RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 CEP170BQ9Y4F5 1589 aaPredicted RBP15.48■□□□□ 0.07
HDAC4-208ENST00000463007 CHAMP1Q96JM3 812 aa15.48■□□□□ 0.07
HDAC4-208ENST00000463007 ZBTB40Q9NUA8 1239 aa15.48■□□□□ 0.07
HDAC4-208ENST00000463007 CHD1LQ86WJ1 897 aa15.47■□□□□ 0.07
HDAC4-208ENST00000463007 DDX49Q9Y6V7 483 aaKnown RBP15.47■□□□□ 0.07
HDAC4-208ENST00000463007 LRRC37A3O60309 1634 aa15.47■□□□□ 0.07
HDAC4-208ENST00000463007 AK9Q5TCS8 1911 aa15.47■□□□□ 0.07
HDAC4-208ENST00000463007 VAMP4O75379 141 aa15.46■□□□□ 0.07
HDAC4-208ENST00000463007 CLCN1P35523 988 aa15.46■□□□□ 0.07
HDAC4-208ENST00000463007 FOXD4L6Q3SYB3 417 aaPredicted RBP15.46■□□□□ 0.07
HDAC4-208ENST00000463007 FOXD4L3Q6VB84 417 aaPredicted RBP15.46■□□□□ 0.07
HDAC4-208ENST00000463007 GBP4Q96PP9 640 aa15.46■□□□□ 0.07
HDAC4-208ENST00000463007 CHD2O14647 1828 aaKnown RBP15.46■□□□□ 0.07
HDAC4-208ENST00000463007 ANKARQ7Z5J8 1434 aa15.45■□□□□ 0.06
HDAC4-208ENST00000463007 EIF4A2Q14240 407 aaKnown RBP15.45■□□□□ 0.06
HDAC4-208ENST00000463007 TSPYL6Q8N831 410 aa15.44■□□□□ 0.06
HDAC4-208ENST00000463007 MBIPQ9NS73 344 aa15.44■□□□□ 0.06
HDAC4-208ENST00000463007 NWD1Q149M9 1564 aa15.44■□□□□ 0.06
HDAC4-208ENST00000463007 SMC5Q8IY18 1101 aa15.44■□□□□ 0.06
HDAC4-208ENST00000463007 MRPL50Q8N5N7 158 aaKnown RBP15.44■□□□□ 0.06
HDAC4-208ENST00000463007 GAS2L2Q8NHY3 880 aa15.44■□□□□ 0.06
HDAC4-208ENST00000463007 MCTP1Q6DN14 999 aa15.44■□□□□ 0.06
HDAC4-208ENST00000463007 NOL8Q76FK4 1167 aaKnown RBP15.44■□□□□ 0.06
HDAC4-208ENST00000463007 ARHGAP45Q92619 1136 aa15.44■□□□□ 0.06
HDAC4-208ENST00000463007 PKNOX2Q96KN3 472 aa15.44■□□□□ 0.06
HDAC4-208ENST00000463007 SLC26A8Q96RN1 970 aa15.44■□□□□ 0.06
HDAC4-208ENST00000463007 IPO8O15397 1037 aaKnown RBP15.43■□□□□ 0.06
HDAC4-208ENST00000463007 RBM10P98175 930 aaKnown RBP15.43■□□□□ 0.06
HDAC4-208ENST00000463007 CALD1Q05682 793 aaKnown RBP15.43■□□□□ 0.06
HDAC4-208ENST00000463007 TBC1D9Q6ZT07 1266 aa15.43■□□□□ 0.06
HDAC4-208ENST00000463007 CFAP44Q96MT7 982 aa15.43■□□□□ 0.06
HDAC4-208ENST00000463007 AMOTL2Q9Y2J4 779 aa15.43■□□□□ 0.06
HDAC4-208ENST00000463007 ABCC4O15439 1325 aa15.43■□□□□ 0.06
HDAC4-208ENST00000463007 GNAI1P63096 354 aa15.43■□□□□ 0.06
HDAC4-208ENST00000463007 GLIPR1L2Q4G1C9 344 aa15.43■□□□□ 0.06
HDAC4-208ENST00000463007 MPNDQ8N594 471 aa15.43■□□□□ 0.06
HDAC4-208ENST00000463007 TTC21AQ8NDW8 1320 aa15.43■□□□□ 0.06
HDAC4-208ENST00000463007 KDRP35968 1356 aa15.42■□□□□ 0.06
HDAC4-208ENST00000463007 RGS12O14924 1447 aa15.42■□□□□ 0.06
HDAC4-208ENST00000463007 C16orf71Q8IYS4 520 aaPredicted RBP15.42■□□□□ 0.06
HDAC4-208ENST00000463007 NUCB1Q02818 461 aa15.42■□□□□ 0.06
HDAC4-208ENST00000463007 CAVIN1Q6NZI2 390 aaKnown RBP15.42■□□□□ 0.06
HDAC4-208ENST00000463007 ANP32BQ92688 251 aaKnown RBP15.42■□□□□ 0.06
HDAC4-208ENST00000463007 ARHGEF10O15013 1369 aa15.42■□□□□ 0.06
HDAC4-208ENST00000463007 DCTN1Q14203 1278 aa15.41■□□□□ 0.06
HDAC4-208ENST00000463007 AEBP1Q8IUX7 1158 aa15.41■□□□□ 0.06
HDAC4-208ENST00000463007 CRB1P82279 1406 aa15.41■□□□□ 0.06
HDAC4-208ENST00000463007 PKP1Q13835 747 aa15.41■□□□□ 0.06
HDAC4-208ENST00000463007 EID1Q9Y6B2 187 aa15.41■□□□□ 0.06
HDAC4-208ENST00000463007 NASPP49321 788 aaPredicted RBP15.4■□□□□ 0.06
HDAC4-208ENST00000463007 LMOD3Q0VAK6 560 aa15.4■□□□□ 0.06
HDAC4-208ENST00000463007 GOLGA6L22H0YM25 854 aa15.4■□□□□ 0.06
HDAC4-208ENST00000463007 ZMYND15Q9H091 742 aa15.4■□□□□ 0.06
HDAC4-208ENST00000463007 ADAMTSL3P82987 1691 aa15.39■□□□□ 0.05
HDAC4-208ENST00000463007 FAM83GA6ND36 823 aa15.39■□□□□ 0.05
HDAC4-208ENST00000463007 SOX12O15370 315 aa15.39■□□□□ 0.05
HDAC4-208ENST00000463007 K7ELQ4 463 aaPredicted RBP15.39■□□□□ 0.05
HDAC4-208ENST00000463007 ZBTB7BO15156 539 aaPredicted RBP15.39■□□□□ 0.05
HDAC4-208ENST00000463007 C8orf58Q8NAV2 365 aa15.39■□□□□ 0.05
HDAC4-208ENST00000463007 SBNO1A3KN83 1393 aa15.39■□□□□ 0.05
HDAC4-208ENST00000463007 PHRF1Q9P1Y6 1649 aaKnown RBP15.38■□□□□ 0.05
HDAC4-208ENST00000463007 SMARCA5O60264 1052 aaPredicted RBP15.38■□□□□ 0.05
HDAC4-208ENST00000463007 HSP90AB2PQ58FF8 381 aa15.38■□□□□ 0.05
HDAC4-208ENST00000463007 KIAA1211Q6ZU35 1233 aa15.38■□□□□ 0.05
HDAC4-208ENST00000463007 THEMISQ8N1K5 641 aaPredicted RBP15.38■□□□□ 0.05
HDAC4-208ENST00000463007 KIF2CQ99661 725 aa15.38■□□□□ 0.05
HDAC4-208ENST00000463007 OTUD7AQ8TE49 926 aaPredicted RBP15.37■□□□□ 0.05
HDAC4-208ENST00000463007 RBM27Q9P2N5 1060 aaKnown RBP15.37■□□□□ 0.05
HDAC4-208ENST00000463007 MAP3K19Q56UN5 1328 aa15.37■□□□□ 0.05
HDAC4-208ENST00000463007 KIF24Q5T7B8 1368 aa15.37■□□□□ 0.05
HDAC4-208ENST00000463007 KIAA0232Q92628 1395 aa15.37■□□□□ 0.05
HDAC4-208ENST00000463007 RAB3GAP1Q15042 981 aa15.37■□□□□ 0.05
HDAC4-208ENST00000463007 RNF214Q8ND24 703 aa15.36■□□□□ 0.05
HDAC4-208ENST00000463007 FLT4P35916 1363 aa15.36■□□□□ 0.05
HDAC4-208ENST00000463007 N4BP2Q86UW6 1770 aaPredicted RBP15.36■□□□□ 0.05
HDAC4-208ENST00000463007 CHL1O00533 1208 aa15.36■□□□□ 0.05
HDAC4-208ENST00000463007 MSNP26038 577 aaKnown RBP15.36■□□□□ 0.05
HDAC4-208ENST00000463007 RBM25P49756 843 aaKnown RBP15.36■□□□□ 0.05
HDAC4-208ENST00000463007 KRT24Q2M2I5 525 aa15.36■□□□□ 0.05
HDAC4-208ENST00000463007 TWISTNBQ3B726 338 aaPredicted RBP15.36■□□□□ 0.05
HDAC4-208ENST00000463007 SULT6B1Q6IMI4 303 aa15.36■□□□□ 0.05
HDAC4-208ENST00000463007 PRPF40AO75400 957 aaKnown RBP15.35■□□□□ 0.05
HDAC4-208ENST00000463007 LTN1O94822 1766 aa15.35■□□□□ 0.05
HDAC4-208ENST00000463007 IGSF1Q8N6C5 1336 aa15.35■□□□□ 0.05
HDAC4-208ENST00000463007 FAM13BQ9NYF5 915 aa15.35■□□□□ 0.05
HDAC4-208ENST00000463007 FAM208AQ9UK61 1670 aaKnown RBP15.35■□□□□ 0.05
HDAC4-208ENST00000463007 BAG4O95429 457 aaKnown RBP15.34■□□□□ 0.05
HDAC4-208ENST00000463007 SIRT2Q8IXJ6 389 aa15.34■□□□□ 0.05
HDAC4-208ENST00000463007 ZGPATQ8N5A5 531 aaKnown RBP15.34■□□□□ 0.05
HDAC4-208ENST00000463007 R3HCC1Q9Y3T6 440 aaKnown RBP15.34■□□□□ 0.05
HDAC4-208ENST00000463007 NFAT5O94916 1531 aa15.34■□□□□ 0.05
HDAC4-208ENST00000463007 NUTM2FA1L443 756 aa15.34■□□□□ 0.05
HDAC4-208ENST00000463007 BMP2KLQ5H9B9 411 aa15.34■□□□□ 0.05
HDAC4-208ENST00000463007 KCNA6P17658 529 aa15.33■□□□□ 0.04
HDAC4-208ENST00000463007 TSHZ3Q63HK5 1081 aa15.33■□□□□ 0.04
HDAC4-208ENST00000463007 XPCQ01831 940 aaPredicted RBP15.33■□□□□ 0.04
HDAC4-208ENST00000463007 ATP10DQ9P241 1426 aa15.32■□□□□ 0.04
HDAC4-208ENST00000463007 DTNBO60941 627 aa15.32■□□□□ 0.04
HDAC4-208ENST00000463007 PLEKHG5O94827 1062 aa15.31■□□□□ 0.04
HDAC4-208ENST00000463007 SNX21Q969T3 373 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms