RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 NCKAP5LQ9HCH0 1330 aa12.69□□□□□ -0.38
PTPRE-205ENST00000463727 RICTORQ6R327 1708 aa12.69□□□□□ -0.38
PTPRE-205ENST00000463727 SLC26A8Q96RN1 970 aa12.69□□□□□ -0.38
PTPRE-205ENST00000463727 TSPOAP1O95153 1857 aa12.68□□□□□ -0.38
PTPRE-205ENST00000463727 RRAGDQ9NQL2 400 aaPredicted RBP12.68□□□□□ -0.38
PTPRE-205ENST00000463727 SURF6O75683 361 aaKnown RBP12.68□□□□□ -0.38
PTPRE-205ENST00000463727 MBD3O95983 291 aa12.68□□□□□ -0.38
PTPRE-205ENST00000463727 HSP90AB2PQ58FF8 381 aa12.68□□□□□ -0.38
PTPRE-205ENST00000463727 ABCC3O15438 1527 aa12.68□□□□□ -0.38
PTPRE-205ENST00000463727 EIF4A2Q14240 407 aaKnown RBP12.68□□□□□ -0.38
PTPRE-205ENST00000463727 KLHL40Q2TBA0 621 aa12.68□□□□□ -0.38
PTPRE-205ENST00000463727 GPATCH3Q96I76 525 aa12.68□□□□□ -0.38
PTPRE-205ENST00000463727 HDAC5Q9UQL6 1122 aa12.68□□□□□ -0.38
PTPRE-205ENST00000463727 RIMS2Q9UQ26 1411 aa12.68□□□□□ -0.38
PTPRE-205ENST00000463727 QRICH2Q9H0J4 1663 aa12.67□□□□□ -0.38
PTPRE-205ENST00000463727 GOLGA6L4A6NEF3 574 aa12.67□□□□□ -0.38
PTPRE-205ENST00000463727 TEFQ10587 303 aa12.67□□□□□ -0.38
PTPRE-205ENST00000463727 MROH2AA6NES4 1674 aa12.67□□□□□ -0.38
PTPRE-205ENST00000463727 GLI2P10070 1586 aa12.67□□□□□ -0.38
PTPRE-205ENST00000463727 CLCN1P35523 988 aa12.67□□□□□ -0.38
PTPRE-205ENST00000463727 BRPF1P55201 1214 aaPredicted RBP12.67□□□□□ -0.38
PTPRE-205ENST00000463727 KIAA2012Q0VF49 1180 aa12.67□□□□□ -0.38
PTPRE-205ENST00000463727 IQSEC2Q5JU85 1478 aa12.67□□□□□ -0.38
PTPRE-205ENST00000463727 NRXN1Q9ULB1 1477 aa12.67□□□□□ -0.38
PTPRE-205ENST00000463727 RNF214Q8ND24 703 aa12.67□□□□□ -0.38
PTPRE-205ENST00000463727 ABCC4O15439 1325 aa12.66□□□□□ -0.38
PTPRE-205ENST00000463727 ACEP12821 1306 aa12.66□□□□□ -0.38
PTPRE-205ENST00000463727 DIP2BQ9P265 1576 aa12.66□□□□□ -0.38
PTPRE-205ENST00000463727 CEP85Q6P2H3 762 aa12.66□□□□□ -0.38
PTPRE-205ENST00000463727 DIAPH3Q9NSV4 1193 aa12.66□□□□□ -0.38
PTPRE-205ENST00000463727 EDC4Q6P2E9 1401 aaKnown RBP12.66□□□□□ -0.38
PTPRE-205ENST00000463727 HDGFL1Q5TGJ6 251 aa12.66□□□□□ -0.38
PTPRE-205ENST00000463727 TTC21BQ7Z4L5 1316 aa12.65□□□□□ -0.38
PTPRE-205ENST00000463727 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.65□□□□□ -0.38
PTPRE-205ENST00000463727 SRCIN1Q9C0H9 1055 aa12.65□□□□□ -0.38
PTPRE-205ENST00000463727 ATP6V1DQ9Y5K8 247 aa12.65□□□□□ -0.38
PTPRE-205ENST00000463727 MX1P20591 662 aa12.65□□□□□ -0.39
PTPRE-205ENST00000463727 FGD1P98174 961 aa12.65□□□□□ -0.39
PTPRE-205ENST00000463727 RUFY2Q8WXA3 655 aa12.64□□□□□ -0.39
PTPRE-205ENST00000463727 USP26Q9BXU7 913 aa12.64□□□□□ -0.39
PTPRE-205ENST00000463727 IL1RAPL2Q9NP60 686 aa12.64□□□□□ -0.39
PTPRE-205ENST00000463727 TULP4Q9NRJ4 1543 aa12.64□□□□□ -0.39
PTPRE-205ENST00000463727 CSPP1Q1MSJ5 1256 aa12.64□□□□□ -0.39
PTPRE-205ENST00000463727 C9orf78Q9NZ63 289 aaPredicted RBP12.64□□□□□ -0.39
PTPRE-205ENST00000463727 NEURL4Q96JN8 1562 aa12.64□□□□□ -0.39
PTPRE-205ENST00000463727 MYOM1P52179 1685 aa12.64□□□□□ -0.39
PTPRE-205ENST00000463727 FSD2A1L4K1 749 aa12.64□□□□□ -0.39
PTPRE-205ENST00000463727 HSP90AB4PQ58FF6 505 aa12.64□□□□□ -0.39
PTPRE-205ENST00000463727 OTUD7AQ8TE49 926 aaPredicted RBP12.64□□□□□ -0.39
PTPRE-205ENST00000463727 CAMSAP1Q5T5Y3 1602 aa12.63□□□□□ -0.39
PTPRE-205ENST00000463727 ZSCAN30Q86W11 494 aa12.63□□□□□ -0.39
PTPRE-205ENST00000463727 ABTB2Q8N961 1025 aa12.63□□□□□ -0.39
PTPRE-205ENST00000463727 PDE1AP54750 535 aa12.63□□□□□ -0.39
PTPRE-205ENST00000463727 TSHZ3Q63HK5 1081 aa12.63□□□□□ -0.39
PTPRE-205ENST00000463727 UPF3BQ9BZI7 483 aaKnown RBP12.63□□□□□ -0.39
PTPRE-205ENST00000463727 GNAT3A8MTJ3 354 aa12.62□□□□□ -0.39
PTPRE-205ENST00000463727 CHL1O00533 1208 aa12.62□□□□□ -0.39
PTPRE-205ENST00000463727 GSPT1P15170 499 aaKnown RBP12.62□□□□□ -0.39
PTPRE-205ENST00000463727 FLIIQ13045 1269 aa12.62□□□□□ -0.39
PTPRE-205ENST00000463727 SIRT2Q8IXJ6 389 aa12.62□□□□□ -0.39
PTPRE-205ENST00000463727 SMC3Q9UQE7 1217 aa12.62□□□□□ -0.39
PTPRE-205ENST00000463727 CNTROBQ8N137 903 aa12.62□□□□□ -0.39
PTPRE-205ENST00000463727 ADGRB1O14514 1584 aa12.62□□□□□ -0.39
PTPRE-205ENST00000463727 ARHGAP31Q2M1Z3 1444 aa12.61□□□□□ -0.39
PTPRE-205ENST00000463727 IFIT2P09913 472 aaKnown RBP12.61□□□□□ -0.39
PTPRE-205ENST00000463727 ZNF853P0CG23 659 aa12.61□□□□□ -0.39
PTPRE-205ENST00000463727 ZKSCAN1P17029 563 aaPredicted RBP12.61□□□□□ -0.39
PTPRE-205ENST00000463727 SIGLEC1Q9BZZ2 1709 aa12.61□□□□□ -0.39
PTPRE-205ENST00000463727 PNPLA6Q8IY17 1366 aa12.61□□□□□ -0.39
PTPRE-205ENST00000463727 IFT172Q9UG01 1749 aa12.61□□□□□ -0.39
PTPRE-205ENST00000463727 SYCE3A1L190 88 aa12.61□□□□□ -0.39
PTPRE-205ENST00000463727 CD2BP2O95400 341 aaKnown RBP12.61□□□□□ -0.39
PTPRE-205ENST00000463727 CLASRPQ8N2M8 674 aaKnown RBP12.61□□□□□ -0.39
PTPRE-205ENST00000463727 FAM135BQ49AJ0 1406 aa12.61□□□□□ -0.39
PTPRE-205ENST00000463727 C1orf141Q5JVX7 400 aa12.6□□□□□ -0.39
PTPRE-205ENST00000463727 LRRFIP2Q9Y608 721 aaKnown RBP12.6□□□□□ -0.39
PTPRE-205ENST00000463727 SRGAP3O43295 1099 aa12.6□□□□□ -0.39
PTPRE-205ENST00000463727 MAP4K4O95819 1239 aaPredicted RBP12.6□□□□□ -0.39
PTPRE-205ENST00000463727 R3HCC1Q9Y3T6 440 aaKnown RBP12.6□□□□□ -0.39
PTPRE-205ENST00000463727 TPM2P07951 284 aa12.6□□□□□ -0.39
PTPRE-205ENST00000463727 ZGPATQ8N5A5 531 aaKnown RBP12.6□□□□□ -0.39
PTPRE-205ENST00000463727 WDR33Q9C0J8 1336 aaKnown RBP12.6□□□□□ -0.39
PTPRE-205ENST00000463727 MSH6P52701 1360 aa12.6□□□□□ -0.39
PTPRE-205ENST00000463727 FOXO3O43524 673 aa12.59□□□□□ -0.39
PTPRE-205ENST00000463727 ZSCAN23Q3MJ62 389 aa12.59□□□□□ -0.39
PTPRE-205ENST00000463727 NUTM1Q86Y26 1132 aa12.59□□□□□ -0.39
PTPRE-205ENST00000463727 TSPY26PQ9H489 355 aa12.59□□□□□ -0.39
PTPRE-205ENST00000463727 CCDC39Q9UFE4 941 aa12.59□□□□□ -0.39
PTPRE-205ENST00000463727 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.59□□□□□ -0.39
PTPRE-205ENST00000463727 MTHFSDQ2M296 383 aaKnown RBP12.59□□□□□ -0.39
PTPRE-205ENST00000463727 AEBP2Q6ZN18 517 aaPredicted RBP12.59□□□□□ -0.39
PTPRE-205ENST00000463727 TMX3Q96JJ7 454 aa12.59□□□□□ -0.39
PTPRE-205ENST00000463727 KIF24Q5T7B8 1368 aa12.59□□□□□ -0.39
PTPRE-205ENST00000463727 CHAF1AQ13111 956 aaPredicted RBP12.59□□□□□ -0.39
PTPRE-205ENST00000463727 TAF7Q15545 349 aaPredicted RBP12.59□□□□□ -0.39
PTPRE-205ENST00000463727 VPS37CA5D8V6 355 aaPredicted RBP12.58□□□□□ -0.4
PTPRE-205ENST00000463727 G2E3Q7L622 706 aa12.58□□□□□ -0.4
PTPRE-205ENST00000463727 RBM27Q9P2N5 1060 aaKnown RBP12.58□□□□□ -0.4
PTPRE-205ENST00000463727 NAP1L2Q9ULW6 460 aaPredicted RBP12.58□□□□□ -0.4
PTPRE-205ENST00000463727 AMOTL2Q9Y2J4 779 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms