RNA–Protein interactions for RNA: ENST00000462730.5

HDAC6-213, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 1,999 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-213ENST00000462730 ABCC6O95255 1503 aa18.6■□□□□ 0.57
HDAC6-213ENST00000462730 MTHFSDQ2M296 383 aaKnown RBP18.6■□□□□ 0.57
HDAC6-213ENST00000462730 SSH1Q8WYL5 1049 aa18.6■□□□□ 0.57
HDAC6-213ENST00000462730 TNNQ9UQP3 1299 aa18.6■□□□□ 0.57
HDAC6-213ENST00000462730 COG6Q9Y2V7 657 aa18.6■□□□□ 0.57
HDAC6-213ENST00000462730 ANKRD24Q8TF21 1146 aa18.59■□□□□ 0.57
HDAC6-213ENST00000462730 LRRC59Q96AG4 307 aaKnown RBP18.59■□□□□ 0.57
HDAC6-213ENST00000462730 MBIPQ9NS73 344 aa18.59■□□□□ 0.57
HDAC6-213ENST00000462730 NCAPD2Q15021 1401 aa18.59■□□□□ 0.57
HDAC6-213ENST00000462730 ERBB3P21860 1342 aa18.58■□□□□ 0.56
HDAC6-213ENST00000462730 ZKSCAN2Q63HK3 967 aa18.58■□□□□ 0.56
HDAC6-213ENST00000462730 CFAP44Q96MT7 982 aa18.58■□□□□ 0.56
HDAC6-213ENST00000462730 RLBP1P12271 317 aa18.57■□□□□ 0.56
HDAC6-213ENST00000462730 GAS2L2Q8NHY3 880 aa18.57■□□□□ 0.56
HDAC6-213ENST00000462730 LMO7Q8WWI1 1683 aa18.57■□□□□ 0.56
HDAC6-213ENST00000462730 KIAA0232Q92628 1395 aa18.57■□□□□ 0.56
HDAC6-213ENST00000462730 KDM2BQ8NHM5 1336 aa18.57■□□□□ 0.56
HDAC6-213ENST00000462730 CPDO75976 1380 aa18.56■□□□□ 0.56
HDAC6-213ENST00000462730 MCM10Q7L590 875 aa18.56■□□□□ 0.56
HDAC6-213ENST00000462730 LRRC37A3O60309 1634 aa18.56■□□□□ 0.56
HDAC6-213ENST00000462730 ALDH1L2Q3SY69 923 aa18.55■□□□□ 0.56
HDAC6-213ENST00000462730 CLUAP1Q96AJ1 413 aa18.55■□□□□ 0.56
HDAC6-213ENST00000462730 FAM208AQ9UK61 1670 aaKnown RBP18.55■□□□□ 0.56
HDAC6-213ENST00000462730 CENPQQ7L2Z9 268 aaPredicted RBP18.55■□□□□ 0.56
HDAC6-213ENST00000462730 AHDC1Q5TGY3 1603 aaPredicted RBP18.54■□□□□ 0.56
HDAC6-213ENST00000462730 CHRNA2Q15822 529 aa18.54■□□□□ 0.56
HDAC6-213ENST00000462730 FTSJ3Q8IY81 847 aaKnown RBP18.54■□□□□ 0.56
HDAC6-213ENST00000462730 MS4A1P11836 297 aa18.53■□□□□ 0.56
HDAC6-213ENST00000462730 DZIP1LQ8IYY4 767 aaKnown RBP18.53■□□□□ 0.56
HDAC6-213ENST00000462730 ZNF428Q96B54 188 aa18.53■□□□□ 0.56
HDAC6-213ENST00000462730 KIF16BQ96L93 1317 aa18.53■□□□□ 0.56
HDAC6-213ENST00000462730 VAMP4O75379 141 aa18.53■□□□□ 0.56
HDAC6-213ENST00000462730 TSPYL6Q8N831 410 aa18.53■□□□□ 0.56
HDAC6-213ENST00000462730 RTF1Q92541 710 aaKnown RBP18.53■□□□□ 0.56
HDAC6-213ENST00000462730 NOB1Q9ULX3 412 aaKnown RBP18.53■□□□□ 0.56
HDAC6-213ENST00000462730 MAP3K5Q99683 1374 aa18.52■□□□□ 0.56
HDAC6-213ENST00000462730 CRB1P82279 1406 aa18.52■□□□□ 0.56
HDAC6-213ENST00000462730 TRIM27P14373 513 aa18.51■□□□□ 0.55
HDAC6-213ENST00000462730 MVPQ14764 893 aaKnown RBP18.51■□□□□ 0.55
HDAC6-213ENST00000462730 ATF7IPQ6VMQ6 1270 aa18.51■□□□□ 0.55
HDAC6-213ENST00000462730 GNAT3A8MTJ3 354 aa18.5■□□□□ 0.55
HDAC6-213ENST00000462730 ELL2O00472 640 aaPredicted RBP18.5■□□□□ 0.55
HDAC6-213ENST00000462730 HAP1P54257 671 aaPredicted RBP18.5■□□□□ 0.55
HDAC6-213ENST00000462730 AAMPQ13685 434 aa18.5■□□□□ 0.55
HDAC6-213ENST00000462730 TWISTNBQ3B726 338 aaPredicted RBP18.5■□□□□ 0.55
HDAC6-213ENST00000462730 C8orf58Q8NAV2 365 aa18.5■□□□□ 0.55
HDAC6-213ENST00000462730 CHL1O00533 1208 aa18.5■□□□□ 0.55
HDAC6-213ENST00000462730 TCERG1O14776 1098 aaKnown RBP18.5■□□□□ 0.55
HDAC6-213ENST00000462730 IPO8O15397 1037 aaKnown RBP18.5■□□□□ 0.55
HDAC6-213ENST00000462730 HTATSF1O43719 755 aaKnown RBP18.49■□□□□ 0.55
HDAC6-213ENST00000462730 PRDM11Q9NQV5 511 aa18.49■□□□□ 0.55
HDAC6-213ENST00000462730 BRPF1P55201 1214 aaPredicted RBP18.48■□□□□ 0.55
HDAC6-213ENST00000462730 MRPL50Q8N5N7 158 aaKnown RBP18.48■□□□□ 0.55
HDAC6-213ENST00000462730 NLRP2Q9NX02 1062 aa18.48■□□□□ 0.55
HDAC6-213ENST00000462730 CSB-PGBD3P0DP91 1061 aa18.47■□□□□ 0.55
HDAC6-213ENST00000462730 SKAP1Q86WV1 359 aa18.47■□□□□ 0.55
HDAC6-213ENST00000462730 COL22A1Q8NFW1 1626 aaPredicted RBP18.46■□□□□ 0.55
HDAC6-213ENST00000462730 ITPRIPQ8IWB1 547 aa18.46■□□□□ 0.55
HDAC6-213ENST00000462730 COL5A2P05997 1499 aaPredicted RBP18.45■□□□□ 0.54
HDAC6-213ENST00000462730 PHLPP1O60346 1717 aa18.45■□□□□ 0.54
HDAC6-213ENST00000462730 IGHDP01880 384 aa18.45■□□□□ 0.54
HDAC6-213ENST00000462730 PLEKHO1Q53GL0 409 aaPredicted RBP18.45■□□□□ 0.54
HDAC6-213ENST00000462730 AMOTQ4VCS5 1084 aa18.44■□□□□ 0.54
HDAC6-213ENST00000462730 TMEM57Q8N5G2 664 aa18.44■□□□□ 0.54
HDAC6-213ENST00000462730 IL17REQ8NFR9 667 aa18.44■□□□□ 0.54
HDAC6-213ENST00000462730 MEGF6O75095 1541 aa18.44■□□□□ 0.54
HDAC6-213ENST00000462730 COL16A1Q07092 1604 aaPredicted RBP18.44■□□□□ 0.54
HDAC6-213ENST00000462730 VIRMAQ69YN4 1812 aaKnown RBP18.44■□□□□ 0.54
HDAC6-213ENST00000462730 KRT24Q2M2I5 525 aa18.44■□□□□ 0.54
HDAC6-213ENST00000462730 ZNF530Q6P9A1 599 aaPredicted RBP18.44■□□□□ 0.54
HDAC6-213ENST00000462730 TSPYL4Q9UJ04 414 aa18.44■□□□□ 0.54
HDAC6-213ENST00000462730 CEMIPQ8WUJ3 1361 aa18.43■□□□□ 0.54
HDAC6-213ENST00000462730 MIS18AQ9NYP9 233 aa18.43■□□□□ 0.54
HDAC6-213ENST00000462730 DDX19BQ9UMR2 479 aa18.43■□□□□ 0.54
HDAC6-213ENST00000462730 PCDHB15Q9Y5E8 787 aa18.43■□□□□ 0.54
HDAC6-213ENST00000462730 AKAP4Q5JQC9 854 aa18.42■□□□□ 0.54
HDAC6-213ENST00000462730 RAPGEF4Q8WZA2 1011 aa18.42■□□□□ 0.54
HDAC6-213ENST00000462730 ARHGAP45Q92619 1136 aa18.42■□□□□ 0.54
HDAC6-213ENST00000462730 WDR17Q8IZU2 1322 aa18.41■□□□□ 0.54
HDAC6-213ENST00000462730 C1orf141Q5JVX7 400 aa18.41■□□□□ 0.54
HDAC6-213ENST00000462730 PKD1L3Q7Z443 1732 aa18.4■□□□□ 0.54
HDAC6-213ENST00000462730 TOM1O60784 492 aa18.4■□□□□ 0.54
HDAC6-213ENST00000462730 TATP17735 454 aaPredicted RBP18.39■□□□□ 0.53
HDAC6-213ENST00000462730 PARP4Q9UKK3 1724 aaKnown RBP18.39■□□□□ 0.53
HDAC6-213ENST00000462730 PLEKHG2Q9H7P9 1386 aa18.39■□□□□ 0.53
HDAC6-213ENST00000462730 ADAMTS7Q9UKP4 1686 aa18.39■□□□□ 0.53
HDAC6-213ENST00000462730 PIP4K2BP78356 416 aa18.39■□□□□ 0.53
HDAC6-213ENST00000462730 LGR6Q9HBX8 967 aa18.39■□□□□ 0.53
HDAC6-213ENST00000462730 NOP58Q9Y2X3 529 aaKnown RBP18.39■□□□□ 0.53
HDAC6-213ENST00000462730 COL14A1Q05707 1796 aaKnown RBP18.38■□□□□ 0.53
HDAC6-213ENST00000462730 OVOS2A0A0G2JMS6 1433 aa18.38■□□□□ 0.53
HDAC6-213ENST00000462730 TOM1L2Q6ZVM7 507 aa18.38■□□□□ 0.53
HDAC6-213ENST00000462730 KDM3BQ7LBC6 1761 aa18.38■□□□□ 0.53
HDAC6-213ENST00000462730 TAF7Q15545 349 aaPredicted RBP18.37■□□□□ 0.53
HDAC6-213ENST00000462730 MPRIPQ6WCQ1 1025 aa18.37■□□□□ 0.53
HDAC6-213ENST00000462730 API5Q9BZZ5 524 aaKnown RBP18.37■□□□□ 0.53
HDAC6-213ENST00000462730 RWDD1Q9H446 243 aaPredicted RBP18.37■□□□□ 0.53
HDAC6-213ENST00000462730 ABCC4O15439 1325 aa18.37■□□□□ 0.53
HDAC6-213ENST00000462730 AEBP2Q6ZN18 517 aaPredicted RBP18.37■□□□□ 0.53
HDAC6-213ENST00000462730 RGS3P49796 1198 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms