1401 aaPredicted RBP15.57■□□□□ 0.08
CUX1-207ENST00000465461 ITGB4P16144 1822 aa15.57■□□□□ 0.08
CUX1-207ENST00000465461 ANP32CO43423 234 aa15.56■□□□□ 0.08
CUX1-207ENST00000465461 FCHSD2O94868 740 aa15.56■□□□□ 0.08
CUX1-207ENST00000465461 TXNRD1Q16881 649 aa15.56■□□□□ 0.08
CUX1-207ENST00000465461 AKAP4Q5JQC9 854 aa15.56■□□□□ 0.08
CUX1-207ENST00000465461 PLEKHG2Q9H7P9 1386 aa15.55■□□□□ 0.08
CUX1-207ENST00000465461 PSDA5PKW4 1024 aaPredicted RBP15.55■□□□□ 0.08
CUX1-207ENST00000465461 DCAF5Q96JK2 942 aa15.55■□□□□ 0.08
CUX1-207ENST00000465461 RREB1Q92766 1687 aa15.54■□□□□ 0.08
CUX1-207ENST00000465461 HSP90AB1P08238 724 aaKnown RBP15.54■□□□□ 0.08
CUX1-207ENST00000465461 LRRC4BQ9NT99 713 aa15.54■□□□□ 0.08
CUX1-207ENST00000465461 TMOD3Q9NYL9 352 aa15.54■□□□□ 0.08
CUX1-207ENST00000465461 NUP188Q5SRE5 1749 aa15.54■□□□□ 0.08
CUX1-207ENST00000465461 RNMTO43148 476 aaKnown RBP15.53■□□□□ 0.08
CUX1-207ENST00000465461 CABP4P57796 275 aa15.53■□□□□ 0.08
CUX1-207ENST00000465461 PLEKHF1Q96S99 279 aa15.53■□□□□ 0.08
CUX1-207ENST00000465461 ASAP1Q9ULH1 1129 aa15.53■□□□□ 0.08
CUX1-207ENST00000465461 R3HDM1Q15032 1099 aaKnown RBP15.52■□□□□ 0.08
CUX1-207ENST00000465461 CCDC146Q8IYE0 955 aa15.52■□□□□ 0.08
CUX1-207ENST00000465461 NFATC2IPQ8NCF5 419 aa15.52■□□□□ 0.08
CUX1-207ENST00000465461 GAS2L2Q8NHY3 880 aa15.52■□□□□ 0.08
CUX1-207ENST00000465461 ANO8Q9HCE9 1232 aaPredicted RBP15.52■□□□□ 0.08
CUX1-207ENST00000465461 ERVV-2B6SEH9 535 aa15.51■□□□□ 0.07
CUX1-207ENST00000465461 IL17REQ8NFR9 667 aa15.51■□□□□ 0.07
CUX1-207ENST00000465461 ATG3Q9NT62 314 aa15.51■□□□□ 0.07
CUX1-207ENST00000465461 ADAMTS8Q9UP79 889 aa15.51■□□□□ 0.07
CUX1-207ENST00000465461 RGPD3A6NKT7 1758 aaPredicted RBP15.51■□□□□ 0.07
CUX1-207ENST00000465461 RGPD4Q7Z3J3 1758 aa15.51■□□□□ 0.07
CUX1-207ENST00000465461 PALLDQ8WX93 1383 aa15.5■□□□□ 0.07
CUX1-207ENST00000465461 GNAT3A8MTJ3 354 aa15.5■□□□□ 0.07
CUX1-207ENST00000465461 DCTN1Q14203 1278 aa15.5■□□□□ 0.07
CUX1-207ENST00000465461 WDR43Q15061 677 aaKnown RBP eCLIP15.5■□□□□ 0.07
CUX1-207ENST00000465461 MAP3K5Q99683 1374 aa15.49■□□□□ 0.07
CUX1-207ENST00000465461 SCN11AQ9UI33 1791 aa15.49■□□□□ 0.07
CUX1-207ENST00000465461 NBPF14Q5TI25 921 aa15.49■□□□□ 0.07
CUX1-207ENST00000465461 CCNL1Q9UK58 526 aaPredicted RBP15.49■□□□□ 0.07
CUX1-207ENST00000465461 VIRMAQ69YN4 1812 aaKnown RBP15.49■□□□□ 0.07
CUX1-207ENST00000465461 LY75O60449 1722 aa15.48■□□□□ 0.07
CUX1-207ENST00000465461 MCM10Q7L590 875 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms