RNA–Protein interactions for RNA: ENST00000463315.1

SEMA3D-203, Transcript of semaphorin 3D, humanhuman

TSL 2

Gene SEMA3D, Length 1,257 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3D-203ENST00000463315 LRRC37A3O60309 1634 aa18.6■□□□□ 0.57
SEMA3D-203ENST00000463315 DSG3P32926 999 aa18.6■□□□□ 0.57
SEMA3D-203ENST00000463315 TNS2Q63HR2 1409 aa18.59■□□□□ 0.57
SEMA3D-203ENST00000463315 OVOS2A0A0G2JMS6 1433 aa18.58■□□□□ 0.57
SEMA3D-203ENST00000463315 MTHFSP49914 203 aa18.57■□□□□ 0.56
SEMA3D-203ENST00000463315 EIF4A2Q14240 407 aaKnown RBP18.57■□□□□ 0.56
SEMA3D-203ENST00000463315 RAPGEF4Q8WZA2 1011 aa18.56■□□□□ 0.56
SEMA3D-203ENST00000463315 EYA1Q99502 592 aa18.55■□□□□ 0.56
SEMA3D-203ENST00000463315 IGSF1Q8N6C5 1336 aa18.54■□□□□ 0.56
SEMA3D-203ENST00000463315 TATP17735 454 aaPredicted RBP18.54■□□□□ 0.56
SEMA3D-203ENST00000463315 SF3B2Q13435 895 aaKnown RBP18.54■□□□□ 0.56
SEMA3D-203ENST00000463315 MARCH10Q8NA82 808 aaPredicted RBP18.54■□□□□ 0.56
SEMA3D-203ENST00000463315 RGPD2P0DJD1 1756 aa18.53■□□□□ 0.56
SEMA3D-203ENST00000463315 DDX10Q13206 875 aaKnown RBP18.53■□□□□ 0.56
SEMA3D-203ENST00000463315 ZCRB1Q8TBF4 217 aaKnown RBP18.53■□□□□ 0.56
SEMA3D-203ENST00000463315 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.53■□□□□ 0.56
SEMA3D-203ENST00000463315 IL13P35225 146 aa18.52■□□□□ 0.56
SEMA3D-203ENST00000463315 FAM182BQ5T319 152 aa18.52■□□□□ 0.56
SEMA3D-203ENST00000463315 ZNF219Q9P2Y4 722 aaPredicted RBP18.52■□□□□ 0.56
SEMA3D-203ENST00000463315 MEGF6O75095 1541 aa18.51■□□□□ 0.55
SEMA3D-203ENST00000463315 PARD3Q8TEW0 1356 aa18.51■□□□□ 0.55
SEMA3D-203ENST00000463315 RGPD1P0DJD0 1748 aa18.51■□□□□ 0.55
SEMA3D-203ENST00000463315 ZNF316A6NFI3 1004 aaPredicted RBP18.5■□□□□ 0.55
SEMA3D-203ENST00000463315 USHBP1Q8N6Y0 703 aa18.5■□□□□ 0.55
SEMA3D-203ENST00000463315 RALBP1Q15311 655 aa18.49■□□□□ 0.55
SEMA3D-203ENST00000463315 CFAP53Q96M91 514 aa18.49■□□□□ 0.55
SEMA3D-203ENST00000463315 KDRP35968 1356 aa18.49■□□□□ 0.55
SEMA3D-203ENST00000463315 DIAPH1O60610 1272 aaKnown RBP18.48■□□□□ 0.55
SEMA3D-203ENST00000463315 TRIM37O94972 964 aa18.48■□□□□ 0.55
SEMA3D-203ENST00000463315 PPP2R1AP30153 589 aa18.48■□□□□ 0.55
SEMA3D-203ENST00000463315 BAG6P46379 1132 aa18.48■□□□□ 0.55
SEMA3D-203ENST00000463315 BCL11BQ9C0K0 894 aaPredicted RBP18.48■□□□□ 0.55
SEMA3D-203ENST00000463315 SPG7Q9UQ90 795 aa18.48■□□□□ 0.55
SEMA3D-203ENST00000463315 PCDH11XQ9BZA7 1347 aa18.48■□□□□ 0.55
SEMA3D-203ENST00000463315 PCDH11YQ9BZA8 1340 aa18.48■□□□□ 0.55
SEMA3D-203ENST00000463315 ABCB7O75027 752 aa18.46■□□□□ 0.55
SEMA3D-203ENST00000463315 COL3A1P02461 1466 aaPredicted RBP18.46■□□□□ 0.54
SEMA3D-203ENST00000463315 DDX54Q8TDD1 881 aaKnown RBP18.45■□□□□ 0.54
SEMA3D-203ENST00000463315 PKD1L3Q7Z443 1732 aa18.45■□□□□ 0.54
SEMA3D-203ENST00000463315 TNS1Q9HBL0 1735 aaKnown RBP18.45■□□□□ 0.54
SEMA3D-203ENST00000463315 CNGB1Q14028 1251 aaPredicted RBP18.44■□□□□ 0.54
SEMA3D-203ENST00000463315 AMOTQ4VCS5 1084 aa18.44■□□□□ 0.54
SEMA3D-203ENST00000463315 SBF2Q86WG5 1849 aa18.44■□□□□ 0.54
SEMA3D-203ENST00000463315 PLSCR1O15162 318 aa18.43■□□□□ 0.54
SEMA3D-203ENST00000463315 APBA3O96018 575 aa18.43■□□□□ 0.54
SEMA3D-203ENST00000463315 NKX1-1Q15270 411 aaPredicted RBP18.43■□□□□ 0.54
SEMA3D-203ENST00000463315 SULT6B1Q6IMI4 303 aa18.43■□□□□ 0.54
SEMA3D-203ENST00000463315 SHANK3Q9BYB0 1731 aa18.43■□□□□ 0.54
SEMA3D-203ENST00000463315 PLEKHO1Q53GL0 409 aaPredicted RBP18.42■□□□□ 0.54
SEMA3D-203ENST00000463315 NUDCQ9Y266 331 aa18.42■□□□□ 0.54
SEMA3D-203ENST00000463315 CYP27B1O15528 508 aa18.41■□□□□ 0.54
SEMA3D-203ENST00000463315 NHSQ6T4R5 1651 aa18.41■□□□□ 0.54
SEMA3D-203ENST00000463315 DEFB132Q7Z7B7 95 aa18.4■□□□□ 0.54
SEMA3D-203ENST00000463315 IFNL2Q8IZJ0 200 aa18.4■□□□□ 0.54
SEMA3D-203ENST00000463315 CAMKK2Q96RR4 588 aa18.4■□□□□ 0.54
SEMA3D-203ENST00000463315 RGPD3A6NKT7 1758 aaPredicted RBP18.4■□□□□ 0.54
SEMA3D-203ENST00000463315 RGPD4Q7Z3J3 1758 aa18.4■□□□□ 0.54
SEMA3D-203ENST00000463315 AEBP1Q8IUX7 1158 aa18.39■□□□□ 0.53
SEMA3D-203ENST00000463315 HSP90AB1P08238 724 aaKnown RBP18.38■□□□□ 0.53
SEMA3D-203ENST00000463315 PHKG2P15735 406 aa18.37■□□□□ 0.53
SEMA3D-203ENST00000463315 EN1Q05925 392 aaPredicted RBP18.37■□□□□ 0.53
SEMA3D-203ENST00000463315 MYBBP1AQ9BQG0 1328 aaKnown RBP18.37■□□□□ 0.53
SEMA3D-203ENST00000463315 KCNQ2O43526 872 aa18.36■□□□□ 0.53
SEMA3D-203ENST00000463315 PRKRIP1Q9H875 184 aaPredicted RBP18.36■□□□□ 0.53
SEMA3D-203ENST00000463315 U2SURPO15042 1029 aaKnown RBP18.35■□□□□ 0.53
SEMA3D-203ENST00000463315 FCHSD2O94868 740 aa18.35■□□□□ 0.53
SEMA3D-203ENST00000463315 PRIM1P49642 420 aaKnown RBP18.35■□□□□ 0.53
SEMA3D-203ENST00000463315 ACSBG1Q96GR2 724 aa18.35■□□□□ 0.53
SEMA3D-203ENST00000463315 ATF5Q9Y2D1 282 aaPredicted RBP18.35■□□□□ 0.53
SEMA3D-203ENST00000463315 HMOX1P09601 288 aa18.34■□□□□ 0.53
SEMA3D-203ENST00000463315 PTF1AQ7RTS3 328 aa18.34■□□□□ 0.53
SEMA3D-203ENST00000463315 DCAF5Q96JK2 942 aa18.34■□□□□ 0.53
SEMA3D-203ENST00000463315 HMGB2P26583 209 aaKnown RBP18.33■□□□□ 0.52
SEMA3D-203ENST00000463315 EZH2Q15910 746 aaKnown RBP18.33■□□□□ 0.52
SEMA3D-203ENST00000463315 C1orf141Q5JVX7 400 aa18.33■□□□□ 0.52
SEMA3D-203ENST00000463315 ZNF530Q6P9A1 599 aaPredicted RBP18.33■□□□□ 0.52
SEMA3D-203ENST00000463315 DOT1LQ8TEK3 1739 aa18.32■□□□□ 0.52
SEMA3D-203ENST00000463315 ERVV-2B6SEH9 535 aa18.32■□□□□ 0.52
SEMA3D-203ENST00000463315 U2AF1L5P0DN76 240 aaPredicted RBP18.31■□□□□ 0.52
SEMA3D-203ENST00000463315 U2AF1Q01081 240 aaKnown RBP eCLIP18.31■□□□□ 0.52
SEMA3D-203ENST00000463315 AKAP4Q5JQC9 854 aa18.31■□□□□ 0.52
SEMA3D-203ENST00000463315 SYTL4Q96C24 671 aaPredicted RBP18.31■□□□□ 0.52
SEMA3D-203ENST00000463315 RSPH6AQ9H0K4 717 aa18.31■□□□□ 0.52
SEMA3D-203ENST00000463315 RREB1Q92766 1687 aa18.31■□□□□ 0.52
SEMA3D-203ENST00000463315 PNNQ9H307 717 aaKnown RBP18.3■□□□□ 0.52
SEMA3D-203ENST00000463315 BTAF1O14981 1849 aa18.3■□□□□ 0.52
SEMA3D-203ENST00000463315 SLC27A3Q5K4L6 730 aa18.29■□□□□ 0.52
SEMA3D-203ENST00000463315 GAS2L2Q8NHY3 880 aa18.29■□□□□ 0.52
SEMA3D-203ENST00000463315 TXNRD1Q16881 649 aa18.28■□□□□ 0.52
SEMA3D-203ENST00000463315 PROM2Q8N271 834 aa18.28■□□□□ 0.52
SEMA3D-203ENST00000463315 SMARCC1Q92922 1105 aaPredicted RBP18.28■□□□□ 0.52
SEMA3D-203ENST00000463315 PRKAR2BP31323 418 aa18.27■□□□□ 0.52
SEMA3D-203ENST00000463315 MTHFSDQ2M296 383 aaKnown RBP18.27■□□□□ 0.52
SEMA3D-203ENST00000463315 NBPF14Q5TI25 921 aa18.27■□□□□ 0.52
SEMA3D-203ENST00000463315 TMOD3Q9NYL9 352 aa18.27■□□□□ 0.52
SEMA3D-203ENST00000463315 KAT6BQ8WYB5 2073 aa18.27■□□□□ 0.51
SEMA3D-203ENST00000463315 TOGARAM1Q9Y4F4 1720 aa18.26■□□□□ 0.51
SEMA3D-203ENST00000463315 MPRIPQ6WCQ1 1025 aa18.26■□□□□ 0.51
SEMA3D-203ENST00000463315 PIGBQ92521 554 aa18.26■□□□□ 0.51
SEMA3D-203ENST00000463315 KDM6AO15550 1401 aaPredicted RBP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms