RNA–Protein interactions for RNA: ENST00000465039.5

LIMD1-203, Transcript of LIM domains containing 1, humanhuman

TSL 5

Gene LIMD1, Length 676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-203ENST00000465039 UPF1Q92900 1129 aaKnown RBP eCLIP18.45■□□□□ 0.54
LIMD1-203ENST00000465039 MYBBP1AQ9BQG0 1328 aaKnown RBP18.44■□□□□ 0.54
LIMD1-203ENST00000465039 PCDH11XQ9BZA7 1347 aa18.44■□□□□ 0.54
LIMD1-203ENST00000465039 PCDH11YQ9BZA8 1340 aa18.44■□□□□ 0.54
LIMD1-203ENST00000465039 ZCRB1Q8TBF4 217 aaKnown RBP18.43■□□□□ 0.54
LIMD1-203ENST00000465039 USHBP1Q8N6Y0 703 aa18.42■□□□□ 0.54
LIMD1-203ENST00000465039 MARCH10Q8NA82 808 aaPredicted RBP18.42■□□□□ 0.54
LIMD1-203ENST00000465039 TNS1Q9HBL0 1735 aaKnown RBP18.41■□□□□ 0.54
LIMD1-203ENST00000465039 PRKRIP1Q9H875 184 aaPredicted RBP18.41■□□□□ 0.54
LIMD1-203ENST00000465039 SPG7Q9UQ90 795 aa18.41■□□□□ 0.54
LIMD1-203ENST00000465039 NUDCQ9Y266 331 aa18.41■□□□□ 0.54
LIMD1-203ENST00000465039 SBF2Q86WG5 1849 aa18.41■□□□□ 0.54
LIMD1-203ENST00000465039 RGPD3A6NKT7 1758 aaPredicted RBP18.4■□□□□ 0.54
LIMD1-203ENST00000465039 RGPD4Q7Z3J3 1758 aa18.4■□□□□ 0.54
LIMD1-203ENST00000465039 AMOTQ4VCS5 1084 aa18.4■□□□□ 0.54
LIMD1-203ENST00000465039 NHSQ6T4R5 1651 aa18.4■□□□□ 0.54
LIMD1-203ENST00000465039 SF3B2Q13435 895 aaKnown RBP18.38■□□□□ 0.53
LIMD1-203ENST00000465039 CNGB1Q14028 1251 aaPredicted RBP18.38■□□□□ 0.53
LIMD1-203ENST00000465039 SULT6B1Q6IMI4 303 aa18.38■□□□□ 0.53
LIMD1-203ENST00000465039 NKX1-1Q15270 411 aaPredicted RBP18.36■□□□□ 0.53
LIMD1-203ENST00000465039 BCL11BQ9C0K0 894 aaPredicted RBP18.36■□□□□ 0.53
LIMD1-203ENST00000465039 PLEKHO1Q53GL0 409 aaPredicted RBP18.35■□□□□ 0.53
LIMD1-203ENST00000465039 HSP90AB1P08238 724 aaKnown RBP18.34■□□□□ 0.53
LIMD1-203ENST00000465039 BAG6P46379 1132 aa18.34■□□□□ 0.53
LIMD1-203ENST00000465039 FAM182BQ5T319 152 aa18.34■□□□□ 0.53
LIMD1-203ENST00000465039 AEBP1Q8IUX7 1158 aa18.34■□□□□ 0.53
LIMD1-203ENST00000465039 DOT1LQ8TEK3 1739 aa18.33■□□□□ 0.52
LIMD1-203ENST00000465039 CYP27B1O15528 508 aa18.33■□□□□ 0.52
LIMD1-203ENST00000465039 FCHSD2O94868 740 aa18.33■□□□□ 0.52
LIMD1-203ENST00000465039 IFNL2Q8IZJ0 200 aa18.33■□□□□ 0.52
LIMD1-203ENST00000465039 DDX54Q8TDD1 881 aaKnown RBP18.33■□□□□ 0.52
LIMD1-203ENST00000465039 U2SURPO15042 1029 aaKnown RBP18.32■□□□□ 0.52
LIMD1-203ENST00000465039 TRIM37O94972 964 aa18.32■□□□□ 0.52
LIMD1-203ENST00000465039 PHKG2P15735 406 aa18.31■□□□□ 0.52
LIMD1-203ENST00000465039 PLSCR1O15162 318 aa18.3■□□□□ 0.52
LIMD1-203ENST00000465039 PNNQ9H307 717 aaKnown RBP18.3■□□□□ 0.52
LIMD1-203ENST00000465039 ADAMTS7Q9UKP4 1686 aa18.29■□□□□ 0.52
LIMD1-203ENST00000465039 ANP32CO43423 234 aa18.29■□□□□ 0.52
LIMD1-203ENST00000465039 U2AF1L5P0DN76 240 aaPredicted RBP18.29■□□□□ 0.52
LIMD1-203ENST00000465039 U2AF1Q01081 240 aaKnown RBP eCLIP18.29■□□□□ 0.52
LIMD1-203ENST00000465039 DCAF5Q96JK2 942 aa18.29■□□□□ 0.52
LIMD1-203ENST00000465039 RSPH6AQ9H0K4 717 aa18.29■□□□□ 0.52
LIMD1-203ENST00000465039 BTAF1O14981 1849 aa18.28■□□□□ 0.52
LIMD1-203ENST00000465039 HMOX1P09601 288 aa18.28■□□□□ 0.52
LIMD1-203ENST00000465039 C1orf141Q5JVX7 400 aa18.28■□□□□ 0.52
LIMD1-203ENST00000465039 ZNF530Q6P9A1 599 aaPredicted RBP18.28■□□□□ 0.52
LIMD1-203ENST00000465039 GAS2L2Q8NHY3 880 aa18.28■□□□□ 0.52
LIMD1-203ENST00000465039 TOGARAM1Q9Y4F4 1720 aa18.28■□□□□ 0.52
LIMD1-203ENST00000465039 AKAP4Q5JQC9 854 aa18.27■□□□□ 0.52
LIMD1-203ENST00000465039 RREB1Q92766 1687 aa18.27■□□□□ 0.52
LIMD1-203ENST00000465039 APBA3O96018 575 aa18.26■□□□□ 0.51
LIMD1-203ENST00000465039 HMGB2P26583 209 aaKnown RBP18.26■□□□□ 0.51
LIMD1-203ENST00000465039 MRC1P22897 1456 aa18.26■□□□□ 0.51
LIMD1-203ENST00000465039 ERVV-2B6SEH9 535 aa18.25■□□□□ 0.51
LIMD1-203ENST00000465039 PRKAR2BP31323 418 aa18.25■□□□□ 0.51
LIMD1-203ENST00000465039 SCN11AQ9UI33 1791 aa18.25■□□□□ 0.51
LIMD1-203ENST00000465039 ITGB4P16144 1822 aa18.24■□□□□ 0.51
LIMD1-203ENST00000465039 NEFMP07197 916 aa18.24■□□□□ 0.51
LIMD1-203ENST00000465039 CAMKK2Q96RR4 588 aa18.24■□□□□ 0.51
LIMD1-203ENST00000465039 KDM6AO15550 1401 aaPredicted RBP18.23■□□□□ 0.51
LIMD1-203ENST00000465039 KAT6BQ8WYB5 2073 aa18.23■□□□□ 0.51
LIMD1-203ENST00000465039 MAP3K5Q99683 1374 aa18.23■□□□□ 0.51
LIMD1-203ENST00000465039 PRIM1P49642 420 aaKnown RBP18.23■□□□□ 0.51
LIMD1-203ENST00000465039 KCNQ2O43526 872 aa18.22■□□□□ 0.51
LIMD1-203ENST00000465039 MTHFSDQ2M296 383 aaKnown RBP18.22■□□□□ 0.51
LIMD1-203ENST00000465039 LY75O60449 1722 aa18.21■□□□□ 0.51
LIMD1-203ENST00000465039 WDR43Q15061 677 aaKnown RBP eCLIP18.21■□□□□ 0.51
LIMD1-203ENST00000465039 DEFB132Q7Z7B7 95 aa18.21■□□□□ 0.51
LIMD1-203ENST00000465039 ACSBG1Q96GR2 724 aa18.21■□□□□ 0.51
LIMD1-203ENST00000465039 NUP188Q5SRE5 1749 aa18.2■□□□□ 0.5
LIMD1-203ENST00000465039 HTATSF1O43719 755 aaKnown RBP18.2■□□□□ 0.5
LIMD1-203ENST00000465039 EN1Q05925 392 aaPredicted RBP18.2■□□□□ 0.5
LIMD1-203ENST00000465039 SMARCC1Q92922 1105 aaPredicted RBP18.2■□□□□ 0.5
LIMD1-203ENST00000465039 PLEKHF1Q96S99 279 aa18.2■□□□□ 0.5
LIMD1-203ENST00000465039 TMOD3Q9NYL9 352 aa18.2■□□□□ 0.5
LIMD1-203ENST00000465039 ZNF831Q5JPB2 1677 aa18.19■□□□□ 0.5
LIMD1-203ENST00000465039 GNAT3A8MTJ3 354 aa18.19■□□□□ 0.5
LIMD1-203ENST00000465039 SLC27A3Q5K4L6 730 aa18.19■□□□□ 0.5
LIMD1-203ENST00000465039 SYTL4Q96C24 671 aaPredicted RBP18.19■□□□□ 0.5
LIMD1-203ENST00000465039 MAPK8IP3Q9UPT6 1336 aa18.19■□□□□ 0.5
LIMD1-203ENST00000465039 CEMIPQ8WUJ3 1361 aa18.18■□□□□ 0.5
LIMD1-203ENST00000465039 PTF1AQ7RTS3 328 aa18.18■□□□□ 0.5
LIMD1-203ENST00000465039 PHACTR3Q96KR7 559 aa18.18■□□□□ 0.5
LIMD1-203ENST00000465039 VIRMAQ69YN4 1812 aaKnown RBP18.18■□□□□ 0.5
LIMD1-203ENST00000465039 EZH2Q15910 746 aaKnown RBP18.16■□□□□ 0.5
LIMD1-203ENST00000465039 MPRIPQ6WCQ1 1025 aa18.16■□□□□ 0.5
LIMD1-203ENST00000465039 PIGBQ92521 554 aa18.16■□□□□ 0.5
LIMD1-203ENST00000465039 PAPPAQ13219 1627 aa18.16■□□□□ 0.5
LIMD1-203ENST00000465039 PALLDQ8WX93 1383 aa18.16■□□□□ 0.5
LIMD1-203ENST00000465039 CICQ96RK0 1608 aaPredicted RBP18.16■□□□□ 0.5
LIMD1-203ENST00000465039 CABP4P57796 275 aa18.15■□□□□ 0.5
LIMD1-203ENST00000465039 TXNRD1Q16881 649 aa18.15■□□□□ 0.5
LIMD1-203ENST00000465039 RNMTO43148 476 aaKnown RBP18.14■□□□□ 0.49
LIMD1-203ENST00000465039 NFE2L2Q16236 605 aa18.14■□□□□ 0.49
LIMD1-203ENST00000465039 SLC52A2Q9HAB3 445 aa18.14■□□□□ 0.49
LIMD1-203ENST00000465039 SIPA1L3O60292 1781 aaPredicted RBP18.14■□□□□ 0.49
LIMD1-203ENST00000465039 RTF1Q92541 710 aaKnown RBP18.13■□□□□ 0.49
LIMD1-203ENST00000465039 RUNDC1Q96C34 613 aa18.13■□□□□ 0.49
LIMD1-203ENST00000465039 MRS2Q9HD23 443 aa18.13■□□□□ 0.49
LIMD1-203ENST00000465039 LMOD3Q0VAK6 560 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms