RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 SLC16A10Q8TF71 515 aa21.39■■□□□ 1.01
SKA3-204ENST00000462482 NBPF4Q96M43 638 aa21.39■■□□□ 1.01
SKA3-204ENST00000462482 TFCP2L1Q9NZI6 479 aa21.39■■□□□ 1.01
SKA3-204ENST00000462482 FAM208AQ9UK61 1670 aaKnown RBP21.39■■□□□ 1.01
SKA3-204ENST00000462482 POLD1P28340 1107 aa21.38■■□□□ 1.01
SKA3-204ENST00000462482 HMGB2P26583 209 aaKnown RBP21.37■■□□□ 1.01
SKA3-204ENST00000462482 USHBP1Q8N6Y0 703 aa21.37■■□□□ 1.01
SKA3-204ENST00000462482 AKT1S1Q96B36 256 aa21.37■■□□□ 1.01
SKA3-204ENST00000462482 SGIP1Q9BQI5 828 aa21.37■■□□□ 1.01
SKA3-204ENST00000462482 FLT4P35916 1363 aa21.36■■□□□ 1.01
SKA3-204ENST00000462482 KIF24Q5T7B8 1368 aa21.36■■□□□ 1.01
SKA3-204ENST00000462482 CCNL1Q9UK58 526 aaPredicted RBP21.35■■□□□ 1.01
SKA3-204ENST00000462482 INSRP06213 1382 aa21.35■■□□□ 1.01
SKA3-204ENST00000462482 MEGF6O75095 1541 aa21.34■■□□□ 1.01
SKA3-204ENST00000462482 HSP90AB2PQ58FF8 381 aa21.34■■□□□ 1.01
SKA3-204ENST00000462482 PCDH11XQ9BZA7 1347 aa21.33■■□□□ 1.01
SKA3-204ENST00000462482 PCDH11YQ9BZA8 1340 aa21.33■■□□□ 1.01
SKA3-204ENST00000462482 KLHL34Q8N239 644 aa21.33■■□□□ 1.01
SKA3-204ENST00000462482 BTAF1O14981 1849 aa21.33■■□□□ 1.01
SKA3-204ENST00000462482 MYOM1P52179 1685 aa21.32■■□□□ 1
SKA3-204ENST00000462482 MSH5O43196 834 aa21.32■■□□□ 1
SKA3-204ENST00000462482 PAPPAQ13219 1627 aa21.31■■□□□ 1
SKA3-204ENST00000462482 PPM1GO15355 546 aaPredicted RBP21.31■■□□□ 1
SKA3-204ENST00000462482 KCNQ4P56696 695 aa21.31■■□□□ 1
SKA3-204ENST00000462482 PNPLA7Q6ZV29 1317 aa21.3■■□□□ 1
SKA3-204ENST00000462482 NSD3Q9BZ95 1437 aa21.3■■□□□ 1
SKA3-204ENST00000462482 MAP3K5Q99683 1374 aa21.3■■□□□ 1
SKA3-204ENST00000462482 CLSPNQ9HAW4 1339 aa21.29■■□□□ 1
SKA3-204ENST00000462482 NSD2O96028 1365 aa21.29■■□□□ 1
SKA3-204ENST00000462482 POLR3GLQ9BT43 218 aa21.29■■□□□ 1
SKA3-204ENST00000462482 CARD14Q9BXL6 1004 aa21.29■■□□□ 1
SKA3-204ENST00000462482 PCGF6Q9BYE7 350 aa21.29■■□□□ 1
SKA3-204ENST00000462482 GPR162Q16538 588 aa21.28■■□□□ 1
SKA3-204ENST00000462482 EMILIN1Q9Y6C2 1016 aa21.28■■□□□ 1
SKA3-204ENST00000462482 SPG7Q9UQ90 795 aa21.26■□□□□ 0.99
SKA3-204ENST00000462482 MPRIPQ6WCQ1 1025 aa21.25■□□□□ 0.99
SKA3-204ENST00000462482 SMARCC1Q92922 1105 aaPredicted RBP21.25■□□□□ 0.99
SKA3-204ENST00000462482 PELP1Q8IZL8 1130 aaKnown RBP21.24■□□□□ 0.99
SKA3-204ENST00000462482 FLAD1Q8NFF5 587 aa21.24■□□□□ 0.99
SKA3-204ENST00000462482 KAT6BQ8WYB5 2073 aa21.23■□□□□ 0.99
SKA3-204ENST00000462482 DOT1LQ8TEK3 1739 aa21.22■□□□□ 0.99
SKA3-204ENST00000462482 CYP27B1O15528 508 aa21.22■□□□□ 0.99
SKA3-204ENST00000462482 WASHC2AQ641Q2 1341 aa21.22■□□□□ 0.99
SKA3-204ENST00000462482 PALLDQ8WX93 1383 aa21.22■□□□□ 0.99
SKA3-204ENST00000462482 ZNF784Q8NCA9 323 aaPredicted RBP21.21■□□□□ 0.99
SKA3-204ENST00000462482 COL23A1Q86Y22 540 aaPredicted RBP21.2■□□□□ 0.98
SKA3-204ENST00000462482 EIF4G2P78344 907 aaKnown RBP eCLIP21.19■□□□□ 0.98
SKA3-204ENST00000462482 AK7Q96M32 723 aa21.19■□□□□ 0.98
SKA3-204ENST00000462482 KIF20BQ96Q89 1820 aa21.18■□□□□ 0.98
SKA3-204ENST00000462482 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.18■□□□□ 0.98
SKA3-204ENST00000462482 TNNT2P45379 298 aaPredicted RBP21.17■□□□□ 0.98
SKA3-204ENST00000462482 EYA1Q99502 592 aa21.17■□□□□ 0.98
SKA3-204ENST00000462482 POLKQ9UBT6 870 aa21.17■□□□□ 0.98
SKA3-204ENST00000462482 RGPD2P0DJD1 1756 aa21.16■□□□□ 0.98
SKA3-204ENST00000462482 NKX1-1Q15270 411 aaPredicted RBP21.16■□□□□ 0.98
SKA3-204ENST00000462482 MSL1Q68DK7 614 aa21.16■□□□□ 0.98
SKA3-204ENST00000462482 TMOD3Q9NYL9 352 aa21.16■□□□□ 0.98
SKA3-204ENST00000462482 IFNL2Q8IZJ0 200 aa21.15■□□□□ 0.98
SKA3-204ENST00000462482 PIGBQ92521 554 aa21.15■□□□□ 0.98
SKA3-204ENST00000462482 SHANK3Q9BYB0 1731 aa21.15■□□□□ 0.98
SKA3-204ENST00000462482 GRIN3BO60391 1043 aa21.14■□□□□ 0.97
SKA3-204ENST00000462482 NLGN2Q8NFZ4 835 aa21.14■□□□□ 0.97
SKA3-204ENST00000462482 LY75O60449 1722 aa21.14■□□□□ 0.97
SKA3-204ENST00000462482 QSER1Q2KHR3 1735 aa21.13■□□□□ 0.97
SKA3-204ENST00000462482 NCAPD2Q15021 1401 aa21.12■□□□□ 0.97
SKA3-204ENST00000462482 HSPA5P11021 654 aaKnown RBP21.11■□□□□ 0.97
SKA3-204ENST00000462482 EIF4A2Q14240 407 aaKnown RBP21.11■□□□□ 0.97
SKA3-204ENST00000462482 CCER1Q8TC90 406 aaPredicted RBP21.11■□□□□ 0.97
SKA3-204ENST00000462482 LOC102724428A0A0B4J2F2 783 aa21.1■□□□□ 0.97
SKA3-204ENST00000462482 PHF14O94880 888 aa21.1■□□□□ 0.97
SKA3-204ENST00000462482 PHKG2P15735 406 aa21.1■□□□□ 0.97
SKA3-204ENST00000462482 SIK1P57059 783 aa21.1■□□□□ 0.97
SKA3-204ENST00000462482 PANK3Q9H999 370 aa21.1■□□□□ 0.97
SKA3-204ENST00000462482 CD2APQ9Y5K6 639 aa21.1■□□□□ 0.97
SKA3-204ENST00000462482 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.08■□□□□ 0.97
SKA3-204ENST00000462482 HSP90AB1P08238 724 aaKnown RBP21.08■□□□□ 0.97
SKA3-204ENST00000462482 SSFA2P28290 1259 aa21.08■□□□□ 0.97
SKA3-204ENST00000462482 PLEKHG2Q9H7P9 1386 aa21.08■□□□□ 0.96
SKA3-204ENST00000462482 ATP6V1AP38606 617 aa21.07■□□□□ 0.96
SKA3-204ENST00000462482 PLEKHO1Q53GL0 409 aaPredicted RBP21.07■□□□□ 0.96
SKA3-204ENST00000462482 MORC1Q86VD1 984 aa21.07■□□□□ 0.96
SKA3-204ENST00000462482 ASAP1Q9ULH1 1129 aa21.06■□□□□ 0.96
SKA3-204ENST00000462482 IGSF1Q8N6C5 1336 aa21.04■□□□□ 0.96
SKA3-204ENST00000462482 PKD1L3Q7Z443 1732 aa21.04■□□□□ 0.96
SKA3-204ENST00000462482 GNPATO15228 680 aa21.04■□□□□ 0.96
SKA3-204ENST00000462482 AMOTQ4VCS5 1084 aa21.04■□□□□ 0.96
SKA3-204ENST00000462482 LINC00116Q8NCU8 138 aa21.04■□□□□ 0.96
SKA3-204ENST00000462482 KNSTRNQ9Y448 316 aa21.04■□□□□ 0.96
SKA3-204ENST00000462482 C5P01031 1676 aa21.04■□□□□ 0.96
SKA3-204ENST00000462482 ERVV-2B6SEH9 535 aa21.03■□□□□ 0.96
SKA3-204ENST00000462482 YBX3P16989 372 aaKnown RBP eCLIP21.03■□□□□ 0.961e-6■■■■□ 20.7
SKA3-204ENST00000462482 DCAF5Q96JK2 942 aa21.03■□□□□ 0.96
SKA3-204ENST00000462482 ATG3Q9NT62 314 aa21.03■□□□□ 0.96
SKA3-204ENST00000462482 TUBGCP6Q96RT7 1819 aa21.02■□□□□ 0.96
SKA3-204ENST00000462482 COL24A1Q17RW2 1714 aa21.02■□□□□ 0.96
SKA3-204ENST00000462482 GIGYF1O75420 1035 aaPredicted RBP21.02■□□□□ 0.96
SKA3-204ENST00000462482 C1QTNF8P60827 252 aa21.02■□□□□ 0.96
SKA3-204ENST00000462482 ZNF530Q6P9A1 599 aaPredicted RBP21.02■□□□□ 0.96
SKA3-204ENST00000462482 ANKRD26Q9UPS8 1709 aa21.01■□□□□ 0.95
SKA3-204ENST00000462482 C1orf141Q5JVX7 400 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms