RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 CD109Q6YHK3 1445 aa8.4□□□□□ -1.06
SYNE1-216ENST00000461872 BAG4O95429 457 aaKnown RBP8.4□□□□□ -1.06
SYNE1-216ENST00000461872 NOL7Q9UMY1 257 aaKnown RBP8.4□□□□□ -1.06
SYNE1-216ENST00000461872 ZKSCAN5Q9Y2L8 839 aa8.4□□□□□ -1.06
SYNE1-216ENST00000461872 LRSAM1Q6UWE0 723 aa8.4□□□□□ -1.06
SYNE1-216ENST00000461872 CLEC17AQ6ZS10 378 aa8.4□□□□□ -1.06
SYNE1-216ENST00000461872 IFIT2P09913 472 aaKnown RBP8.4□□□□□ -1.07
SYNE1-216ENST00000461872 NOM1Q5C9Z4 860 aaKnown RBP8.4□□□□□ -1.07
SYNE1-216ENST00000461872 MINK1Q8N4C8 1332 aaPredicted RBP8.4□□□□□ -1.07
SYNE1-216ENST00000461872 FAM13BQ9NYF5 915 aa8.4□□□□□ -1.07
SYNE1-216ENST00000461872 FRMPD1Q5SYB0 1578 aa8.4□□□□□ -1.07
SYNE1-216ENST00000461872 CYP46A1Q9Y6A2 500 aa8.39□□□□□ -1.07
SYNE1-216ENST00000461872 ATL3Q6DD88 541 aa8.39□□□□□ -1.07
SYNE1-216ENST00000461872 CCDC70Q6NSX1 233 aa8.39□□□□□ -1.07
SYNE1-216ENST00000461872 DCTPP1Q9H773 170 aa8.39□□□□□ -1.07
SYNE1-216ENST00000461872 PAXBP1Q9Y5B6 917 aa8.39□□□□□ -1.07
SYNE1-216ENST00000461872 FKBP5Q13451 457 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-216ENST00000461872 GNL2Q13823 731 aaKnown RBP8.39□□□□□ -1.07
SYNE1-216ENST00000461872 OSCARQ8IYS5 282 aa8.39□□□□□ -1.07
SYNE1-216ENST00000461872 DDX19AQ9NUU7 478 aaKnown RBP8.39□□□□□ -1.07
SYNE1-216ENST00000461872 HMG20BQ9P0W2 317 aa8.39□□□□□ -1.07
SYNE1-216ENST00000461872 MLH3Q9UHC1 1453 aa8.39□□□□□ -1.07
SYNE1-216ENST00000461872 EDC4Q6P2E9 1401 aaKnown RBP8.39□□□□□ -1.07
SYNE1-216ENST00000461872 GLRX3O76003 335 aaKnown RBP8.39□□□□□ -1.07
SYNE1-216ENST00000461872 TTC21AQ8NDW8 1320 aa8.39□□□□□ -1.07
SYNE1-216ENST00000461872 UBE2HP62256 183 aa8.39□□□□□ -1.07
SYNE1-216ENST00000461872 ANKRD44Q8N8A2 993 aa8.39□□□□□ -1.07
SYNE1-216ENST00000461872 ANKRD20A12PQ8NF67 263 aa8.38□□□□□ -1.07
SYNE1-216ENST00000461872 ERCC4Q92889 916 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-216ENST00000461872 PHF23Q9BUL5 403 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-216ENST00000461872 PLA2R1Q13018 1463 aa8.38□□□□□ -1.07
SYNE1-216ENST00000461872 HMGB1P09429 215 aaKnown RBP8.38□□□□□ -1.07
SYNE1-216ENST00000461872 MX1P20591 662 aa8.38□□□□□ -1.07
SYNE1-216ENST00000461872 TBC1D9Q6ZT07 1266 aa8.38□□□□□ -1.07
SYNE1-216ENST00000461872 AATKQ6ZMQ8 1374 aa8.38□□□□□ -1.07
SYNE1-216ENST00000461872 KINO60870 393 aaKnown RBP8.38□□□□□ -1.07
SYNE1-216ENST00000461872 PRPF40AO75400 957 aaKnown RBP8.38□□□□□ -1.07
SYNE1-216ENST00000461872 IGHDP01880 384 aa8.38□□□□□ -1.07
SYNE1-216ENST00000461872 GSDMDP57764 484 aa8.38□□□□□ -1.07
SYNE1-216ENST00000461872 A0A0U1RQG5 324 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-216ENST00000461872 G3BP1Q13283 466 aaKnown RBP eCLIP8.38□□□□□ -1.07
SYNE1-216ENST00000461872 FAM135BQ49AJ0 1406 aa8.38□□□□□ -1.07
SYNE1-216ENST00000461872 GOLGA6L9A6NEM1 432 aa8.38□□□□□ -1.07
SYNE1-216ENST00000461872 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.38□□□□□ -1.07
SYNE1-216ENST00000461872 ARHGEF10O15013 1369 aa8.38□□□□□ -1.07
SYNE1-216ENST00000461872 MYO3AQ8NEV4 1616 aa8.38□□□□□ -1.07
SYNE1-216ENST00000461872 ZC3H13Q5T200 1668 aaKnown RBP8.38□□□□□ -1.07
SYNE1-216ENST00000461872 TSPYL4Q9UJ04 414 aa8.38□□□□□ -1.07
SYNE1-216ENST00000461872 RAD50Q92878 1312 aa8.38□□□□□ -1.07
SYNE1-216ENST00000461872 SIRT1Q96EB6 747 aa8.38□□□□□ -1.07
SYNE1-216ENST00000461872 TEFQ10587 303 aa8.37□□□□□ -1.07
SYNE1-216ENST00000461872 POGZQ7Z3K3 1410 aa8.37□□□□□ -1.07
SYNE1-216ENST00000461872 PPP1R9BQ96SB3 815 aa8.37□□□□□ -1.07
SYNE1-216ENST00000461872 PCDHB15Q9Y5E8 787 aa8.37□□□□□ -1.07
SYNE1-216ENST00000461872 ADGRF5Q8IZF2 1346 aa8.37□□□□□ -1.07
SYNE1-216ENST00000461872 CBFA2T2O43439 604 aa8.37□□□□□ -1.07
SYNE1-216ENST00000461872 SLC4A10Q6U841 1118 aa8.37□□□□□ -1.07
SYNE1-216ENST00000461872 KIF1BPQ96EK5 621 aa8.37□□□□□ -1.07
SYNE1-216ENST00000461872 FEZ1Q99689 392 aa8.37□□□□□ -1.07
SYNE1-216ENST00000461872 SAFB2Q14151 953 aaKnown RBP eCLIP8.37□□□□□ -1.07
SYNE1-216ENST00000461872 RILPL2Q969X0 211 aa8.37□□□□□ -1.07
SYNE1-216ENST00000461872 GGNBP2Q9H3C7 697 aa8.37□□□□□ -1.07
SYNE1-216ENST00000461872 C9orf78Q9NZ63 289 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-216ENST00000461872 TXLNBQ8N3L3 684 aa8.37□□□□□ -1.07
SYNE1-216ENST00000461872 CCDC112Q8NEF3 446 aa8.37□□□□□ -1.07
SYNE1-216ENST00000461872 HOXB7P09629 217 aa8.37□□□□□ -1.07
SYNE1-216ENST00000461872 CEP57L1Q8IYX8 460 aa8.37□□□□□ -1.07
SYNE1-216ENST00000461872 CGNQ9P2M7 1197 aaKnown RBP8.37□□□□□ -1.07
SYNE1-216ENST00000461872 GTPBP4Q9BZE4 634 aaKnown RBP8.37□□□□□ -1.07
SYNE1-216ENST00000461872 TTC41PQ6P2S7 1318 aa8.36□□□□□ -1.07
SYNE1-216ENST00000461872 ZNF500O60304 480 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-216ENST00000461872 ANO8Q9HCE9 1232 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-216ENST00000461872 MAP3K11Q16584 847 aa8.36□□□□□ -1.07
SYNE1-216ENST00000461872 R3HCC1Q9Y3T6 440 aaKnown RBP8.36□□□□□ -1.07
SYNE1-216ENST00000461872 ADGRB3O60242 1522 aa8.36□□□□□ -1.07
SYNE1-216ENST00000461872 DEPDC5O75140 1603 aa8.36□□□□□ -1.07
SYNE1-216ENST00000461872 ABCA9Q8IUA7 1624 aa8.36□□□□□ -1.07
SYNE1-216ENST00000461872 NGDNQ8NEJ9 315 aaKnown RBP8.36□□□□□ -1.07
SYNE1-216ENST00000461872 PRAM1Q96QH2 718 aa8.36□□□□□ -1.07
SYNE1-216ENST00000461872 CDK19Q9BWU1 502 aa8.36□□□□□ -1.07
SYNE1-216ENST00000461872 CABP2Q9NPB3 220 aa8.36□□□□□ -1.07
SYNE1-216ENST00000461872 LIMCH1Q9UPQ0 1083 aa8.36□□□□□ -1.07
SYNE1-216ENST00000461872 UQCRHLA0A096LP55 91 aa8.36□□□□□ -1.07
SYNE1-216ENST00000461872 TUBBP07437 444 aa8.36□□□□□ -1.07
SYNE1-216ENST00000461872 UQCRHP07919 91 aa8.36□□□□□ -1.07
SYNE1-216ENST00000461872 TSR2Q969E8 191 aaKnown RBP8.36□□□□□ -1.07
SYNE1-216ENST00000461872 CPSF1Q10570 1443 aaKnown RBP8.36□□□□□ -1.07
SYNE1-216ENST00000461872 MSH6P52701 1360 aa8.36□□□□□ -1.07
SYNE1-216ENST00000461872 PIK3R4Q99570 1358 aa8.36□□□□□ -1.07
SYNE1-216ENST00000461872 HSP90B1P14625 803 aaKnown RBP8.36□□□□□ -1.07
SYNE1-216ENST00000461872 KIF20AO95235 890 aa8.36□□□□□ -1.07
SYNE1-216ENST00000461872 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-216ENST00000461872 DACH1Q9UI36 760 aa8.35□□□□□ -1.07
SYNE1-216ENST00000461872 SF3A1Q15459 793 aaKnown RBP8.35□□□□□ -1.07
SYNE1-216ENST00000461872 DDX11Q96FC9 970 aa8.35□□□□□ -1.07
SYNE1-216ENST00000461872 CDK12Q9NYV4 1490 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-216ENST00000461872 CCDC171Q6TFL3 1326 aa8.35□□□□□ -1.07
SYNE1-216ENST00000461872 MYO1BO43795 1136 aa8.35□□□□□ -1.07
SYNE1-216ENST00000461872 ANTXR1Q9H6X2 564 aa8.35□□□□□ -1.07
SYNE1-216ENST00000461872 C1orf141Q5JVX7 400 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms