RNA–Protein interactions for RNA: ENST00000463440.1

COL1A1-202, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 614 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-202ENST00000463440 RGPD4Q7Z3J3 1758 aa22.17■■□□□ 1.14
COL1A1-202ENST00000463440 KCNQ2O43526 872 aa22.17■■□□□ 1.14
COL1A1-202ENST00000463440 NBPF14Q5TI25 921 aa22.17■■□□□ 1.14
COL1A1-202ENST00000463440 NHSQ6T4R5 1651 aa22.17■■□□□ 1.14
COL1A1-202ENST00000463440 AMER1Q5JTC6 1135 aaPredicted RBP22.16■■□□□ 1.14
COL1A1-202ENST00000463440 R3HDM1Q15032 1099 aaKnown RBP22.15■■□□□ 1.14
COL1A1-202ENST00000463440 KAT6BQ8WYB5 2073 aa22.15■■□□□ 1.14
COL1A1-202ENST00000463440 NUP188Q5SRE5 1749 aa22.14■■□□□ 1.14
COL1A1-202ENST00000463440 EYA1Q99502 592 aa22.14■■□□□ 1.13
COL1A1-202ENST00000463440 PER1O15534 1290 aaPredicted RBP22.13■■□□□ 1.13
COL1A1-202ENST00000463440 EIF4A2Q14240 407 aaKnown RBP22.13■■□□□ 1.13
COL1A1-202ENST00000463440 NCAPD2Q15021 1401 aa22.13■■□□□ 1.13
COL1A1-202ENST00000463440 SHANK3Q9BYB0 1731 aa22.11■■□□□ 1.13
COL1A1-202ENST00000463440 PCDH11XQ9BZA7 1347 aa22.11■■□□□ 1.13
COL1A1-202ENST00000463440 PCDH11YQ9BZA8 1340 aa22.11■■□□□ 1.13
COL1A1-202ENST00000463440 TXNRD1Q16881 649 aa22.09■■□□□ 1.13
COL1A1-202ENST00000463440 PROM2Q8N271 834 aa22.09■■□□□ 1.13
COL1A1-202ENST00000463440 CC2D1BQ5T0F9 858 aaKnown RBP22.08■■□□□ 1.13
COL1A1-202ENST00000463440 SYTL4Q96C24 671 aaPredicted RBP22.08■■□□□ 1.13
COL1A1-202ENST00000463440 BTAF1O14981 1849 aa22.08■■□□□ 1.12
COL1A1-202ENST00000463440 PRIM1P49642 420 aaKnown RBP22.07■■□□□ 1.12
COL1A1-202ENST00000463440 SPG7Q9UQ90 795 aa22.07■■□□□ 1.12
COL1A1-202ENST00000463440 NPC1L1Q9UHC9 1359 aa22.06■■□□□ 1.12
COL1A1-202ENST00000463440 DOT1LQ8TEK3 1739 aa22.06■■□□□ 1.12
COL1A1-202ENST00000463440 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.05■■□□□ 1.12
COL1A1-202ENST00000463440 PKD1L3Q7Z443 1732 aa22.05■■□□□ 1.12
COL1A1-202ENST00000463440 IGSF1Q8N6C5 1336 aa22.05■■□□□ 1.12
COL1A1-202ENST00000463440 CYP27B1O15528 508 aa22.04■■□□□ 1.12
COL1A1-202ENST00000463440 PLEKHG2Q9H7P9 1386 aa22.02■■□□□ 1.12
COL1A1-202ENST00000463440 MTHFSP49914 203 aa22.02■■□□□ 1.12
COL1A1-202ENST00000463440 ANO8Q9HCE9 1232 aaPredicted RBP22.02■■□□□ 1.12
COL1A1-202ENST00000463440 STK32BQ9NY57 414 aa22.02■■□□□ 1.12
COL1A1-202ENST00000463440 LRP5O75197 1615 aa22.02■■□□□ 1.11
COL1A1-202ENST00000463440 CNGB1Q14028 1251 aaPredicted RBP22.01■■□□□ 1.11
COL1A1-202ENST00000463440 IL13P35225 146 aa21.99■■□□□ 1.11
COL1A1-202ENST00000463440 SLC27A3Q5K4L6 730 aa21.99■■□□□ 1.11
COL1A1-202ENST00000463440 SRCAPQ6ZRS2 3230 aa21.99■■□□□ 1.11
COL1A1-202ENST00000463440 NKX1-1Q15270 411 aaPredicted RBP21.98■■□□□ 1.11
COL1A1-202ENST00000463440 IFNL2Q8IZJ0 200 aa21.98■■□□□ 1.11
COL1A1-202ENST00000463440 SLC15A2Q16348 729 aa21.97■■□□□ 1.11
COL1A1-202ENST00000463440 PHKG2P15735 406 aa21.96■■□□□ 1.11
COL1A1-202ENST00000463440 PLEKHO1Q53GL0 409 aaPredicted RBP21.96■■□□□ 1.11
COL1A1-202ENST00000463440 SULT6B1Q6IMI4 303 aa21.96■■□□□ 1.11
COL1A1-202ENST00000463440 AMOTQ4VCS5 1084 aa21.95■■□□□ 1.1
COL1A1-202ENST00000463440 MPRIPQ6WCQ1 1025 aa21.95■■□□□ 1.1
COL1A1-202ENST00000463440 AEBP1Q8IUX7 1158 aa21.95■■□□□ 1.1
COL1A1-202ENST00000463440 LRRC4BQ9NT99 713 aa21.95■■□□□ 1.1
COL1A1-202ENST00000463440 DIAPH1O60610 1272 aaKnown RBP21.93■■□□□ 1.1
COL1A1-202ENST00000463440 LY75O60449 1722 aa21.92■■□□□ 1.1
COL1A1-202ENST00000463440 TOGARAM1Q9Y4F4 1720 aa21.92■■□□□ 1.1
COL1A1-202ENST00000463440 PAPPAQ13219 1627 aa21.92■■□□□ 1.1
COL1A1-202ENST00000463440 KDRP35968 1356 aa21.92■■□□□ 1.1
COL1A1-202ENST00000463440 HSP90AB1P08238 724 aaKnown RBP21.92■■□□□ 1.1
COL1A1-202ENST00000463440 SPON1Q9HCB6 807 aa21.92■■□□□ 1.1
COL1A1-202ENST00000463440 CCNL1Q9UK58 526 aaPredicted RBP21.92■■□□□ 1.1
COL1A1-202ENST00000463440 ZNF530Q6P9A1 599 aaPredicted RBP21.91■■□□□ 1.1
COL1A1-202ENST00000463440 SMARCC1Q92922 1105 aaPredicted RBP21.91■■□□□ 1.1
COL1A1-202ENST00000463440 ITGB4P16144 1822 aa21.91■■□□□ 1.1
COL1A1-202ENST00000463440 HMGB2P26583 209 aaKnown RBP21.9■■□□□ 1.1
COL1A1-202ENST00000463440 PIGBQ92521 554 aa21.9■■□□□ 1.1
COL1A1-202ENST00000463440 TMOD3Q9NYL9 352 aa21.9■■□□□ 1.1
COL1A1-202ENST00000463440 PALLDQ8WX93 1383 aa21.89■■□□□ 1.1
COL1A1-202ENST00000463440 KCNQ4P56696 695 aa21.89■■□□□ 1.09
COL1A1-202ENST00000463440 C1orf141Q5JVX7 400 aa21.89■■□□□ 1.09
COL1A1-202ENST00000463440 CASZ1Q86V15 1759 aa21.89■■□□□ 1.09
COL1A1-202ENST00000463440 ZNF827Q17R98 1081 aa21.88■■□□□ 1.09
COL1A1-202ENST00000463440 AKT1S1Q96B36 256 aa21.88■■□□□ 1.09
COL1A1-202ENST00000463440 DCAF5Q96JK2 942 aa21.88■■□□□ 1.09
COL1A1-202ENST00000463440 PDGFDQ9GZP0 370 aaPredicted RBP21.88■■□□□ 1.09
COL1A1-202ENST00000463440 CFAP53Q96M91 514 aa21.87■■□□□ 1.09
COL1A1-202ENST00000463440 ERVV-2B6SEH9 535 aa21.86■■□□□ 1.09
COL1A1-202ENST00000463440 HMOX1P09601 288 aa21.86■■□□□ 1.09
COL1A1-202ENST00000463440 COL3A1P02461 1466 aaPredicted RBP21.85■■□□□ 1.09
COL1A1-202ENST00000463440 ZBTB7AO95365 584 aa21.85■■□□□ 1.09
COL1A1-202ENST00000463440 TFCP2L1Q9NZI6 479 aa21.85■■□□□ 1.09
COL1A1-202ENST00000463440 U2SURPO15042 1029 aaKnown RBP21.84■■□□□ 1.09
COL1A1-202ENST00000463440 PPP1R1BQ9UD71 204 aaPredicted RBP21.84■■□□□ 1.09
COL1A1-202ENST00000463440 PPP2R1AP30153 589 aa21.83■■□□□ 1.09
COL1A1-202ENST00000463440 MTFR1LQ9H019 292 aa21.82■■□□□ 1.08
COL1A1-202ENST00000463440 KDM6AO15550 1401 aaPredicted RBP21.81■■□□□ 1.08
COL1A1-202ENST00000463440 CABP4P57796 275 aa21.81■■□□□ 1.08
COL1A1-202ENST00000463440 AKAP4Q5JQC9 854 aa21.81■■□□□ 1.08
COL1A1-202ENST00000463440 ASAP1Q9ULH1 1129 aa21.81■■□□□ 1.08
COL1A1-202ENST00000463440 ATF5Q9Y2D1 282 aaPredicted RBP21.81■■□□□ 1.08
COL1A1-202ENST00000463440 QSER1Q2KHR3 1735 aa21.8■■□□□ 1.08
COL1A1-202ENST00000463440 NUDCQ9Y266 331 aa21.8■■□□□ 1.08
COL1A1-202ENST00000463440 C5P01031 1676 aa21.79■■□□□ 1.08
COL1A1-202ENST00000463440 LOC102724428A0A0B4J2F2 783 aa21.79■■□□□ 1.08
COL1A1-202ENST00000463440 ZEB1P37275 1124 aaPredicted RBP21.79■■□□□ 1.08
COL1A1-202ENST00000463440 SIK1P57059 783 aa21.79■■□□□ 1.08
COL1A1-202ENST00000463440 SLC16A10Q8TF71 515 aa21.79■■□□□ 1.08
COL1A1-202ENST00000463440 ATG3Q9NT62 314 aa21.79■■□□□ 1.08
COL1A1-202ENST00000463440 PNPLA7Q6ZV29 1317 aa21.79■■□□□ 1.08
COL1A1-202ENST00000463440 TAF1LQ8IZX4 1826 aa21.77■■□□□ 1.08
COL1A1-202ENST00000463440 TUBGCP6Q96RT7 1819 aa21.76■■□□□ 1.07
COL1A1-202ENST00000463440 PTGER2P43116 358 aa21.76■■□□□ 1.07
COL1A1-202ENST00000463440 MTHFSDQ2M296 383 aaKnown RBP21.76■■□□□ 1.07
COL1A1-202ENST00000463440 ATP6V1AP38606 617 aa21.75■■□□□ 1.07
COL1A1-202ENST00000463440 NFATC2IPQ8NCF5 419 aa21.75■■□□□ 1.07
COL1A1-202ENST00000463440 AK7Q96M32 723 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms