RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 WASHC2AQ641Q2 1341 aa10.03□□□□□ -0.8
PTPRF-210ENST00000463041 PPM1GO15355 546 aaPredicted RBP10.02□□□□□ -0.81
PTPRF-210ENST00000463041 PRIM1P49642 420 aaKnown RBP10.02□□□□□ -0.81
PTPRF-210ENST00000463041 SLC15A2Q16348 729 aa10.02□□□□□ -0.81
PTPRF-210ENST00000463041 POLKQ9UBT6 870 aa10.02□□□□□ -0.81
PTPRF-210ENST00000463041 EMILIN1Q9Y6C2 1016 aa10.02□□□□□ -0.81
PTPRF-210ENST00000463041 NHSQ6T4R5 1651 aa10.02□□□□□ -0.81
PTPRF-210ENST00000463041 SLC27A3Q5K4L6 730 aa10.01□□□□□ -0.81
PTPRF-210ENST00000463041 USHBP1Q8N6Y0 703 aa10.01□□□□□ -0.81
PTPRF-210ENST00000463041 ANO8Q9HCE9 1232 aaPredicted RBP10.01□□□□□ -0.81
PTPRF-210ENST00000463041 BTAF1O14981 1849 aa10□□□□□ -0.81
PTPRF-210ENST00000463041 HMGB2P26583 209 aaKnown RBP10□□□□□ -0.81
PTPRF-210ENST00000463041 SYTL4Q96C24 671 aaPredicted RBP10□□□□□ -0.81
PTPRF-210ENST00000463041 EYA1Q99502 592 aa9.99□□□□□ -0.81
PTPRF-210ENST00000463041 LRRC4BQ9NT99 713 aa9.99□□□□□ -0.81
PTPRF-210ENST00000463041 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.99□□□□□ -0.81
PTPRF-210ENST00000463041 PPP1R1BQ9UD71 204 aaPredicted RBP9.99□□□□□ -0.81
PTPRF-210ENST00000463041 KNSTRNQ9Y448 316 aa9.99□□□□□ -0.81
PTPRF-210ENST00000463041 MEGF6O75095 1541 aa9.98□□□□□ -0.81
PTPRF-210ENST00000463041 TNNT2P45379 298 aaPredicted RBP9.98□□□□□ -0.81
PTPRF-210ENST00000463041 SPG7Q9UQ90 795 aa9.98□□□□□ -0.81
PTPRF-210ENST00000463041 PCDH11XQ9BZA7 1347 aa9.98□□□□□ -0.81
PTPRF-210ENST00000463041 PCDH11YQ9BZA8 1340 aa9.98□□□□□ -0.81
PTPRF-210ENST00000463041 NKX1-1Q15270 411 aaPredicted RBP9.97□□□□□ -0.81
PTPRF-210ENST00000463041 MORC1Q86VD1 984 aa9.97□□□□□ -0.81
PTPRF-210ENST00000463041 PDGFDQ9GZP0 370 aaPredicted RBP9.97□□□□□ -0.81
PTPRF-210ENST00000463041 NSD2O96028 1365 aa9.97□□□□□ -0.81
PTPRF-210ENST00000463041 SHANK3Q9BYB0 1731 aa9.96□□□□□ -0.81
PTPRF-210ENST00000463041 ANKRD26Q9UPS8 1709 aa9.96□□□□□ -0.81
PTPRF-210ENST00000463041 CYP27B1O15528 508 aa9.96□□□□□ -0.82
PTPRF-210ENST00000463041 ZBTB7AO95365 584 aa9.96□□□□□ -0.82
PTPRF-210ENST00000463041 EIF4A2Q14240 407 aaKnown RBP9.96□□□□□ -0.82
PTPRF-210ENST00000463041 SLC16A10Q8TF71 515 aa9.96□□□□□ -0.82
PTPRF-210ENST00000463041 AKT1S1Q96B36 256 aa9.96□□□□□ -0.82
PTPRF-210ENST00000463041 MTFR1LQ9H019 292 aa9.96□□□□□ -0.82
PTPRF-210ENST00000463041 ATF5Q9Y2D1 282 aaPredicted RBP9.96□□□□□ -0.82
PTPRF-210ENST00000463041 DCAF8L1A6NGE4 600 aa9.95□□□□□ -0.82
PTPRF-210ENST00000463041 NCAPD2Q15021 1401 aa9.95□□□□□ -0.82
PTPRF-210ENST00000463041 CASZ1Q86V15 1759 aa9.95□□□□□ -0.82
PTPRF-210ENST00000463041 KIF7Q2M1P5 1343 aa9.94□□□□□ -0.82
PTPRF-210ENST00000463041 PTGER2P43116 358 aa9.94□□□□□ -0.82
PTPRF-210ENST00000463041 MPRIPQ6WCQ1 1025 aa9.94□□□□□ -0.82
PTPRF-210ENST00000463041 IFNL2Q8IZJ0 200 aa9.94□□□□□ -0.82
PTPRF-210ENST00000463041 SMARCC1Q92922 1105 aaPredicted RBP9.94□□□□□ -0.82
PTPRF-210ENST00000463041 TFCP2L1Q9NZI6 479 aa9.94□□□□□ -0.82
PTPRF-210ENST00000463041 CCNL1Q9UK58 526 aaPredicted RBP9.94□□□□□ -0.82
PTPRF-210ENST00000463041 LY75O60449 1722 aa9.93□□□□□ -0.82
PTPRF-210ENST00000463041 DOT1LQ8TEK3 1739 aa9.93□□□□□ -0.82
PTPRF-210ENST00000463041 PLEKHG2Q9H7P9 1386 aa9.93□□□□□ -0.82
PTPRF-210ENST00000463041 PER1O15534 1290 aaPredicted RBP9.93□□□□□ -0.82
PTPRF-210ENST00000463041 KCNQ4P56696 695 aa9.93□□□□□ -0.82
PTPRF-210ENST00000463041 ZNF827Q17R98 1081 aa9.93□□□□□ -0.82
PTPRF-210ENST00000463041 AMER1Q5JTC6 1135 aaPredicted RBP9.93□□□□□ -0.82
PTPRF-210ENST00000463041 ITGB4P16144 1822 aa9.93□□□□□ -0.82
PTPRF-210ENST00000463041 IGSF1Q8N6C5 1336 aa9.92□□□□□ -0.82
PTPRF-210ENST00000463041 PHKG2P15735 406 aa9.92□□□□□ -0.82
PTPRF-210ENST00000463041 AMOTQ4VCS5 1084 aa9.92□□□□□ -0.82
PTPRF-210ENST00000463041 PLEKHO1Q53GL0 409 aaPredicted RBP9.92□□□□□ -0.82
PTPRF-210ENST00000463041 PIGBQ92521 554 aa9.92□□□□□ -0.82
PTPRF-210ENST00000463041 SGIP1Q9BQI5 828 aa9.92□□□□□ -0.82
PTPRF-210ENST00000463041 PAPPAQ13219 1627 aa9.92□□□□□ -0.82
PTPRF-210ENST00000463041 QSER1Q2KHR3 1735 aa9.91□□□□□ -0.82
PTPRF-210ENST00000463041 PKD1L3Q7Z443 1732 aa9.91□□□□□ -0.82
PTPRF-210ENST00000463041 HSP90AB1P08238 724 aaKnown RBP9.91□□□□□ -0.82
PTPRF-210ENST00000463041 FLAD1Q8NFF5 587 aa9.91□□□□□ -0.82
PTPRF-210ENST00000463041 ARXQ96QS3 562 aa9.91□□□□□ -0.82
PTPRF-210ENST00000463041 PNPLA7Q6ZV29 1317 aa9.9□□□□□ -0.82
PTPRF-210ENST00000463041 ERVV-2B6SEH9 535 aa9.9□□□□□ -0.82
PTPRF-210ENST00000463041 IL13P35225 146 aa9.9□□□□□ -0.82
PTPRF-210ENST00000463041 SYT17Q9BSW7 474 aa9.9□□□□□ -0.82
PTPRF-210ENST00000463041 TMOD3Q9NYL9 352 aa9.9□□□□□ -0.82
PTPRF-210ENST00000463041 PALLDQ8WX93 1383 aa9.89□□□□□ -0.83
PTPRF-210ENST00000463041 POLD1P28340 1107 aa9.89□□□□□ -0.83
PTPRF-210ENST00000463041 MTHFSP49914 203 aa9.89□□□□□ -0.83
PTPRF-210ENST00000463041 DCAF5Q96JK2 942 aa9.89□□□□□ -0.83
PTPRF-210ENST00000463041 FHDC1Q9C0D6 1143 aaPredicted RBP9.89□□□□□ -0.83
PTPRF-210ENST00000463041 LOC102724428A0A0B4J2F2 783 aa9.88□□□□□ -0.83
PTPRF-210ENST00000463041 MSH5O43196 834 aa9.88□□□□□ -0.83
PTPRF-210ENST00000463041 SIK1P57059 783 aa9.88□□□□□ -0.83
PTPRF-210ENST00000463041 SULT6B1Q6IMI4 303 aa9.88□□□□□ -0.83
PTPRF-210ENST00000463041 COL23A1Q86Y22 540 aaPredicted RBP9.88□□□□□ -0.83
PTPRF-210ENST00000463041 ASAP1Q9ULH1 1129 aa9.88□□□□□ -0.83
PTPRF-210ENST00000463041 TAF1LQ8IZX4 1826 aa9.88□□□□□ -0.83
PTPRF-210ENST00000463041 CC2D1BQ5T0F9 858 aaKnown RBP9.87□□□□□ -0.83
PTPRF-210ENST00000463041 ZNF530Q6P9A1 599 aaPredicted RBP9.87□□□□□ -0.83
PTPRF-210ENST00000463041 ATG3Q9NT62 314 aa9.87□□□□□ -0.83
PTPRF-210ENST00000463041 NPC1L1Q9UHC9 1359 aa9.87□□□□□ -0.83
PTPRF-210ENST00000463041 ATP6V1AP38606 617 aa9.86□□□□□ -0.83
PTPRF-210ENST00000463041 COL24A1Q17RW2 1714 aa9.86□□□□□ -0.83
PTPRF-210ENST00000463041 C1orf141Q5JVX7 400 aa9.86□□□□□ -0.83
PTPRF-210ENST00000463041 AEBP1Q8IUX7 1158 aa9.86□□□□□ -0.83
PTPRF-210ENST00000463041 AK7Q96M32 723 aa9.86□□□□□ -0.83
PTPRF-210ENST00000463041 TOGARAM1Q9Y4F4 1720 aa9.86□□□□□ -0.83
PTPRF-210ENST00000463041 TUBGCP6Q96RT7 1819 aa9.86□□□□□ -0.83
PTPRF-210ENST00000463041 MAP3K5Q99683 1374 aa9.86□□□□□ -0.83
PTPRF-210ENST00000463041 DIAPH1O60610 1272 aaKnown RBP9.85□□□□□ -0.83
PTPRF-210ENST00000463041 YY1P25490 414 aa9.85□□□□□ -0.83
PTPRF-210ENST00000463041 CABP4P57796 275 aa9.85□□□□□ -0.83
PTPRF-210ENST00000463041 C5P01031 1676 aa9.85□□□□□ -0.83
PTPRF-210ENST00000463041 KDRP35968 1356 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 139.7 ms